Wall clock time and date at job start Tue Mar 31 2020 05:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46749 * 241.59449 * 3 2 1 5 5 C 1.36935 * 119.99855 * 263.97230 * 4 3 2 6 6 H 1.08001 * 119.99294 * 198.19763 * 5 4 3 7 7 C 1.38806 * 120.00434 * 18.19735 * 5 4 3 8 8 N 1.31620 * 120.00173 * 23.13640 * 7 5 4 9 9 Si 1.86796 * 120.00025 * 203.14306 * 7 5 4 10 10 H 1.48497 * 109.47606 * 59.99722 * 9 7 5 11 11 H 1.48502 * 109.47277 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47059 * 299.99578 * 9 7 5 13 13 C 1.46500 * 119.99786 * 83.97670 * 4 3 2 14 14 C 1.52997 * 109.47461 * 89.99235 * 13 4 3 15 15 H 1.08989 * 109.47441 * 305.00476 * 14 13 4 16 16 C 1.53004 * 109.46798 * 65.00178 * 14 13 4 17 17 C 1.52998 * 109.47270 * 184.99837 * 14 13 4 18 18 O 1.42907 * 109.47019 * 175.00426 * 17 14 13 19 19 C 1.42897 * 113.99800 * 180.02562 * 18 17 14 20 20 C 1.50695 * 109.46946 * 179.97438 * 19 18 17 21 21 C 1.38244 * 119.99863 * 90.00479 * 20 19 18 22 22 C 1.38237 * 120.00000 * 179.97438 * 21 20 19 23 23 C 1.38241 * 119.99942 * 0.06523 * 22 21 20 24 24 C 1.38230 * 119.99732 * 359.90623 * 23 22 21 25 25 C 1.38233 * 120.00224 * 269.97804 * 20 19 18 26 26 H 4.40639 * 5.51437 * 180.02562 * 4 1 2 27 27 H 1.08998 * 109.46751 * 121.60154 * 3 2 1 28 28 H 1.08992 * 109.47170 * 1.59570 * 3 2 1 29 29 H 0.97000 * 120.00374 * 180.02562 * 8 7 5 30 30 H 1.09008 * 109.47192 * 329.99418 * 13 4 3 31 31 H 1.09002 * 109.47103 * 209.99831 * 13 4 3 32 32 H 1.09000 * 109.47245 * 180.02562 * 16 14 13 33 33 H 1.09003 * 109.46905 * 299.99718 * 16 14 13 34 34 H 1.08999 * 109.47403 * 59.99790 * 16 14 13 35 35 H 1.08993 * 109.47344 * 55.00257 * 17 14 13 36 36 H 1.09005 * 109.47355 * 295.00364 * 17 14 13 37 37 H 1.09003 * 109.47110 * 59.99850 * 19 18 17 38 38 H 1.09003 * 109.47332 * 299.99903 * 19 18 17 39 39 H 1.08002 * 119.99858 * 359.69298 * 21 20 19 40 40 H 1.07994 * 120.00186 * 179.97438 * 22 21 20 41 41 H 1.07997 * 119.99928 * 180.02562 * 23 22 21 42 42 H 1.08004 * 119.99472 * 180.02562 * 24 23 22 43 43 H 1.07995 * 120.00229 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1340 0.6580 1.2150 5 6 3.4790 1.9828 1.1852 6 1 4.1015 2.3963 1.9650 7 6 3.0288 2.7943 0.1530 8 7 1.9485 2.4624 -0.5217 9 14 3.9561 4.3573 -0.2786 10 1 5.3468 4.0155 -0.6716 11 1 3.2766 5.0400 -1.4089 12 1 3.9826 5.2590 0.9010 13 6 3.2530 -0.1022 2.4617 14 6 4.6469 -0.7270 2.5471 15 1 4.8328 -1.3242 1.6546 16 6 5.6972 0.3812 2.6470 17 6 4.7299 -1.6214 3.7857 18 8 5.9900 -2.2952 3.8031 19 6 6.1704 -3.1615 4.9251 20 6 7.5251 -3.8163 4.8415 21 6 8.6224 -3.2114 5.4256 22 6 9.8650 -3.8123 5.3493 23 6 10.0106 -5.0174 4.6878 24 6 8.9132 -5.6224 4.1043 25 6 7.6704 -5.0220 4.1812 26 1 -1.0501 -0.0003 -0.0001 27 1 3.0091 0.5393 -0.8753 28 1 3.0098 -1.0264 -0.0286 29 1 1.6341 3.0293 -1.2433 30 1 2.4999 -0.8902 2.4801 31 1 3.1012 0.5652 3.3100 32 1 6.6903 -0.0638 2.7075 33 1 5.6380 1.0184 1.7646 34 1 5.5113 0.9785 3.5396 35 1 3.9254 -2.3561 3.7578 36 1 4.6325 -1.0098 4.6827 37 1 5.3957 -3.9282 4.9204 38 1 6.1027 -2.5822 5.8460 39 1 8.5097 -2.2671 5.9376 40 1 10.7223 -3.3396 5.8053 41 1 10.9813 -5.4871 4.6286 42 1 9.0269 -6.5642 3.5879 43 1 6.8132 -5.4945 3.7249 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886188058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:14 Heat of formation + Delta-G solvation = 52.655966 kcal Electronic energy + Delta-G solvation = -21814.884210 eV Core-core repulsion = 18634.467635 eV Total energy + Delta-G solvation = -3180.416575 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.49312 -37.93280 -36.42137 -33.68439 -31.86260 -31.52618 -31.05872 -30.21746 -26.65076 -26.18339 -25.95043 -24.75621 -22.73781 -21.61381 -21.45977 -19.45272 -17.38188 -17.05020 -16.57975 -16.08236 -16.00875 -15.55536 -15.05776 -14.76738 -14.16826 -13.85914 -13.56721 -13.44072 -13.24825 -13.05178 -12.82809 -12.47829 -12.25392 -11.79065 -11.54579 -11.29750 -11.20021 -11.13057 -10.99998 -10.73320 -10.54151 -10.32518 -10.17751 -10.02705 -9.72440 -9.43245 -9.07453 -8.98637 -8.89168 -8.70582 -8.39618 -6.93851 -5.75336 -3.15453 1.11912 1.24724 3.40026 3.46539 3.47225 3.48863 4.04758 4.24792 4.41481 4.57276 4.66601 4.74360 4.85322 4.96361 5.13034 5.26843 5.34687 5.38289 5.38956 5.50369 5.52306 5.65610 5.81109 5.82684 5.88034 5.92064 5.98148 6.12466 6.27675 6.31585 6.33073 6.46234 6.54798 6.67232 6.74498 6.78989 6.82181 7.02570 7.18370 7.25712 7.38727 7.44888 7.80936 8.32973 9.14085 9.22707 9.82197 10.29149 11.28464 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.021898 B = 0.003116 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.362911 B = 8984.404870 C = 9749.456504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 C -0.095 4.095 3 C 0.267 3.733 4 N -0.582 5.582 5 C -0.263 4.263 6 H 0.078 0.922 7 C 0.003 3.997 8 N -0.887 5.887 9 Si 0.895 3.105 10 H -0.283 1.283 11 H -0.292 1.292 12 H -0.284 1.284 13 C 0.156 3.844 14 C -0.106 4.106 15 H 0.070 0.930 16 C -0.135 4.135 17 C 0.068 3.932 18 O -0.377 6.377 19 C 0.100 3.900 20 C -0.085 4.085 21 C -0.099 4.099 22 C -0.125 4.125 23 C -0.119 4.119 24 C -0.125 4.125 25 C -0.099 4.099 26 H 0.190 0.810 27 H 0.093 0.907 28 H 0.037 0.963 29 H 0.254 0.746 30 H 0.036 0.964 31 H 0.049 0.951 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.043 0.957 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.999 -14.320 10.665 20.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.322 4.322 2 C -0.098 4.098 3 C 0.142 3.858 4 N -0.302 5.302 5 C -0.392 4.392 6 H 0.095 0.905 7 C -0.196 4.196 8 N -0.530 5.530 9 Si 0.725 3.275 10 H -0.210 1.210 11 H -0.218 1.218 12 H -0.210 1.210 13 C 0.029 3.971 14 C -0.127 4.127 15 H 0.088 0.912 16 C -0.192 4.192 17 C -0.009 4.009 18 O -0.297 6.297 19 C 0.024 3.976 20 C -0.085 4.085 21 C -0.117 4.117 22 C -0.143 4.143 23 C -0.137 4.137 24 C -0.143 4.143 25 C -0.118 4.118 26 H 0.207 0.793 27 H 0.111 0.889 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.068 -14.163 10.385 20.760 hybrid contribution -0.141 0.981 -0.066 0.994 sum 10.927 -13.182 10.320 19.991 Atomic orbital electron populations 1.24177 0.95333 1.08026 1.04663 1.24354 0.95359 0.93741 0.96357 1.17745 0.82771 0.93796 0.91488 1.43950 1.74682 1.07630 1.03928 1.19181 1.25323 0.84855 1.09819 0.90454 1.24902 0.96222 0.97780 1.00705 1.70143 1.19782 1.38962 1.24109 0.86476 0.79888 0.83281 0.77862 1.20999 1.21823 1.21036 1.20702 0.91987 0.94467 0.89943 1.21827 0.99373 0.95892 0.95619 0.91158 1.21737 0.96881 0.98053 1.02524 1.22668 0.84380 0.94431 0.99414 1.88003 1.37259 1.59989 1.44443 1.21261 0.93338 0.92907 0.90138 1.19688 0.94888 0.95093 0.98813 1.21101 0.92254 0.99254 0.99118 1.21149 0.97295 0.95942 0.99897 1.21178 0.98677 0.95833 0.97995 1.21145 0.92812 1.00205 1.00125 1.21095 0.97740 0.95216 0.97702 0.79326 0.88934 0.94553 0.93568 0.94543 0.93280 0.94106 0.90275 0.94183 0.93842 0.93675 0.92763 0.92745 0.85909 0.86007 0.86159 0.86005 0.85913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.00 19.25 29.55 0.57 -6.43 16 2 C -0.10 -2.34 11.55 -37.12 -0.43 -2.77 16 3 C 0.27 6.35 5.41 -6.83 -0.04 6.31 16 4 N -0.58 -13.96 2.37 -176.57 -0.42 -14.38 16 5 C -0.26 -6.89 8.04 -15.06 -0.12 -7.01 16 6 H 0.08 1.98 6.99 -52.49 -0.37 1.62 16 7 C 0.00 0.09 4.81 -17.43 -0.08 0.00 16 8 N -0.89 -25.22 9.62 55.49 0.53 -24.68 16 9 Si 0.90 21.43 29.61 -169.99 -5.03 16.40 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.16 3.13 5.18 -4.04 -0.02 3.11 16 14 C -0.11 -1.86 2.83 -90.62 -0.26 -2.12 16 15 H 0.07 1.31 8.14 -51.94 -0.42 0.89 16 16 C -0.13 -2.44 8.31 37.16 0.31 -2.14 16 17 C 0.07 1.00 5.32 37.16 0.20 1.19 16 18 O -0.38 -5.65 9.86 -35.23 -0.35 -6.00 16 19 C 0.10 1.17 6.06 36.00 0.22 1.39 16 20 C -0.08 -0.98 5.51 -104.62 -0.58 -1.56 16 21 C -0.10 -1.07 9.70 -39.58 -0.38 -1.45 16 22 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 23 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 24 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 25 C -0.10 -1.07 9.70 -39.58 -0.38 -1.45 16 26 H 0.19 3.66 7.80 -54.09 -0.42 3.24 16 27 H 0.09 2.39 6.53 -51.93 -0.34 2.05 16 28 H 0.04 0.76 8.12 -51.93 -0.42 0.34 16 29 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.04 0.70 8.07 -51.92 -0.42 0.28 16 31 H 0.05 0.99 8.04 -51.93 -0.42 0.58 16 32 H 0.04 0.70 7.82 -51.93 -0.41 0.30 16 33 H 0.08 1.63 6.13 -51.93 -0.32 1.31 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.56 8.08 -51.93 -0.42 0.14 16 38 H 0.05 0.57 8.09 -51.93 -0.42 0.15 16 39 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 42 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 43 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 361.43 15.07 5.45 5.45 Total: -1.00 -30.14 361.43 -8.90 -39.04 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -6.89 Total: 1.73 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -2.19 Total: -17.55 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.12 Total: -39.06 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -0.35 Total: -6.00 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.14 -8.90 -39.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886188058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.696 kcal (2) G-P(sol) polarization free energy of solvation -30.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds