Wall clock time and date at job start Tue Mar 31 2020 05:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46749 * 241.59449 * 3 2 1 5 5 C 1.36935 * 119.99855 * 263.97230 * 4 3 2 6 6 H 1.08001 * 119.99294 * 198.19763 * 5 4 3 7 7 C 1.38806 * 120.00434 * 18.19735 * 5 4 3 8 8 N 1.31620 * 120.00173 * 23.13640 * 7 5 4 9 9 Si 1.86796 * 120.00025 * 203.14306 * 7 5 4 10 10 H 1.48497 * 109.47606 * 59.99722 * 9 7 5 11 11 H 1.48502 * 109.47277 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47059 * 299.99578 * 9 7 5 13 13 C 1.46500 * 119.99786 * 83.97670 * 4 3 2 14 14 C 1.52997 * 109.47461 * 89.99235 * 13 4 3 15 15 H 1.08989 * 109.47441 * 305.00476 * 14 13 4 16 16 C 1.53004 * 109.46798 * 65.00178 * 14 13 4 17 17 C 1.52998 * 109.47270 * 184.99837 * 14 13 4 18 18 O 1.42907 * 109.47019 * 175.00426 * 17 14 13 19 19 C 1.42897 * 113.99800 * 180.02562 * 18 17 14 20 20 C 1.50695 * 109.46946 * 179.97438 * 19 18 17 21 21 C 1.38244 * 119.99863 * 90.00479 * 20 19 18 22 22 C 1.38237 * 120.00000 * 179.97438 * 21 20 19 23 23 C 1.38241 * 119.99942 * 0.06523 * 22 21 20 24 24 C 1.38230 * 119.99732 * 359.90623 * 23 22 21 25 25 C 1.38233 * 120.00224 * 269.97804 * 20 19 18 26 26 H 4.40639 * 5.51437 * 180.02562 * 4 1 2 27 27 H 1.08998 * 109.46751 * 121.60154 * 3 2 1 28 28 H 1.08992 * 109.47170 * 1.59570 * 3 2 1 29 29 H 0.97000 * 120.00374 * 180.02562 * 8 7 5 30 30 H 1.09008 * 109.47192 * 329.99418 * 13 4 3 31 31 H 1.09002 * 109.47103 * 209.99831 * 13 4 3 32 32 H 1.09000 * 109.47245 * 180.02562 * 16 14 13 33 33 H 1.09003 * 109.46905 * 299.99718 * 16 14 13 34 34 H 1.08999 * 109.47403 * 59.99790 * 16 14 13 35 35 H 1.08993 * 109.47344 * 55.00257 * 17 14 13 36 36 H 1.09005 * 109.47355 * 295.00364 * 17 14 13 37 37 H 1.09003 * 109.47110 * 59.99850 * 19 18 17 38 38 H 1.09003 * 109.47332 * 299.99903 * 19 18 17 39 39 H 1.08002 * 119.99858 * 359.69298 * 21 20 19 40 40 H 1.07994 * 120.00186 * 179.97438 * 22 21 20 41 41 H 1.07997 * 119.99928 * 180.02562 * 23 22 21 42 42 H 1.08004 * 119.99472 * 180.02562 * 24 23 22 43 43 H 1.07995 * 120.00229 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1340 0.6580 1.2150 5 6 3.4790 1.9828 1.1852 6 1 4.1015 2.3963 1.9650 7 6 3.0288 2.7943 0.1530 8 7 1.9485 2.4624 -0.5217 9 14 3.9561 4.3573 -0.2786 10 1 5.3468 4.0155 -0.6716 11 1 3.2766 5.0400 -1.4089 12 1 3.9826 5.2590 0.9010 13 6 3.2530 -0.1022 2.4617 14 6 4.6469 -0.7270 2.5471 15 1 4.8328 -1.3242 1.6546 16 6 5.6972 0.3812 2.6470 17 6 4.7299 -1.6214 3.7857 18 8 5.9900 -2.2952 3.8031 19 6 6.1704 -3.1615 4.9251 20 6 7.5251 -3.8163 4.8415 21 6 8.6224 -3.2114 5.4256 22 6 9.8650 -3.8123 5.3493 23 6 10.0106 -5.0174 4.6878 24 6 8.9132 -5.6224 4.1043 25 6 7.6704 -5.0220 4.1812 26 1 -1.0501 -0.0003 -0.0001 27 1 3.0091 0.5393 -0.8753 28 1 3.0098 -1.0264 -0.0286 29 1 1.6341 3.0293 -1.2433 30 1 2.4999 -0.8902 2.4801 31 1 3.1012 0.5652 3.3100 32 1 6.6903 -0.0638 2.7075 33 1 5.6380 1.0184 1.7646 34 1 5.5113 0.9785 3.5396 35 1 3.9254 -2.3561 3.7578 36 1 4.6325 -1.0098 4.6827 37 1 5.3957 -3.9282 4.9204 38 1 6.1027 -2.5822 5.8460 39 1 8.5097 -2.2671 5.9376 40 1 10.7223 -3.3396 5.8053 41 1 10.9813 -5.4871 4.6286 42 1 9.0269 -6.5642 3.5879 43 1 6.8132 -5.4945 3.7249 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886188058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:13 Heat of formation + Delta-G solvation = 38.718333 kcal Electronic energy + Delta-G solvation = -21815.488591 eV Core-core repulsion = 18634.467635 eV Total energy + Delta-G solvation = -3181.020956 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.28563 -39.15453 -37.98508 -35.21214 -33.45666 -32.85016 -31.91692 -31.77832 -28.12759 -27.80199 -27.36367 -26.06215 -23.46551 -23.38445 -22.24182 -20.92325 -19.27091 -18.22754 -17.77752 -17.51646 -17.01393 -16.78645 -16.30560 -15.91196 -15.53349 -15.45076 -15.02257 -14.76169 -14.48977 -14.24434 -13.93011 -13.66678 -13.45597 -13.27181 -13.05704 -12.88336 -12.78749 -12.59799 -12.30559 -12.09160 -11.93166 -11.89764 -11.73332 -11.53692 -11.39205 -10.75099 -10.64941 -10.50017 -10.30636 -9.81239 -9.74486 -8.87256 -7.79346 -5.19333 0.35787 0.50963 1.48451 1.52276 1.57344 2.32035 2.53876 2.60459 2.65714 3.15814 3.33728 3.80715 3.93326 3.98618 4.06826 4.12109 4.16678 4.28176 4.33792 4.36381 4.41650 4.48600 4.63876 4.66486 4.69644 4.78487 4.82383 4.91320 5.06061 5.09202 5.16561 5.17510 5.27184 5.32301 5.55431 5.56559 5.61623 5.62772 5.67252 5.69307 5.75795 6.11046 6.30376 6.36128 7.14459 7.37028 7.88114 8.31647 9.22481 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.021898 B = 0.003116 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.362911 B = 8984.404870 C = 9749.456504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 C -0.134 4.134 3 C 0.270 3.730 4 N -0.596 5.596 5 C -0.258 4.258 6 H 0.079 0.921 7 C -0.047 4.047 8 N -0.914 5.914 9 Si 0.952 3.048 10 H -0.281 1.281 11 H -0.300 1.300 12 H -0.280 1.280 13 C 0.158 3.842 14 C -0.096 4.096 15 H 0.058 0.942 16 C -0.126 4.126 17 C 0.076 3.924 18 O -0.398 6.398 19 C 0.098 3.902 20 C -0.107 4.107 21 C -0.115 4.115 22 C -0.132 4.132 23 C -0.122 4.122 24 C -0.132 4.132 25 C -0.115 4.115 26 H 0.222 0.778 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.245 0.755 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.128 0.872 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.908 -15.402 11.888 22.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 C -0.137 4.137 3 C 0.145 3.855 4 N -0.316 5.316 5 C -0.388 4.388 6 H 0.097 0.903 7 C -0.244 4.244 8 N -0.559 5.559 9 Si 0.781 3.219 10 H -0.207 1.207 11 H -0.227 1.227 12 H -0.206 1.206 13 C 0.032 3.968 14 C -0.117 4.117 15 H 0.076 0.924 16 C -0.183 4.183 17 C -0.001 4.001 18 O -0.318 6.318 19 C 0.022 3.978 20 C -0.107 4.107 21 C -0.133 4.133 22 C -0.150 4.150 23 C -0.140 4.140 24 C -0.149 4.149 25 C -0.133 4.133 26 H 0.238 0.762 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.146 0.854 40 H 0.160 0.840 41 H 0.163 0.837 42 H 0.161 0.839 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 11.998 -15.266 11.641 22.639 hybrid contribution -0.378 1.223 -0.386 1.337 sum 11.620 -14.043 11.255 21.423 Atomic orbital electron populations 1.25002 0.96360 1.06679 1.03216 1.24718 0.96183 0.95026 0.97733 1.17653 0.82842 0.94508 0.90524 1.44128 1.74788 1.07331 1.05310 1.19435 1.24147 0.85840 1.09372 0.90324 1.25512 0.97068 1.00501 1.01277 1.70293 1.21149 1.39866 1.24593 0.85572 0.78643 0.80452 0.77195 1.20734 1.22711 1.20586 1.20791 0.93632 0.94257 0.88126 1.21579 0.97359 0.95910 0.96834 0.92383 1.21611 0.97518 0.97852 1.01308 1.22476 0.85056 0.94522 0.98021 1.87953 1.37107 1.60674 1.46111 1.21414 0.94036 0.92875 0.89443 1.19829 0.95088 0.95791 0.99982 1.21310 0.92754 0.99744 0.99528 1.21469 0.97521 0.96215 0.99765 1.21550 0.99730 0.95624 0.97091 1.21470 0.92485 1.00987 0.99990 1.21312 0.98699 0.95327 0.97975 0.76165 0.91716 0.92170 0.94577 0.93671 0.93587 0.93487 0.93128 0.93628 0.92419 0.92536 0.91551 0.91640 0.85427 0.83994 0.83678 0.83938 0.85328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -13.25 19.25 74.32 1.43 -11.82 16 2 C -0.13 -6.55 11.55 31.13 0.36 -6.19 16 3 C 0.27 12.94 5.41 84.57 0.46 13.40 16 4 N -0.60 -28.56 2.37 -712.55 -1.69 -30.25 16 5 C -0.26 -13.58 8.04 84.03 0.68 -12.91 16 6 H 0.08 4.03 6.99 -2.91 -0.02 4.01 16 7 C -0.05 -2.59 4.81 84.86 0.41 -2.19 16 8 N -0.91 -52.75 9.62 21.65 0.21 -52.55 16 9 Si 0.95 44.68 29.61 68.60 2.03 46.71 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 C 0.16 6.18 5.18 86.38 0.45 6.63 16 14 C -0.10 -3.27 2.83 -10.79 -0.03 -3.30 16 15 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 16 C -0.13 -4.47 8.31 71.98 0.60 -3.88 16 17 C 0.08 2.09 5.32 71.98 0.38 2.47 16 18 O -0.40 -11.34 9.86 -148.98 -1.47 -12.81 16 19 C 0.10 2.16 6.06 71.23 0.43 2.59 16 20 C -0.11 -2.36 5.51 -19.87 -0.11 -2.47 16 21 C -0.12 -2.35 9.70 22.27 0.22 -2.14 16 22 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 23 C -0.12 -1.94 10.05 22.27 0.22 -1.72 16 24 C -0.13 -2.25 10.05 22.27 0.22 -2.02 16 25 C -0.12 -2.33 9.70 22.27 0.22 -2.11 16 26 H 0.22 8.05 7.80 -4.41 -0.03 8.02 16 27 H 0.06 3.44 6.53 -2.39 -0.02 3.43 16 28 H 0.06 2.52 8.12 -2.39 -0.02 2.50 16 29 H 0.24 14.06 8.31 -92.71 -0.77 13.29 16 30 H 0.04 1.68 8.07 -2.38 -0.02 1.66 16 31 H 0.05 1.82 8.04 -2.39 -0.02 1.80 16 32 H 0.05 1.59 7.82 -2.39 -0.02 1.57 16 33 H 0.05 2.08 6.13 -2.39 -0.01 2.06 16 34 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.07 1.26 8.08 -2.39 -0.02 1.25 16 38 H 0.07 1.26 8.09 -2.39 -0.02 1.24 16 39 H 0.13 2.34 8.06 -2.91 -0.02 2.31 16 40 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16 41 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 42 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 43 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -64.00 361.43 6.19 -57.81 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.95 Total: 18.78 kcal Atomic # 6 Polarization: -33.85 SS G_CDS: 6.15 Total: -27.70 kcal Atomic # 7 Polarization: -81.32 SS G_CDS: -1.48 Total: -82.79 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -1.47 Total: -12.81 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -64.00 6.19 -57.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886188058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.526 kcal (2) G-P(sol) polarization free energy of solvation -64.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds