Wall clock time and date at job start Tue Mar 31 2020 05:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30989 * 1 3 3 C 1.50699 * 120.00379 * 2 1 4 4 C 1.52992 * 109.47388 * 125.00037 * 3 2 1 5 5 C 1.53000 * 109.47133 * 180.02562 * 4 3 2 6 6 N 1.46501 * 109.47238 * 180.02562 * 5 4 3 7 7 C 1.46504 * 119.99838 * 269.99843 * 6 5 4 8 8 C 1.53001 * 109.47064 * 280.70706 * 7 6 5 9 9 C 1.34775 * 120.00229 * 89.99959 * 6 5 4 10 10 O 1.21584 * 119.99917 * 6.64392 * 9 6 5 11 11 C 1.47642 * 120.00164 * 186.64836 * 9 6 5 12 12 C 1.40013 * 119.89685 * 148.74141 * 11 9 6 13 13 C 1.36315 * 120.10623 * 180.25517 * 12 11 9 14 14 C 1.40895 * 119.89256 * 359.51604 * 13 12 11 15 15 C 1.41110 * 120.10457 * 180.23150 * 14 13 12 16 16 H 1.08001 * 119.99807 * 209.70096 * 15 14 13 17 17 C 1.40221 * 119.99953 * 29.70146 * 15 14 13 18 18 N 1.30651 * 120.00019 * 10.75346 * 17 15 14 19 19 Si 1.86804 * 120.00031 * 190.75710 * 17 15 14 20 20 H 1.48494 * 109.46680 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47087 * 119.99758 * 19 17 15 22 22 H 1.48505 * 109.46814 * 239.99690 * 19 17 15 23 23 C 1.40892 * 119.79128 * 0.50433 * 14 13 12 24 24 C 1.36318 * 119.88985 * 359.72848 * 23 14 13 25 25 H 1.08003 * 120.00122 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.00227 * 180.02562 * 1 2 3 27 27 H 1.08003 * 120.00122 * 180.02562 * 2 1 3 28 28 H 1.09009 * 109.47022 * 5.00051 * 3 2 1 29 29 H 1.09006 * 109.47487 * 245.00608 * 3 2 1 30 30 H 1.09004 * 109.47177 * 60.00456 * 4 3 2 31 31 H 1.09003 * 109.47381 * 300.00188 * 4 3 2 32 32 H 1.09002 * 109.47695 * 60.00195 * 5 4 3 33 33 H 1.09007 * 109.47494 * 299.99799 * 5 4 3 34 34 H 1.08997 * 109.47130 * 40.71148 * 7 6 5 35 35 H 1.09003 * 109.47119 * 160.70680 * 7 6 5 36 36 H 1.09000 * 109.46995 * 180.02562 * 8 7 6 37 37 H 1.08991 * 109.47073 * 300.00179 * 8 7 6 38 38 H 1.09000 * 109.46682 * 60.00144 * 8 7 6 39 39 H 1.07998 * 119.94774 * 359.97438 * 12 11 9 40 40 H 1.07998 * 120.05478 * 179.72422 * 13 12 11 41 41 H 0.97000 * 119.99585 * 179.97438 * 18 17 15 42 42 H 1.07993 * 120.05265 * 179.71341 * 23 14 13 43 43 H 1.08007 * 119.94396 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1815 5 6 3.7996 2.6583 1.1819 6 7 4.7303 2.6848 2.3129 7 6 4.2958 3.2172 3.6068 8 6 4.3349 4.7462 3.5683 9 6 5.9863 2.2196 2.1632 10 8 6.3856 1.8905 1.0629 11 6 6.8774 2.1094 3.3352 12 6 7.8483 1.1016 3.3815 13 6 8.6698 0.9928 4.4638 14 6 8.5475 1.9028 5.5325 15 6 9.3989 1.7972 6.6529 16 1 9.0539 2.1165 7.6252 17 6 10.6928 1.2777 6.5038 18 7 11.1870 1.0882 5.3093 19 14 11.7098 0.8565 8.0130 20 1 10.9278 1.1622 9.2378 21 1 12.0524 -0.5882 7.9916 22 1 12.9578 1.6614 8.0092 23 6 7.5688 2.9149 5.4815 24 6 6.7486 3.0129 4.3971 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3585 2.1317 0.0896 29 1 2.6212 1.4026 -0.9315 30 1 3.7400 0.5065 1.0919 31 1 2.4773 1.2355 2.1130 32 1 3.0945 3.4847 1.2717 33 1 4.3574 2.7562 0.2505 34 1 3.2784 2.8848 3.8132 35 1 4.9619 2.8563 4.3904 36 1 4.0120 5.1423 4.5311 37 1 5.3522 5.0785 3.3618 38 1 3.6687 5.1070 2.7846 39 1 7.9434 0.4066 2.5603 40 1 9.4154 0.2123 4.5006 41 1 12.0822 0.7292 5.2062 42 1 7.4683 3.6118 6.3004 43 1 5.9983 3.7887 4.3569 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890811721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:10 Heat of formation + Delta-G solvation = 10.079344 kcal Electronic energy + Delta-G solvation = -22199.055739 eV Core-core repulsion = 19016.792903 eV Total energy + Delta-G solvation = -3182.262836 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.71631 -37.27668 -36.23891 -35.36519 -33.84305 -32.13571 -30.16071 -29.78429 -29.34423 -26.58175 -25.13717 -23.15021 -22.19112 -21.29405 -20.77679 -19.92610 -18.62561 -17.63833 -16.54454 -16.01171 -15.45037 -15.35492 -14.79156 -14.68099 -14.32746 -13.78386 -13.45650 -13.36124 -13.14242 -12.62234 -12.49048 -12.33635 -12.02636 -11.88800 -11.81509 -11.73756 -11.45446 -11.28939 -11.20953 -11.13775 -11.01840 -10.70831 -10.59250 -10.42431 -9.88637 -9.49808 -9.43773 -9.36623 -8.87874 -8.23752 -7.64729 -7.44870 -6.91159 -4.57412 2.14035 2.29605 2.93047 2.98302 3.00399 3.03684 3.51739 3.77177 3.82180 4.55435 4.71735 4.90022 5.08914 5.15466 5.29415 5.33927 5.39011 5.48165 5.52949 5.58762 5.69178 5.78195 5.85127 5.86624 5.93998 6.04167 6.13151 6.23199 6.27650 6.30797 6.40583 6.49075 6.64161 6.82509 6.87857 7.03561 7.06672 7.14476 7.47729 7.61131 7.79243 7.89578 8.05974 8.15064 8.47026 8.68239 8.78322 9.01016 10.00940 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.026841 B = 0.003254 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.929507 B = 8603.430479 C = 8992.420244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.092 4.092 4 C -0.129 4.129 5 C 0.118 3.882 6 N -0.618 5.618 7 C 0.073 3.927 8 C -0.174 4.174 9 C 0.573 3.427 10 O -0.566 6.566 11 C -0.272 4.272 12 C -0.043 4.043 13 C -0.172 4.172 14 C 0.127 3.873 15 C -0.450 4.450 16 H 0.083 0.917 17 C 0.071 3.929 18 N -0.781 5.781 19 Si 0.914 3.086 20 H -0.259 1.259 21 H -0.270 1.270 22 H -0.272 1.272 23 C -0.231 4.231 24 C -0.084 4.084 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.108 0.892 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.124 0.876 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.096 0.904 40 H 0.121 0.879 41 H 0.284 0.716 42 H 0.097 0.903 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.757 1.768 -2.955 14.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.163 4.163 3 C -0.130 4.130 4 C -0.168 4.168 5 C -0.006 4.006 6 N -0.351 5.351 7 C -0.049 4.049 8 C -0.233 4.233 9 C 0.369 3.631 10 O -0.447 6.447 11 C -0.276 4.276 12 C -0.062 4.062 13 C -0.191 4.191 14 C 0.124 3.876 15 C -0.478 4.478 16 H 0.101 0.899 17 C -0.148 4.148 18 N -0.406 5.406 19 Si 0.738 3.262 20 H -0.182 1.182 21 H -0.195 1.195 22 H -0.198 1.198 23 C -0.251 4.251 24 C -0.102 4.102 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.126 0.874 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.142 0.858 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.114 0.886 40 H 0.139 0.861 41 H 0.096 0.904 42 H 0.116 0.884 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.320 1.529 -3.656 13.897 hybrid contribution 0.489 -0.160 0.601 0.791 sum -12.831 1.370 -3.055 13.261 Atomic orbital electron populations 1.23802 0.95927 1.01610 1.02678 1.23016 0.95990 0.98794 0.98541 1.20713 0.97989 0.95149 0.99143 1.21902 0.97895 0.99112 0.97889 1.21303 0.91859 0.96450 0.90956 1.47806 1.12094 1.63889 1.11328 1.22415 1.01422 0.93488 0.87586 1.22252 1.02593 0.96533 1.01874 1.18739 0.80534 0.74842 0.89023 1.90642 1.75159 1.51447 1.27428 1.18924 1.05258 1.06469 0.96997 1.20435 0.93146 0.95874 0.96782 1.21042 1.01229 1.01441 0.95426 1.17810 0.89481 0.88071 0.92235 1.19802 0.96937 1.35109 0.95960 0.89913 1.26061 0.98638 0.92770 0.97356 1.69733 1.16412 1.30843 1.23567 0.86152 0.79436 0.79006 0.81562 1.18243 1.19538 1.19762 1.20765 1.03000 1.01740 0.99565 1.21245 0.97598 0.97968 0.93415 0.88738 0.88735 0.87431 0.91611 0.90760 0.91353 0.91939 0.91464 0.90165 0.92008 0.85825 0.91557 0.91667 0.92730 0.88624 0.86089 0.90430 0.88447 0.85899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.81 14.32 29.02 0.42 -1.40 16 2 C -0.15 -1.46 9.52 -36.02 -0.34 -1.81 16 3 C -0.09 -0.95 5.66 -27.89 -0.16 -1.11 16 4 C -0.13 -1.63 5.52 -26.73 -0.15 -1.78 16 5 C 0.12 1.63 5.44 -4.04 -0.02 1.61 16 6 N -0.62 -10.34 2.49 -174.87 -0.44 -10.77 16 7 C 0.07 1.03 5.59 -4.04 -0.02 1.01 16 8 C -0.17 -2.11 9.16 37.16 0.34 -1.77 16 9 C 0.57 12.28 7.43 -12.42 -0.09 12.18 16 10 O -0.57 -13.72 16.27 5.29 0.09 -13.63 16 11 C -0.27 -6.21 5.59 -104.73 -0.59 -6.79 16 12 C -0.04 -1.05 9.53 -39.61 -0.38 -1.43 16 13 C -0.17 -4.41 8.59 -39.27 -0.34 -4.74 16 14 C 0.13 3.23 5.54 -106.80 -0.59 2.64 16 15 C -0.45 -11.24 9.05 -37.75 -0.34 -11.58 16 16 H 0.08 1.96 7.87 -52.49 -0.41 1.55 16 17 C 0.07 1.71 5.25 -17.31 -0.09 1.62 16 18 N -0.78 -19.52 10.89 55.56 0.61 -18.91 16 19 Si 0.91 17.70 29.57 -169.99 -5.03 12.68 16 20 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 21 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 22 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 23 C -0.23 -5.28 9.73 -39.27 -0.38 -5.67 16 24 C -0.08 -1.77 7.38 -39.61 -0.29 -2.06 16 25 H 0.09 0.76 7.84 -52.48 -0.41 0.35 16 26 H 0.09 0.74 8.06 -52.49 -0.42 0.32 16 27 H 0.11 1.08 8.06 -52.48 -0.42 0.66 16 28 H 0.07 0.60 7.79 -51.92 -0.40 0.19 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.76 7.66 -51.93 -0.40 0.37 16 33 H 0.08 1.24 7.34 -51.93 -0.38 0.86 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.12 1.98 3.89 -52.72 -0.21 1.77 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.91 7.11 -51.93 -0.37 0.54 16 38 H 0.05 0.60 7.73 -51.93 -0.40 0.20 16 39 H 0.10 2.30 7.93 -52.49 -0.42 1.88 16 40 H 0.12 3.19 6.28 -52.49 -0.33 2.86 16 41 H 0.28 6.43 8.29 -40.82 -0.34 6.09 16 42 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 43 H 0.12 2.16 2.81 -52.48 -0.15 2.01 16 LS Contribution 351.27 15.07 5.29 5.29 Total: -1.00 -28.54 351.27 -8.90 -37.43 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -6.39 Total: 8.99 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -3.03 Total: -21.08 kcal Atomic # 7 Polarization: -29.85 SS G_CDS: 0.17 Total: -29.68 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.09 Total: -13.63 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.68 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.54 -8.90 -37.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890811721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.514 kcal (2) G-P(sol) polarization free energy of solvation -28.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds