Wall clock time and date at job start Tue Mar 31 2020 06:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99870 * 2 1 4 4 H 1.48501 * 109.47100 * 240.00077 * 3 2 1 5 5 H 1.48496 * 109.47086 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47493 * 119.99610 * 3 2 1 7 7 C 1.37878 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99841 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00328 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.53602 * 299.89884 * 9 7 2 11 11 C 1.53118 * 109.50415 * 59.99859 * 9 7 2 12 12 C 1.53124 * 109.16173 * 177.59567 * 11 9 7 13 13 C 1.53034 * 109.28080 * 302.34585 * 12 11 9 14 14 N 1.46850 * 109.51948 * 59.17778 * 13 12 11 15 15 C 1.39006 * 110.99440 * 174.16169 * 14 13 12 16 16 C 1.39155 * 119.75845 * 56.04748 * 15 14 13 17 17 C 1.38133 * 118.86395 * 180.02562 * 16 15 14 18 18 C 1.39253 * 118.83373 * 359.97438 * 17 16 15 19 19 C 1.37638 * 119.34597 * 359.85346 * 18 17 16 20 20 N 1.32145 * 119.75583 * 236.01079 * 15 14 13 21 21 C 1.50837 * 121.43869 * 180.24047 * 19 18 17 22 22 C 1.52871 * 109.88809 * 343.13438 * 21 19 18 23 23 N 1.46955 * 108.66625 * 50.55977 * 22 21 19 24 24 C 1.46654 * 110.12942 * 288.71250 * 23 22 21 25 25 C 1.46841 * 111.19809 * 298.25571 * 14 13 12 26 26 H 0.96988 * 120.00323 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.52517 * 57.69385 * 11 9 7 28 28 H 1.09005 * 109.52217 * 297.49908 * 11 9 7 29 29 H 1.09003 * 109.50200 * 182.40271 * 12 11 9 30 30 H 1.09005 * 109.50011 * 62.28805 * 12 11 9 31 31 H 1.09001 * 109.45888 * 299.16381 * 13 12 11 32 32 H 1.08996 * 109.45616 * 179.18637 * 13 12 11 33 33 H 1.08000 * 120.56617 * 0.04264 * 16 15 14 34 34 H 1.08000 * 120.58695 * 180.02562 * 17 16 15 35 35 H 1.09002 * 109.38922 * 103.23645 * 21 19 18 36 36 H 1.08996 * 109.38874 * 223.03423 * 21 19 18 37 37 H 1.08996 * 109.62389 * 170.20177 * 22 21 19 38 38 H 1.09005 * 109.62077 * 290.76145 * 22 21 19 39 39 H 1.00898 * 111.03346 * 165.34587 * 23 22 21 40 40 H 1.08998 * 109.30411 * 291.98739 * 24 23 22 41 41 H 1.09007 * 109.29767 * 172.61085 * 24 23 22 42 42 H 1.09004 * 109.46273 * 181.76006 * 25 14 13 43 43 H 1.08996 * 109.47072 * 301.73050 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6251 -2.5586 0.8909 11 6 0.3710 -2.5813 -1.2497 12 6 -0.3446 -3.9349 -1.2725 13 6 0.6955 -5.0570 -1.2399 14 7 1.5113 -4.9347 -0.0250 15 6 2.3794 -6.0129 0.1025 16 6 3.2679 -6.3096 -0.9265 17 6 4.1220 -7.3854 -0.7806 18 6 4.0639 -8.1348 0.3917 19 6 3.1636 -7.7847 1.3722 20 7 2.3554 -6.7480 1.2004 21 6 3.0645 -8.5598 2.6623 22 6 3.7444 -9.9200 2.5054 23 7 5.0882 -9.7125 1.9480 24 6 4.9943 -9.3083 0.5414 25 6 2.2450 -3.6629 -0.0038 26 1 -0.4850 0.8399 -0.0004 27 1 0.9925 -2.4829 -2.1398 28 1 -0.3670 -1.7794 -1.2290 29 1 -0.9398 -4.0166 -2.1820 30 1 -0.9958 -4.0168 -0.4022 31 1 1.3376 -4.9825 -2.1176 32 1 0.1886 -6.0219 -1.2414 33 1 3.2895 -5.7089 -1.8238 34 1 4.8230 -7.6405 -1.5615 35 1 3.5543 -8.0002 3.4593 36 1 2.0148 -8.7072 2.9161 37 1 3.8249 -10.4035 3.4789 38 1 3.1604 -10.5454 1.8302 39 1 5.6542 -10.5417 2.0491 40 1 4.6184 -10.1438 -0.0492 41 1 5.9845 -9.0317 0.1792 42 1 2.8637 -3.6154 0.8923 43 1 2.8798 -3.5950 -0.8872 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166740321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:48 Heat of formation + Delta-G solvation = 42.394073 kcal Electronic energy + Delta-G solvation = -22812.520066 eV Core-core repulsion = 19663.951253 eV Total energy + Delta-G solvation = -3148.568813 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.73027 -38.56520 -36.67147 -33.74180 -33.28422 -31.93926 -30.22946 -29.96961 -29.46266 -24.97208 -24.86199 -23.95395 -22.95312 -22.02916 -21.47578 -19.99438 -18.50100 -17.20421 -17.01033 -16.02475 -15.78736 -15.22237 -14.95584 -14.56247 -14.47167 -14.30287 -14.00578 -13.45647 -13.25112 -13.08089 -12.61440 -12.54581 -12.42801 -12.24040 -11.78552 -11.75760 -11.66848 -11.09698 -10.92807 -10.75964 -10.69908 -10.15428 -9.88074 -9.65366 -9.59272 -9.39927 -9.14693 -8.86478 -8.74678 -8.40914 -8.28465 -7.77739 -5.96492 -4.02927 1.17241 1.39757 3.33813 3.38399 3.40881 3.79928 3.82197 3.90484 4.45416 4.50761 4.64996 4.82672 4.99539 5.04038 5.08059 5.14012 5.28531 5.33600 5.37903 5.52709 5.64664 5.68470 5.72716 5.77095 5.97344 5.98482 6.08608 6.19585 6.28943 6.34411 6.45165 6.58511 6.60995 6.67835 6.71559 6.93555 7.04494 7.17889 7.38993 7.53734 7.71860 7.76982 8.08125 8.16548 8.42082 8.46586 9.00247 9.61214 11.09588 Molecular weight = 287.17amu Principal moments of inertia in cm(-1) A = 0.026421 B = 0.003675 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.514372 B = 7616.700589 C = 7938.840262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.053 0.947 9 C 0.056 3.944 10 H 0.038 0.962 11 C -0.111 4.111 12 C -0.117 4.117 13 C 0.074 3.926 14 N -0.503 5.503 15 C 0.333 3.667 16 C -0.204 4.204 17 C -0.064 4.064 18 C -0.154 4.154 19 C 0.153 3.847 20 N -0.472 5.472 21 C -0.064 4.064 22 C 0.056 3.944 23 N -0.685 5.685 24 C 0.107 3.893 25 C 0.081 3.919 26 H 0.261 0.739 27 H 0.031 0.969 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.030 0.970 32 H 0.059 0.941 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.037 0.963 39 H 0.346 0.654 40 H 0.043 0.957 41 H 0.086 0.914 42 H 0.061 0.939 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.001 -19.868 -0.847 21.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.555 4.555 8 H 0.071 0.929 9 C 0.037 3.963 10 H 0.056 0.944 11 C -0.149 4.149 12 C -0.155 4.155 13 C -0.053 4.053 14 N -0.226 5.226 15 C 0.101 3.899 16 C -0.228 4.228 17 C -0.091 4.091 18 C -0.156 4.156 19 C 0.015 3.985 20 N -0.182 5.182 21 C -0.102 4.102 22 C -0.074 4.074 23 N -0.316 5.316 24 C -0.023 4.023 25 C -0.044 4.044 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.112 0.888 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.055 0.945 39 H 0.164 0.836 40 H 0.061 0.939 41 H 0.104 0.896 42 H 0.079 0.921 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 5.979 -18.864 0.467 19.795 hybrid contribution 1.393 -0.036 -1.914 2.368 sum 7.373 -18.900 -1.447 20.339 Atomic orbital electron populations 1.69873 1.05828 1.26500 1.50417 1.24917 0.94835 0.98924 0.95039 0.86670 0.79606 0.83205 0.78575 1.20376 1.21289 1.20271 1.21066 0.92802 0.90520 1.51088 0.92851 1.18684 0.92543 0.89888 0.95164 0.94415 1.21681 1.00124 0.94714 0.98419 1.21698 0.97022 0.96113 1.00650 1.22077 0.95224 0.99366 0.88649 1.58780 1.23484 1.00654 1.39636 1.19738 0.90173 0.91547 0.88458 1.22617 0.98460 0.99616 1.02064 1.21280 0.97532 0.93808 0.96460 1.20296 0.99944 0.99635 0.95746 1.20800 0.90553 0.92049 0.95089 1.67208 1.22661 1.04715 1.23620 1.20443 1.01704 0.94127 0.93922 1.21979 0.89169 0.96303 0.99957 1.60553 1.14002 1.40112 1.16886 1.20622 0.98445 0.94185 0.89057 1.22392 0.96362 0.86465 0.99215 0.92946 0.94978 0.88801 0.93019 0.91721 0.95136 0.92289 0.84930 0.85205 0.89067 0.89356 0.89769 0.94477 0.83557 0.93939 0.89551 0.92060 0.95593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.35 11.35 55.43 0.63 -24.72 16 2 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.26 8.56 -34.44 -0.29 -14.55 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 9 C 0.06 1.43 2.26 -91.69 -0.21 1.22 16 10 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 11 C -0.11 -2.62 5.02 -26.61 -0.13 -2.75 16 12 C -0.12 -2.30 6.09 -26.65 -0.16 -2.46 16 13 C 0.07 1.35 5.05 -3.83 -0.02 1.33 16 14 N -0.50 -10.24 4.70 -173.30 -0.82 -11.06 16 15 C 0.33 6.18 5.68 -155.23 -0.88 5.30 16 16 C -0.20 -3.20 8.74 -39.28 -0.34 -3.54 16 17 C -0.06 -0.83 9.78 -39.24 -0.38 -1.22 16 18 C -0.15 -2.01 5.80 -104.56 -0.61 -2.62 16 19 C 0.15 2.30 6.66 -82.43 -0.55 1.75 16 20 N -0.47 -8.73 10.25 -8.65 -0.09 -8.82 16 21 C -0.06 -0.75 6.19 -27.88 -0.17 -0.92 16 22 C 0.06 0.48 6.56 -3.86 -0.03 0.46 16 23 N -0.68 -6.04 6.88 -115.38 -0.79 -6.83 16 24 C 0.11 1.01 6.34 -5.20 -0.03 0.97 16 25 C 0.08 1.81 4.43 -3.84 -0.02 1.79 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.09 2.46 6.15 -51.93 -0.32 2.14 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.03 0.53 7.13 -51.93 -0.37 0.16 16 32 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 33 H 0.13 1.96 7.12 -52.49 -0.37 1.59 16 34 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.04 0.31 8.04 -51.93 -0.42 -0.11 16 39 H 0.35 2.10 8.90 -39.29 -0.35 1.75 16 40 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 1.43 8.10 -51.93 -0.42 1.00 16 43 H 0.03 0.56 7.76 -51.93 -0.40 0.16 16 LS Contribution 335.21 15.07 5.05 5.05 Total: -1.00 -30.70 335.21 -11.81 -42.51 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.84 Total: 1.09 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -3.92 Total: -13.56 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -1.07 Total: -51.43 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.70 -11.81 -42.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.901 kcal (2) G-P(sol) polarization free energy of solvation -30.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds