Wall clock time and date at job start Tue Mar 31 2020 06:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99875 * 2 1 4 4 H 1.48495 * 109.46966 * 239.99988 * 3 2 1 5 5 H 1.48502 * 109.47302 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47161 * 120.00019 * 3 2 1 7 7 C 1.37875 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00090 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99871 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.50211 * 299.91702 * 9 7 2 11 11 C 1.53117 * 109.50471 * 59.99479 * 9 7 2 12 12 C 1.53120 * 109.16107 * 177.63640 * 11 9 7 13 13 C 1.53045 * 109.27790 * 302.34587 * 12 11 9 14 14 N 1.46847 * 109.51830 * 59.17838 * 13 12 11 15 15 C 1.38545 * 110.99309 * 174.15951 * 14 13 12 16 16 C 1.39664 * 120.52907 * 56.02719 * 15 14 13 17 17 C 1.38086 * 118.33067 * 179.97438 * 16 15 14 18 18 C 1.50696 * 120.39779 * 180.02562 * 17 16 15 19 19 C 1.53783 * 113.61600 * 61.62683 * 18 17 16 20 20 C 1.53782 * 87.08075 * 220.01684 * 19 18 17 21 21 C 1.53780 * 87.07974 * 25.43429 * 20 19 18 22 22 N 1.32576 * 119.19893 * 0.02562 * 17 16 15 23 23 C 1.31765 * 121.01510 * 0.02562 * 22 17 16 24 24 N 1.31781 * 121.83066 * 359.97010 * 23 22 17 25 25 C 1.46842 * 111.20030 * 298.25289 * 14 13 12 26 26 H 0.96995 * 119.99723 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.52366 * 57.73298 * 11 9 7 28 28 H 1.09003 * 109.52788 * 297.53890 * 11 9 7 29 29 H 1.09003 * 109.50703 * 182.40309 * 12 11 9 30 30 H 1.09003 * 109.50185 * 62.28669 * 12 11 9 31 31 H 1.08999 * 109.45749 * 299.16304 * 13 12 11 32 32 H 1.08992 * 109.45281 * 179.19033 * 13 12 11 33 33 H 1.07993 * 120.83842 * 0.03816 * 16 15 14 34 34 H 1.09003 * 112.84512 * 192.93453 * 18 17 16 35 35 H 1.08993 * 113.61262 * 334.56749 * 19 18 17 36 36 H 1.09005 * 113.61052 * 105.46847 * 19 18 17 37 37 H 1.09004 * 113.61338 * 270.88394 * 20 19 18 38 38 H 1.08994 * 113.69142 * 139.99370 * 20 19 18 39 39 H 1.09003 * 113.61551 * 220.01650 * 21 20 19 40 40 H 1.08993 * 113.69527 * 89.12888 * 21 20 19 41 41 H 1.07993 * 119.08314 * 179.97438 * 23 22 17 42 42 H 1.09004 * 109.46229 * 181.75991 * 25 14 13 43 43 H 1.08994 * 109.46878 * 301.73662 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6250 -2.5578 0.8908 11 6 0.3709 -2.5813 -1.2497 12 6 -0.3456 -3.9343 -1.2719 13 6 0.6939 -5.0571 -1.2389 14 7 1.5098 -4.9348 -0.0241 15 6 2.3744 -6.0098 0.1034 16 6 3.2722 -6.3234 -0.9194 17 6 4.1137 -7.4042 -0.7443 18 6 5.1010 -7.7837 -1.8177 19 6 6.1361 -6.6868 -2.1183 20 6 5.9777 -7.0540 -3.6032 21 6 4.5726 -7.5664 -3.2454 22 7 4.0425 -8.1039 0.3795 23 6 3.1834 -7.7830 1.3258 24 7 2.3621 -6.7601 1.2011 25 6 2.2443 -3.6635 -0.0034 26 1 -0.4849 0.8400 0.0004 27 1 0.9923 -2.4836 -2.1397 28 1 -0.3667 -1.7789 -1.2293 29 1 -0.9408 -4.0161 -2.1813 30 1 -0.9968 -4.0156 -0.4015 31 1 1.3360 -4.9834 -2.1166 32 1 0.1865 -6.0217 -1.2401 33 1 3.3083 -5.7348 -1.8241 34 1 5.5400 -8.7688 -1.6597 35 1 5.7897 -5.6818 -1.8776 36 1 7.1275 -6.9009 -1.7189 37 1 6.6577 -7.8392 -3.9338 38 1 5.9713 -6.1914 -4.2694 39 1 4.3016 -8.4905 -3.7560 40 1 3.7977 -6.8029 -3.3127 41 1 3.1517 -8.3748 2.2286 42 1 2.8630 -3.6160 0.8928 43 1 2.8791 -3.5962 -0.8869 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166740887.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:33 Heat of formation + Delta-G solvation = 69.478529 kcal Electronic energy + Delta-G solvation = -23017.990917 eV Core-core repulsion = 19870.596574 eV Total energy + Delta-G solvation = -3147.394343 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.26797 -38.96132 -38.15687 -34.39591 -33.02354 -32.07899 -30.27816 -29.90444 -26.52587 -25.88459 -25.06306 -24.74091 -23.35961 -21.71942 -21.33509 -19.59310 -18.84571 -17.46719 -17.36539 -16.14201 -15.59200 -15.39070 -15.10010 -14.94911 -14.56481 -14.28035 -14.02605 -13.49441 -12.88512 -12.74844 -12.66656 -12.59755 -12.52184 -12.39901 -11.85945 -11.10606 -11.02792 -10.97654 -10.89809 -10.79962 -10.76669 -10.49935 -10.24540 -10.12459 -9.92242 -9.63888 -9.41968 -9.26886 -9.14519 -8.80406 -8.36609 -7.98196 -6.02661 -4.09548 1.00112 1.14256 3.29553 3.34684 3.36608 3.66574 3.78091 3.96728 4.30544 4.40824 4.47364 4.58430 4.69349 4.71560 4.88694 5.08682 5.27366 5.31535 5.46759 5.50667 5.52771 5.56732 5.60544 5.67205 5.71653 5.72718 5.87100 5.92039 6.03379 6.14577 6.22672 6.32152 6.38351 6.55337 6.60336 6.80468 7.05889 7.10264 7.30371 7.38759 7.66751 7.70325 7.99147 8.08675 8.32574 8.38267 8.93276 9.55070 11.03395 Molecular weight = 287.17amu Principal moments of inertia in cm(-1) A = 0.017441 B = 0.004435 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.988436 B = 6311.845618 C = 6870.381655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.066 3.934 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.053 0.947 9 C 0.057 3.943 10 H 0.039 0.961 11 C -0.112 4.112 12 C -0.117 4.117 13 C 0.073 3.927 14 N -0.503 5.503 15 C 0.376 3.624 16 C -0.253 4.253 17 C 0.191 3.809 18 C -0.067 4.067 19 C -0.128 4.128 20 C -0.139 4.139 21 C -0.133 4.133 22 N -0.535 5.535 23 C 0.304 3.696 24 N -0.511 5.511 25 C 0.081 3.919 26 H 0.261 0.739 27 H 0.032 0.968 28 H 0.095 0.905 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.033 0.967 32 H 0.061 0.939 33 H 0.142 0.858 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.196 0.804 42 H 0.062 0.938 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.565 -14.678 -6.173 17.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.720 3.280 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.072 0.928 9 C 0.038 3.962 10 H 0.057 0.943 11 C -0.150 4.150 12 C -0.155 4.155 13 C -0.054 4.054 14 N -0.226 5.226 15 C 0.138 3.862 16 C -0.279 4.279 17 C 0.046 3.954 18 C -0.086 4.086 19 C -0.166 4.166 20 C -0.177 4.177 21 C -0.171 4.171 22 N -0.250 5.250 23 C 0.014 3.986 24 N -0.226 5.226 25 C -0.044 4.044 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.113 0.887 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.160 0.840 34 H 0.128 0.872 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.212 0.788 42 H 0.081 0.919 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 7.028 -15.066 -4.924 17.338 hybrid contribution 0.968 1.341 -1.244 2.069 sum 7.996 -13.725 -6.168 17.040 Atomic orbital electron populations 1.69870 1.05838 1.26600 1.50188 1.24908 0.94836 0.98946 0.94929 0.86667 0.79620 0.83165 0.78591 1.20351 1.21231 1.20262 1.21029 0.92773 0.90422 1.51407 0.92843 1.18690 0.92492 0.89759 0.95284 0.94305 1.21693 1.00165 0.94740 0.98405 1.21704 0.96948 0.95944 1.00878 1.22115 0.95247 0.99716 0.88296 1.58760 1.23184 1.00611 1.40054 1.20178 0.88046 0.90274 0.87699 1.23250 0.99914 1.01299 1.03415 1.21345 0.92526 0.89446 0.92118 1.21597 0.94917 1.00842 0.91241 1.22976 0.98786 0.98503 0.96344 1.22803 0.96905 1.01459 0.96522 1.23055 0.97599 1.02028 0.94390 1.68205 1.23163 1.31421 1.02185 1.24887 0.86125 0.90776 0.96776 1.68169 1.23881 1.05955 1.24596 1.22440 0.96481 0.86133 0.99376 0.92871 0.94880 0.88664 0.92782 0.91588 0.94885 0.92097 0.83989 0.87189 0.89597 0.90816 0.89870 0.90849 0.90876 0.89507 0.78779 0.91935 0.95321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.71 11.35 55.43 0.63 -24.08 16 2 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 3 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.52 -13.85 8.57 -34.44 -0.30 -14.14 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.06 1.39 2.26 -91.69 -0.21 1.18 16 10 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 11 C -0.11 -2.53 5.02 -26.61 -0.13 -2.66 16 12 C -0.12 -2.19 6.09 -26.65 -0.16 -2.35 16 13 C 0.07 1.26 5.06 -3.83 -0.02 1.24 16 14 N -0.50 -9.71 4.70 -173.05 -0.81 -10.52 16 15 C 0.38 6.65 5.71 -154.78 -0.88 5.77 16 16 C -0.25 -3.80 7.50 -39.10 -0.29 -4.10 16 17 C 0.19 2.62 6.21 -82.33 -0.51 2.11 16 18 C -0.07 -0.70 4.18 -90.96 -0.38 -1.08 16 19 C -0.13 -1.23 7.56 -25.92 -0.20 -1.43 16 20 C -0.14 -1.12 8.08 -25.92 -0.21 -1.33 16 21 C -0.13 -1.20 7.47 -25.92 -0.19 -1.40 16 22 N -0.53 -7.74 10.37 -10.88 -0.11 -7.86 16 23 C 0.30 4.40 12.28 -92.19 -1.13 3.27 16 24 N -0.51 -8.95 10.47 -13.81 -0.14 -9.10 16 25 C 0.08 1.71 4.44 -3.83 -0.02 1.69 16 26 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.10 2.42 6.15 -51.93 -0.32 2.10 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.03 0.53 7.19 -51.93 -0.37 0.16 16 32 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 33 H 0.14 1.98 5.86 -52.49 -0.31 1.67 16 34 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.09 0.93 7.79 -51.93 -0.40 0.53 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.85 6.28 -51.93 -0.33 0.52 16 41 H 0.20 2.08 8.06 -52.49 -0.42 1.66 16 42 H 0.06 1.38 8.10 -51.93 -0.42 0.96 16 43 H 0.03 0.59 7.83 -51.93 -0.41 0.18 16 LS Contribution 338.20 15.07 5.10 5.10 Total: -1.00 -29.05 338.20 -11.84 -40.89 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.75 Total: 1.27 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -4.73 Total: -11.54 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: -0.44 Total: -51.56 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.05 -11.84 -40.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740887.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.368 kcal (2) G-P(sol) polarization free energy of solvation -29.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds