Wall clock time and date at job start Tue Mar 31 2020 06:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99875 * 2 1 4 4 H 1.48495 * 109.46966 * 239.99988 * 3 2 1 5 5 H 1.48502 * 109.47302 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47161 * 120.00019 * 3 2 1 7 7 C 1.37875 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00090 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99871 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.50211 * 299.91702 * 9 7 2 11 11 C 1.53117 * 109.50471 * 59.99479 * 9 7 2 12 12 C 1.53120 * 109.16107 * 177.63640 * 11 9 7 13 13 C 1.53045 * 109.27790 * 302.34587 * 12 11 9 14 14 N 1.46847 * 109.51830 * 59.17838 * 13 12 11 15 15 C 1.38545 * 110.99309 * 174.15951 * 14 13 12 16 16 C 1.39664 * 120.52907 * 56.02719 * 15 14 13 17 17 C 1.38086 * 118.33067 * 179.97438 * 16 15 14 18 18 C 1.50696 * 120.39779 * 180.02562 * 17 16 15 19 19 C 1.53783 * 113.61600 * 61.62683 * 18 17 16 20 20 C 1.53782 * 87.08075 * 220.01684 * 19 18 17 21 21 C 1.53780 * 87.07974 * 25.43429 * 20 19 18 22 22 N 1.32576 * 119.19893 * 0.02562 * 17 16 15 23 23 C 1.31765 * 121.01510 * 0.02562 * 22 17 16 24 24 N 1.31781 * 121.83066 * 359.97010 * 23 22 17 25 25 C 1.46842 * 111.20030 * 298.25289 * 14 13 12 26 26 H 0.96995 * 119.99723 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.52366 * 57.73298 * 11 9 7 28 28 H 1.09003 * 109.52788 * 297.53890 * 11 9 7 29 29 H 1.09003 * 109.50703 * 182.40309 * 12 11 9 30 30 H 1.09003 * 109.50185 * 62.28669 * 12 11 9 31 31 H 1.08999 * 109.45749 * 299.16304 * 13 12 11 32 32 H 1.08992 * 109.45281 * 179.19033 * 13 12 11 33 33 H 1.07993 * 120.83842 * 0.03816 * 16 15 14 34 34 H 1.09003 * 112.84512 * 192.93453 * 18 17 16 35 35 H 1.08993 * 113.61262 * 334.56749 * 19 18 17 36 36 H 1.09005 * 113.61052 * 105.46847 * 19 18 17 37 37 H 1.09004 * 113.61338 * 270.88394 * 20 19 18 38 38 H 1.08994 * 113.69142 * 139.99370 * 20 19 18 39 39 H 1.09003 * 113.61551 * 220.01650 * 21 20 19 40 40 H 1.08993 * 113.69527 * 89.12888 * 21 20 19 41 41 H 1.07993 * 119.08314 * 179.97438 * 23 22 17 42 42 H 1.09004 * 109.46229 * 181.75991 * 25 14 13 43 43 H 1.08994 * 109.46878 * 301.73662 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6250 -2.5578 0.8908 11 6 0.3709 -2.5813 -1.2497 12 6 -0.3456 -3.9343 -1.2719 13 6 0.6939 -5.0571 -1.2389 14 7 1.5098 -4.9348 -0.0241 15 6 2.3744 -6.0098 0.1034 16 6 3.2722 -6.3234 -0.9194 17 6 4.1137 -7.4042 -0.7443 18 6 5.1010 -7.7837 -1.8177 19 6 6.1361 -6.6868 -2.1183 20 6 5.9777 -7.0540 -3.6032 21 6 4.5726 -7.5664 -3.2454 22 7 4.0425 -8.1039 0.3795 23 6 3.1834 -7.7830 1.3258 24 7 2.3621 -6.7601 1.2011 25 6 2.2443 -3.6635 -0.0034 26 1 -0.4849 0.8400 0.0004 27 1 0.9923 -2.4836 -2.1397 28 1 -0.3667 -1.7789 -1.2293 29 1 -0.9408 -4.0161 -2.1813 30 1 -0.9968 -4.0156 -0.4015 31 1 1.3360 -4.9834 -2.1166 32 1 0.1865 -6.0217 -1.2401 33 1 3.3083 -5.7348 -1.8241 34 1 5.5400 -8.7688 -1.6597 35 1 5.7897 -5.6818 -1.8776 36 1 7.1275 -6.9009 -1.7189 37 1 6.6577 -7.8392 -3.9338 38 1 5.9713 -6.1914 -4.2694 39 1 4.3016 -8.4905 -3.7560 40 1 3.7977 -6.8029 -3.3127 41 1 3.1517 -8.3748 2.2286 42 1 2.8630 -3.6160 0.8928 43 1 2.8791 -3.5962 -0.8869 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166740887.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:32 Heat of formation + Delta-G solvation = 54.699158 kcal Electronic energy + Delta-G solvation = -23018.631799 eV Core-core repulsion = 19870.596574 eV Total energy + Delta-G solvation = -3148.035224 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.43957 -40.10680 -39.34005 -36.06004 -34.45078 -33.59035 -31.86552 -31.45027 -27.47904 -26.99136 -26.62589 -26.07229 -24.60843 -23.32794 -22.67650 -20.52688 -20.39886 -18.87025 -18.60456 -17.88774 -16.77411 -16.64391 -16.24701 -16.21204 -16.09245 -15.39526 -15.38408 -15.09617 -14.48078 -14.36903 -14.20748 -13.50024 -13.45937 -13.44511 -13.33230 -12.85673 -12.72274 -12.62250 -12.11696 -11.95743 -11.86863 -11.83655 -11.65774 -11.47297 -11.29202 -11.14601 -11.03664 -10.75798 -10.52103 -10.44626 -10.37855 -9.42552 -8.09267 -6.23888 -0.18482 -0.02630 1.42627 1.43700 1.51255 2.29308 2.47177 2.64342 2.99718 3.18287 3.36889 3.59498 3.71503 3.74994 3.88162 3.95101 3.96658 4.11642 4.12684 4.24336 4.41800 4.44733 4.52989 4.57291 4.75587 4.77913 4.79802 4.83992 4.86949 4.97959 5.02857 5.03283 5.10185 5.18311 5.23041 5.30866 5.47024 5.51688 5.61869 5.78815 5.86767 6.01458 6.14016 6.32410 6.36417 6.86267 7.14058 7.44161 8.95428 Molecular weight = 287.17amu Principal moments of inertia in cm(-1) A = 0.017441 B = 0.004435 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.988436 B = 6311.845618 C = 6870.381655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.019 3.981 3 Si 0.954 3.046 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.052 0.948 9 C 0.056 3.944 10 H -0.004 1.004 11 C -0.103 4.103 12 C -0.109 4.109 13 C 0.077 3.923 14 N -0.519 5.519 15 C 0.353 3.647 16 C -0.251 4.251 17 C 0.194 3.806 18 C -0.070 4.070 19 C -0.131 4.131 20 C -0.128 4.128 21 C -0.131 4.131 22 N -0.538 5.538 23 C 0.303 3.697 24 N -0.542 5.542 25 C 0.100 3.900 26 H 0.262 0.738 27 H 0.034 0.966 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.152 0.848 34 H 0.121 0.879 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.228 0.772 42 H 0.044 0.956 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.110 -16.082 -7.734 20.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.180 4.180 3 Si 0.779 3.221 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.070 0.930 9 C 0.037 3.963 10 H 0.014 0.986 11 C -0.141 4.141 12 C -0.146 4.146 13 C -0.049 4.049 14 N -0.242 5.242 15 C 0.116 3.884 16 C -0.276 4.276 17 C 0.049 3.951 18 C -0.089 4.089 19 C -0.169 4.169 20 C -0.165 4.165 21 C -0.169 4.169 22 N -0.252 5.252 23 C 0.015 3.985 24 N -0.258 5.258 25 C -0.026 4.026 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.082 0.918 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.169 0.831 34 H 0.139 0.861 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.120 0.880 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.244 0.756 42 H 0.063 0.937 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.575 -16.486 -6.489 19.683 hybrid contribution 0.511 1.708 -0.706 1.917 sum 9.085 -14.779 -7.195 18.781 Atomic orbital electron populations 1.70016 1.07128 1.27279 1.50726 1.25668 0.95632 1.02181 0.94566 0.85683 0.78446 0.79150 0.78797 1.19356 1.20858 1.20038 1.21384 0.92936 0.91832 1.51524 0.93013 1.18585 0.92787 0.90625 0.94345 0.98620 1.21473 0.99234 0.96127 0.97290 1.21603 0.97129 0.94265 1.01652 1.22118 0.94864 0.99692 0.88225 1.58552 1.23885 1.00356 1.41421 1.20152 0.89030 0.90349 0.88869 1.23242 0.99536 1.01828 1.02972 1.21899 0.92251 0.88491 0.92486 1.21794 0.94602 1.01573 0.90914 1.22984 0.98770 0.97298 0.97846 1.22793 0.96409 1.02044 0.95277 1.23061 0.98050 1.02518 0.93247 1.68335 1.23010 1.31455 1.02446 1.25537 0.85170 0.90060 0.97765 1.68133 1.25436 1.07196 1.25072 1.22012 0.95364 0.86440 0.98792 0.92921 0.94706 0.91795 0.89805 0.93179 0.93173 0.90276 0.83057 0.86132 0.91180 0.89992 0.88019 0.90489 0.89515 0.90297 0.75610 0.93737 0.94548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.29 11.35 21.45 0.24 -52.05 16 2 C 0.02 1.04 5.30 84.65 0.45 1.49 16 3 Si 0.95 43.16 29.54 68.60 2.03 45.18 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.54 -29.55 8.57 25.60 0.22 -29.33 16 8 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 9 C 0.06 2.82 2.26 -11.49 -0.03 2.79 16 10 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 11 C -0.10 -4.75 5.02 30.67 0.15 -4.60 16 12 C -0.11 -4.03 6.09 30.65 0.19 -3.84 16 13 C 0.08 2.58 5.06 86.33 0.44 3.02 16 14 N -0.52 -20.09 4.70 -701.41 -3.29 -23.39 16 15 C 0.35 12.32 5.71 133.18 0.76 13.08 16 16 C -0.25 -7.20 7.50 22.58 0.17 -7.04 16 17 C 0.19 4.99 6.21 42.41 0.26 5.25 16 18 C -0.07 -1.29 4.18 -11.01 -0.05 -1.34 16 19 C -0.13 -2.22 7.56 31.12 0.24 -1.98 16 20 C -0.13 -1.65 8.08 31.12 0.25 -1.40 16 21 C -0.13 -1.99 7.47 31.12 0.23 -1.76 16 22 N -0.54 -14.59 10.37 -188.35 -1.95 -16.55 16 23 C 0.30 8.39 12.28 180.90 2.22 10.61 16 24 N -0.54 -18.78 10.47 -197.60 -2.07 -20.85 16 25 C 0.10 4.33 4.44 86.33 0.38 4.71 16 26 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 27 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.06 3.35 6.15 -2.39 -0.01 3.34 16 29 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.05 1.51 7.19 -2.39 -0.02 1.49 16 32 H 0.08 2.38 8.10 -2.39 -0.02 2.36 16 33 H 0.15 3.98 5.86 -2.91 -0.02 3.96 16 34 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.07 1.42 7.79 -2.39 -0.02 1.40 16 36 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.34 6.28 -2.39 -0.02 1.33 16 41 H 0.23 4.41 8.06 -2.91 -0.02 4.38 16 42 H 0.04 2.04 8.10 -2.38 -0.02 2.02 16 43 H 0.04 1.50 7.83 -2.39 -0.02 1.48 16 Total: -1.00 -64.15 338.20 1.83 -62.31 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.99 Total: 15.68 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: 5.89 Total: -10.34 kcal Atomic # 7 Polarization: -105.76 SS G_CDS: -7.07 Total: -112.83 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -64.15 1.83 -62.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740887.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.014 kcal (2) G-P(sol) polarization free energy of solvation -64.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds