Wall clock time and date at job start Tue Mar 31 2020 06:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35594 * 116.99681 * 2 1 4 4 C 1.38543 * 120.06346 * 359.97438 * 3 2 1 5 5 C 1.37976 * 120.33112 * 180.02562 * 4 3 2 6 6 C 1.40136 * 120.45129 * 359.74843 * 5 4 3 7 7 C 1.47775 * 119.94282 * 180.25558 * 6 5 4 8 8 C 1.32595 * 120.00031 * 0.25495 * 7 6 5 9 9 C 1.50700 * 120.00026 * 180.02562 * 8 7 6 10 10 C 1.53122 * 109.52148 * 239.67949 * 9 8 7 11 11 C 1.53038 * 109.27946 * 182.44075 * 10 9 8 12 12 N 1.46842 * 109.52248 * 59.17710 * 11 10 9 13 13 C 1.46849 * 111.20065 * 298.25574 * 12 11 10 14 14 C 1.53042 * 109.51719 * 61.74617 * 13 12 11 15 15 C 1.38830 * 120.11292 * 0.50758 * 6 5 4 16 16 C 1.40477 * 119.67126 * 359.49344 * 15 6 5 17 17 C 1.41189 * 120.22191 * 180.23037 * 16 15 6 18 18 H 1.08000 * 119.99711 * 204.71978 * 17 16 15 19 19 C 1.39892 * 119.99703 * 24.71977 * 17 16 15 20 20 N 1.30880 * 120.00133 * 17.78183 * 19 17 16 21 21 Si 1.86797 * 119.99763 * 197.77264 * 19 17 16 22 22 H 1.48503 * 109.47329 * 0.02562 * 21 19 17 23 23 H 1.48509 * 109.47298 * 120.00329 * 21 19 17 24 24 H 1.48503 * 109.47617 * 240.00326 * 21 19 17 25 25 H 1.09003 * 109.46914 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47232 * 300.00108 * 1 2 3 27 27 H 1.09001 * 109.47205 * 60.00333 * 1 2 3 28 28 H 1.07994 * 119.83407 * 0.04765 * 4 3 2 29 29 H 1.07995 * 119.77365 * 180.02562 * 5 4 3 30 30 H 1.07999 * 119.99656 * 180.24739 * 7 6 5 31 31 H 1.07999 * 120.00313 * 359.97438 * 8 7 6 32 32 H 1.08999 * 109.52435 * 359.86736 * 9 8 7 33 33 H 1.08997 * 109.50206 * 302.37885 * 10 9 8 34 34 H 1.08997 * 109.50166 * 62.49930 * 10 9 8 35 35 H 1.09001 * 109.45884 * 299.15893 * 11 10 9 36 36 H 1.08999 * 109.46397 * 179.19936 * 11 10 9 37 37 H 1.00894 * 111.00177 * 62.36179 * 12 11 10 38 38 H 1.08999 * 109.46198 * 301.73220 * 13 12 11 39 39 H 1.09001 * 109.46042 * 181.75610 * 13 12 11 40 40 H 1.09002 * 109.50201 * 180.88015 * 14 13 12 41 41 H 1.08995 * 109.53895 * 60.78102 * 14 13 12 42 42 H 1.07997 * 120.16135 * 179.77111 * 15 6 5 43 43 H 0.97000 * 119.99862 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2082 0.0000 4 6 1.2912 2.3709 -0.0005 5 6 1.9118 3.6032 -0.0011 6 6 3.3101 3.6942 0.0042 7 6 3.9630 5.0199 0.0093 8 6 3.2258 6.1220 0.0140 9 6 3.8916 7.4739 0.0185 10 6 3.4650 8.2502 1.2676 11 6 4.0956 9.6442 1.2361 12 7 3.6607 10.3523 0.0254 13 6 4.1002 9.6503 -1.1872 14 6 3.4695 8.2565 -1.2280 15 6 4.0832 2.5410 -0.0006 16 6 3.4566 1.2838 0.0000 17 6 4.2314 0.1035 0.0001 18 1 3.8174 -0.8142 -0.3906 19 6 5.5354 0.1230 0.5062 20 7 5.9214 1.1032 1.2829 21 14 6.7257 -1.2501 0.0738 22 1 6.0494 -2.2304 -0.8133 23 1 7.9051 -0.6808 -0.6265 24 1 7.1693 -1.9307 1.3169 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.2128 2.3124 -0.0002 29 1 1.3157 4.5038 -0.0011 30 1 5.0407 5.0910 0.0093 31 1 2.1482 6.0509 0.0136 32 1 4.9742 7.3468 0.0197 33 1 2.3790 8.3424 1.2854 34 1 3.8004 7.7190 2.1583 35 1 5.1817 9.5514 1.2322 36 1 3.7824 10.2045 2.1170 37 1 2.6606 10.4853 0.0239 38 1 5.1862 9.5575 -1.1797 39 1 3.7900 10.2151 -2.0663 40 1 3.8082 7.7298 -2.1202 41 1 2.3837 8.3482 -1.2498 42 1 5.1609 2.6103 -0.0002 43 1 6.8257 1.1169 1.6335 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243893721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:19 Heat of formation + Delta-G solvation = -20.847023 kcal Electronic energy + Delta-G solvation = -22002.059515 eV Core-core repulsion = 18818.455611 eV Total energy + Delta-G solvation = -3183.603904 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.02066 -38.63466 -36.46255 -34.42747 -33.34045 -30.87133 -30.86629 -29.72849 -27.76989 -26.47222 -25.04955 -23.53537 -22.87125 -21.42884 -20.83365 -19.89671 -18.83112 -17.28545 -16.38395 -16.19237 -15.38498 -14.75131 -14.73180 -14.64249 -14.41101 -14.20263 -13.96375 -13.38695 -13.33416 -12.81255 -12.60115 -12.31816 -12.08570 -11.81076 -11.62968 -11.39140 -11.29666 -11.27127 -11.11603 -10.84992 -10.73083 -10.67388 -10.53543 -10.40315 -10.24224 -9.80052 -9.41134 -9.21725 -8.68360 -8.45314 -7.52241 -6.83549 -6.56364 -4.25673 2.10717 2.77714 3.09964 3.12082 3.17084 3.56389 3.96931 4.21284 4.47812 4.66699 4.70158 4.98198 5.03104 5.12120 5.34323 5.35349 5.45508 5.59352 5.67157 5.74360 5.79937 5.80854 5.81034 5.91419 5.94358 5.95042 6.00984 6.08379 6.19641 6.27144 6.28813 6.46769 6.80723 6.90380 6.98797 7.12196 7.17780 7.24493 7.33978 7.46557 7.66109 7.72486 8.03502 8.18560 8.37270 8.68067 8.83706 9.03985 10.21295 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.016606 B = 0.003767 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.760313 B = 7430.888796 C = 8713.146857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.311 6.311 3 C 0.019 3.981 4 C -0.182 4.182 5 C -0.192 4.192 6 C -0.083 4.083 7 C -0.068 4.068 8 C -0.195 4.195 9 C -0.048 4.048 10 C -0.148 4.148 11 C 0.055 3.945 12 N -0.689 5.689 13 C 0.056 3.944 14 C -0.148 4.148 15 C -0.124 4.124 16 C 0.093 3.907 17 C -0.447 4.447 18 H 0.083 0.917 19 C 0.073 3.927 20 N -0.798 5.798 21 Si 0.908 3.092 22 H -0.260 1.260 23 H -0.273 1.273 24 H -0.275 1.275 25 H 0.082 0.918 26 H 0.040 0.960 27 H 0.039 0.961 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.338 0.662 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.128 0.872 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.515 10.822 -1.788 11.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.226 6.226 3 C -0.025 4.025 4 C -0.201 4.201 5 C -0.212 4.212 6 C -0.083 4.083 7 C -0.086 4.086 8 C -0.213 4.213 9 C -0.066 4.066 10 C -0.187 4.187 11 C -0.074 4.074 12 N -0.317 5.317 13 C -0.074 4.074 14 C -0.187 4.187 15 C -0.144 4.144 16 C 0.090 3.910 17 C -0.476 4.476 18 H 0.101 0.899 19 C -0.143 4.143 20 N -0.425 5.425 21 Si 0.732 3.268 22 H -0.184 1.184 23 H -0.198 1.198 24 H -0.201 1.201 25 H 0.100 0.900 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.155 0.845 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.145 0.855 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.671 11.151 -1.642 11.584 hybrid contribution -0.418 -1.328 -0.016 1.392 sum -3.089 9.824 -1.658 10.430 Atomic orbital electron populations 1.22741 0.81730 1.01764 0.99932 1.85956 1.18239 1.28324 1.90032 1.19359 0.92408 0.82593 1.08168 1.20544 0.97382 0.92859 1.09282 1.20234 0.93294 0.95195 1.12457 1.18677 0.92819 0.92220 1.04589 1.21801 0.98281 0.92149 0.96400 1.22954 0.99351 0.92683 1.06296 1.20149 0.99499 0.93026 0.93938 1.22270 1.00816 0.96927 0.98736 1.22042 1.00445 0.92294 0.92633 1.60699 1.19112 1.49709 1.02149 1.22043 1.00411 0.92341 0.92615 1.22271 1.00838 0.96916 0.98700 1.21296 0.99377 0.89784 1.03903 1.16994 0.87280 0.94038 0.92694 1.19438 0.96608 0.96559 1.35025 0.89916 1.25879 0.98861 0.96903 0.92687 1.69845 1.18990 1.30921 1.22699 0.86262 0.79942 0.81282 0.79271 1.18364 1.19777 1.20051 0.89993 0.94142 0.94220 0.88546 0.88895 0.87888 0.87499 0.91276 0.92096 0.91233 0.91011 0.90946 0.84467 0.91021 0.90966 0.91309 0.92093 0.85472 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.81 101.05 0.99 1.58 16 2 O -0.31 -7.27 9.76 -18.48 -0.18 -7.45 16 3 C 0.02 0.48 6.72 -38.26 -0.26 0.23 16 4 C -0.18 -4.12 9.01 -39.56 -0.36 -4.47 16 5 C -0.19 -4.28 9.40 -38.97 -0.37 -4.65 16 6 C -0.08 -1.91 5.86 -105.07 -0.62 -2.53 16 7 C -0.07 -1.33 9.51 -37.59 -0.36 -1.68 16 8 C -0.19 -3.20 8.20 -36.21 -0.30 -3.50 16 9 C -0.05 -0.63 2.55 -91.65 -0.23 -0.86 16 10 C -0.15 -1.74 5.35 -26.65 -0.14 -1.88 16 11 C 0.06 0.57 6.55 -3.84 -0.03 0.54 16 12 N -0.69 -6.93 6.87 -113.82 -0.78 -7.72 16 13 C 0.06 0.56 6.55 -3.83 -0.03 0.53 16 14 C -0.15 -1.70 5.34 -26.65 -0.14 -1.84 16 15 C -0.12 -3.20 8.41 -38.52 -0.32 -3.52 16 16 C 0.09 2.51 5.58 -106.73 -0.60 1.91 16 17 C -0.45 -12.13 8.71 -37.84 -0.33 -12.46 16 18 H 0.08 2.24 7.64 -52.49 -0.40 1.84 16 19 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 20 N -0.80 -20.65 10.97 55.54 0.61 -20.04 16 21 Si 0.91 18.96 29.59 -169.99 -5.03 13.93 16 22 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 25 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.04 0.65 7.65 -51.93 -0.40 0.26 16 27 H 0.04 0.63 7.65 -51.93 -0.40 0.23 16 28 H 0.10 1.90 6.27 -52.49 -0.33 1.57 16 29 H 0.09 1.84 6.13 -52.49 -0.32 1.52 16 30 H 0.10 1.93 7.86 -52.49 -0.41 1.52 16 31 H 0.11 1.79 6.01 -52.49 -0.32 1.48 16 32 H 0.07 0.94 7.81 -51.93 -0.41 0.54 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.34 3.06 8.86 -39.29 -0.35 2.71 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.13 3.36 6.17 -52.49 -0.32 3.04 16 43 H 0.28 6.55 8.30 -40.82 -0.34 6.22 16 LS Contribution 344.82 15.07 5.20 5.20 Total: -1.00 -28.26 344.82 -9.94 -38.20 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -6.59 Total: 8.72 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: -3.17 Total: -30.84 kcal Atomic # 7 Polarization: -27.58 SS G_CDS: -0.17 Total: -27.76 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.18 Total: -7.45 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.26 -9.94 -38.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243893721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.352 kcal (2) G-P(sol) polarization free energy of solvation -28.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds