Wall clock time and date at job start Tue Mar 31 2020 06:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35590 * 116.99764 * 2 1 4 4 C 1.39118 * 119.89368 * 0.02562 * 3 2 1 5 5 C 1.36420 * 120.45798 * 180.02562 * 4 3 2 6 6 C 1.40932 * 120.23474 * 359.97438 * 5 4 3 7 7 C 1.41255 * 120.10933 * 180.02562 * 6 5 4 8 8 H 1.07993 * 120.00163 * 204.68880 * 7 6 5 9 9 C 1.39854 * 119.99800 * 24.69308 * 7 6 5 10 10 N 1.30900 * 120.00159 * 18.00666 * 9 7 6 11 11 Si 1.86802 * 120.00102 * 198.00444 * 9 7 6 12 12 H 1.48499 * 109.46899 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47236 * 120.00234 * 11 9 7 14 14 H 1.48501 * 109.46946 * 240.00132 * 11 9 7 15 15 C 1.40566 * 119.78372 * 0.02562 * 6 5 4 16 16 C 1.38807 * 119.55094 * 0.25048 * 15 6 5 17 17 C 1.47735 * 120.12144 * 179.75068 * 16 15 6 18 18 C 1.32624 * 120.00063 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00123 * 179.97438 * 18 17 16 20 20 C 1.53118 * 109.52100 * 239.87148 * 19 18 17 21 21 C 1.53051 * 109.27020 * 182.50814 * 20 19 18 22 22 N 1.46836 * 109.57871 * 59.08334 * 21 20 19 23 23 C 1.46849 * 111.20052 * 298.28974 * 22 21 20 24 24 C 1.53039 * 109.52339 * 61.74268 * 23 22 21 25 25 H 1.09001 * 109.46955 * 299.99534 * 1 2 3 26 26 H 1.08999 * 109.47424 * 59.99949 * 1 2 3 27 27 H 1.09000 * 109.47100 * 180.02562 * 1 2 3 28 28 H 1.07993 * 119.77074 * 359.97438 * 4 3 2 29 29 H 1.07998 * 119.88569 * 179.97438 * 5 4 3 30 30 H 0.97001 * 119.99924 * 179.97438 * 10 9 7 31 31 H 1.08004 * 120.22177 * 179.97438 * 15 6 5 32 32 H 1.07994 * 120.00417 * 179.97438 * 17 16 15 33 33 H 1.08001 * 120.00005 * 359.97438 * 18 17 16 34 34 H 1.08998 * 109.52015 * 359.97438 * 19 18 17 35 35 H 1.08998 * 109.50607 * 302.37890 * 20 19 18 36 36 H 1.08999 * 109.50414 * 62.50457 * 20 19 18 37 37 H 1.09001 * 109.40644 * 299.06066 * 21 20 19 38 38 H 1.08999 * 109.45211 * 179.12785 * 21 20 19 39 39 H 1.00903 * 111.00297 * 62.38220 * 22 21 20 40 40 H 1.09000 * 109.46356 * 301.72865 * 23 22 21 41 41 H 1.09004 * 109.46408 * 181.75782 * 23 22 21 42 42 H 1.08996 * 109.50273 * 180.88677 * 24 23 22 43 43 H 1.08995 * 109.53475 * 60.77852 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2081 0.0000 4 6 1.2846 2.3734 0.0005 5 6 1.8919 3.5950 0.0000 6 6 3.2981 3.6885 -0.0005 7 6 3.9242 4.9547 -0.0005 8 1 4.9251 5.0622 -0.3915 9 6 3.2478 6.0691 0.5060 10 7 2.2099 5.9058 1.2867 11 14 3.8255 7.7908 0.0684 12 1 5.0101 7.7038 -0.8229 13 1 2.7340 8.5168 -0.6292 14 1 4.1914 8.5204 1.3090 15 6 4.0757 2.5175 -0.0011 16 6 3.4485 1.2792 -0.0064 17 6 4.2534 0.0404 -0.0126 18 6 5.5778 0.1101 -0.0126 19 6 6.3989 -1.1535 -0.0183 20 6 7.2854 -1.1933 1.2295 21 6 8.1618 -2.4473 1.1866 22 7 8.9904 -2.4273 -0.0254 23 6 8.1600 -2.4374 -1.2366 24 6 7.2848 -1.1823 -1.2670 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2065 2.3106 0.0005 29 1 1.2930 4.4937 0.0000 30 1 1.7410 6.6787 1.6383 31 1 5.1539 2.5808 -0.0019 32 1 3.7635 -0.9220 -0.0163 33 1 6.0679 1.0726 -0.0085 34 1 5.7359 -2.0186 -0.0215 35 1 7.9202 -0.3075 1.2534 36 1 6.6584 -1.2166 2.1208 37 1 7.5266 -3.3330 1.1779 38 1 8.8053 -2.4706 2.0661 39 1 9.6162 -1.6358 -0.0228 40 1 7.5248 -3.3231 -1.2341 41 1 8.8023 -2.4537 -2.1172 42 1 6.6572 -1.1979 -2.1580 43 1 7.9190 -0.2960 -1.2838 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243894607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:16 Heat of formation + Delta-G solvation = -21.884367 kcal Electronic energy + Delta-G solvation = -22088.415006 eV Core-core repulsion = 18904.766119 eV Total energy + Delta-G solvation = -3183.648886 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.06949 -38.71555 -36.47211 -34.60086 -33.18471 -31.16645 -30.83598 -29.46152 -27.99487 -26.67821 -24.72529 -23.67599 -22.83990 -21.58596 -20.69076 -20.01670 -18.69462 -17.15197 -16.86410 -16.04428 -15.47330 -14.87338 -14.81846 -14.70097 -14.33544 -14.22267 -13.79882 -13.35685 -13.14877 -13.01117 -12.63230 -12.28828 -12.03304 -11.93417 -11.78767 -11.59502 -11.26218 -11.23362 -11.07421 -11.05034 -10.66605 -10.61432 -10.55290 -10.40602 -10.04745 -9.75915 -9.48018 -9.28594 -8.88597 -8.42518 -7.40808 -6.80194 -6.75828 -4.29472 2.09939 2.73625 3.06382 3.10152 3.12826 3.59872 3.92918 4.24532 4.26661 4.61177 4.72964 5.00970 5.05391 5.15191 5.37422 5.38927 5.46977 5.59674 5.61942 5.71026 5.75558 5.81982 5.83237 5.86080 5.93304 5.98402 6.03844 6.12776 6.22003 6.23350 6.43721 6.59032 6.76125 6.93441 6.95487 7.10549 7.17496 7.27417 7.31946 7.45869 7.55551 7.86319 7.94529 8.10657 8.38430 8.59000 8.86162 8.92352 10.19011 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.013817 B = 0.004123 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.045706 B = 6788.846775 C = 8405.824090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.329 6.329 3 C 0.014 3.986 4 C -0.180 4.180 5 C -0.121 4.121 6 C 0.085 3.915 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.075 3.925 10 N -0.801 5.801 11 Si 0.906 3.094 12 H -0.261 1.261 13 H -0.273 1.273 14 H -0.275 1.275 15 C -0.182 4.182 16 C -0.068 4.068 17 C -0.071 4.071 18 C -0.189 4.189 19 C -0.047 4.047 20 C -0.149 4.149 21 C 0.056 3.944 22 N -0.689 5.689 23 C 0.056 3.944 24 C -0.149 4.149 25 H 0.044 0.956 26 H 0.043 0.957 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.122 0.878 30 H 0.279 0.721 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.339 0.661 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.822 -10.424 -1.869 11.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.245 6.245 3 C -0.029 4.029 4 C -0.199 4.199 5 C -0.140 4.140 6 C 0.083 3.917 7 C -0.494 4.494 8 H 0.095 0.905 9 C -0.141 4.141 10 N -0.428 5.428 11 Si 0.730 3.270 12 H -0.184 1.184 13 H -0.198 1.198 14 H -0.201 1.201 15 C -0.202 4.202 16 C -0.068 4.068 17 C -0.089 4.089 18 C -0.207 4.207 19 C -0.065 4.065 20 C -0.188 4.188 21 C -0.074 4.074 22 N -0.317 5.317 23 C -0.074 4.074 24 C -0.188 4.188 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.100 0.900 28 H 0.116 0.884 29 H 0.140 0.860 30 H 0.090 0.910 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.129 0.871 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.156 0.844 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.855 -11.172 -1.729 12.304 hybrid contribution -0.688 2.122 -0.025 2.230 sum 4.167 -9.051 -1.755 10.117 Atomic orbital electron populations 1.22728 0.80838 1.01746 1.00505 1.85780 1.19224 1.28596 1.90859 1.18678 0.91078 0.82988 1.10205 1.20567 0.97702 0.93078 1.08559 1.21033 0.95309 0.95672 1.02030 1.17517 0.91565 0.92424 0.90184 1.19461 1.01770 0.91821 1.36352 0.90476 1.25852 0.94177 1.01477 0.92586 1.69847 1.17416 1.32736 1.22801 0.86302 0.79843 0.81557 0.79263 1.18439 1.19782 1.20054 1.21014 0.97843 0.90703 1.10625 1.17936 0.89113 0.92906 1.06882 1.21592 0.93448 0.96610 0.97215 1.23035 0.94662 0.97652 1.05369 1.20140 0.95798 0.96550 0.94031 1.22277 0.99016 0.98889 0.98629 1.22036 0.95307 0.97384 0.92644 1.60710 1.20412 1.48445 1.02127 1.22038 0.95293 0.97365 0.92677 1.22273 0.99023 0.98878 0.98603 0.93786 0.93860 0.89981 0.88431 0.86006 0.91031 0.87795 0.87687 0.87111 0.91397 0.91903 0.91272 0.91114 0.90941 0.84367 0.91105 0.90956 0.91325 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 9.80 101.05 0.99 1.58 16 2 O -0.33 -6.71 9.66 -18.47 -0.18 -6.89 16 3 C 0.01 0.32 6.72 -38.37 -0.26 0.07 16 4 C -0.18 -4.21 8.95 -39.91 -0.36 -4.57 16 5 C -0.12 -3.11 8.63 -39.22 -0.34 -3.45 16 6 C 0.09 2.25 5.57 -106.85 -0.60 1.66 16 7 C -0.46 -12.20 9.03 -37.83 -0.34 -12.54 16 8 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 9 C 0.08 1.88 5.13 -17.34 -0.09 1.79 16 10 N -0.80 -20.59 10.97 55.54 0.61 -19.98 16 11 Si 0.91 18.58 29.60 -169.99 -5.03 13.55 16 12 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 13 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 14 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 15 C -0.18 -4.45 9.14 -38.49 -0.35 -4.80 16 16 C -0.07 -1.56 5.88 -104.92 -0.62 -2.17 16 17 C -0.07 -1.37 9.26 -37.60 -0.35 -1.72 16 18 C -0.19 -3.21 8.20 -36.21 -0.30 -3.51 16 19 C -0.05 -0.63 2.55 -91.65 -0.23 -0.86 16 20 C -0.15 -1.79 5.35 -26.64 -0.14 -1.93 16 21 C 0.06 0.58 6.55 -3.83 -0.03 0.55 16 22 N -0.69 -7.10 6.87 -113.81 -0.78 -7.89 16 23 C 0.06 0.57 6.55 -3.83 -0.03 0.55 16 24 C -0.15 -1.76 5.35 -26.65 -0.14 -1.90 16 25 H 0.04 0.67 7.65 -51.93 -0.40 0.28 16 26 H 0.04 0.65 7.65 -51.93 -0.40 0.25 16 27 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.10 2.02 6.25 -52.49 -0.33 1.69 16 29 H 0.12 3.21 6.15 -52.49 -0.32 2.89 16 30 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 31 H 0.10 2.39 6.16 -52.48 -0.32 2.06 16 32 H 0.11 1.96 7.44 -52.49 -0.39 1.57 16 33 H 0.11 1.99 6.04 -52.49 -0.32 1.68 16 34 H 0.07 0.92 7.81 -51.93 -0.41 0.52 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.34 3.21 8.86 -39.29 -0.35 2.86 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 344.54 15.07 5.19 5.19 Total: -1.00 -27.74 344.54 -9.94 -37.68 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -6.58 Total: 9.58 kcal Atomic # 6 Polarization: -28.08 SS G_CDS: -3.17 Total: -31.25 kcal Atomic # 7 Polarization: -27.70 SS G_CDS: -0.17 Total: -27.87 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.18 Total: -6.89 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.74 -9.94 -37.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243894607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.795 kcal (2) G-P(sol) polarization free energy of solvation -27.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds