Wall clock time and date at job start Tue Mar 31 2020 06:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35590 * 116.99764 * 2 1 4 4 C 1.39118 * 119.89368 * 0.02562 * 3 2 1 5 5 C 1.36420 * 120.45798 * 180.02562 * 4 3 2 6 6 C 1.40932 * 120.23474 * 359.97438 * 5 4 3 7 7 C 1.41255 * 120.10933 * 180.02562 * 6 5 4 8 8 H 1.07993 * 120.00163 * 204.68880 * 7 6 5 9 9 C 1.39854 * 119.99800 * 24.69308 * 7 6 5 10 10 N 1.30900 * 120.00159 * 18.00666 * 9 7 6 11 11 Si 1.86802 * 120.00102 * 198.00444 * 9 7 6 12 12 H 1.48499 * 109.46899 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47236 * 120.00234 * 11 9 7 14 14 H 1.48501 * 109.46946 * 240.00132 * 11 9 7 15 15 C 1.40566 * 119.78372 * 0.02562 * 6 5 4 16 16 C 1.38807 * 119.55094 * 0.25048 * 15 6 5 17 17 C 1.47735 * 120.12144 * 179.75068 * 16 15 6 18 18 C 1.32624 * 120.00063 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00123 * 179.97438 * 18 17 16 20 20 C 1.53118 * 109.52100 * 239.87148 * 19 18 17 21 21 C 1.53051 * 109.27020 * 182.50814 * 20 19 18 22 22 N 1.46836 * 109.57871 * 59.08334 * 21 20 19 23 23 C 1.46849 * 111.20052 * 298.28974 * 22 21 20 24 24 C 1.53039 * 109.52339 * 61.74268 * 23 22 21 25 25 H 1.09001 * 109.46955 * 299.99534 * 1 2 3 26 26 H 1.08999 * 109.47424 * 59.99949 * 1 2 3 27 27 H 1.09000 * 109.47100 * 180.02562 * 1 2 3 28 28 H 1.07993 * 119.77074 * 359.97438 * 4 3 2 29 29 H 1.07998 * 119.88569 * 179.97438 * 5 4 3 30 30 H 0.97001 * 119.99924 * 179.97438 * 10 9 7 31 31 H 1.08004 * 120.22177 * 179.97438 * 15 6 5 32 32 H 1.07994 * 120.00417 * 179.97438 * 17 16 15 33 33 H 1.08001 * 120.00005 * 359.97438 * 18 17 16 34 34 H 1.08998 * 109.52015 * 359.97438 * 19 18 17 35 35 H 1.08998 * 109.50607 * 302.37890 * 20 19 18 36 36 H 1.08999 * 109.50414 * 62.50457 * 20 19 18 37 37 H 1.09001 * 109.40644 * 299.06066 * 21 20 19 38 38 H 1.08999 * 109.45211 * 179.12785 * 21 20 19 39 39 H 1.00903 * 111.00297 * 62.38220 * 22 21 20 40 40 H 1.09000 * 109.46356 * 301.72865 * 23 22 21 41 41 H 1.09004 * 109.46408 * 181.75782 * 23 22 21 42 42 H 1.08996 * 109.50273 * 180.88677 * 24 23 22 43 43 H 1.08995 * 109.53475 * 60.77852 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2081 0.0000 4 6 1.2846 2.3734 0.0005 5 6 1.8919 3.5950 0.0000 6 6 3.2981 3.6885 -0.0005 7 6 3.9242 4.9547 -0.0005 8 1 4.9251 5.0622 -0.3915 9 6 3.2478 6.0691 0.5060 10 7 2.2099 5.9058 1.2867 11 14 3.8255 7.7908 0.0684 12 1 5.0101 7.7038 -0.8229 13 1 2.7340 8.5168 -0.6292 14 1 4.1914 8.5204 1.3090 15 6 4.0757 2.5175 -0.0011 16 6 3.4485 1.2792 -0.0064 17 6 4.2534 0.0404 -0.0126 18 6 5.5778 0.1101 -0.0126 19 6 6.3989 -1.1535 -0.0183 20 6 7.2854 -1.1933 1.2295 21 6 8.1618 -2.4473 1.1866 22 7 8.9904 -2.4273 -0.0254 23 6 8.1600 -2.4374 -1.2366 24 6 7.2848 -1.1823 -1.2670 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2065 2.3106 0.0005 29 1 1.2930 4.4937 0.0000 30 1 1.7410 6.6787 1.6383 31 1 5.1539 2.5808 -0.0019 32 1 3.7635 -0.9220 -0.0163 33 1 6.0679 1.0726 -0.0085 34 1 5.7359 -2.0186 -0.0215 35 1 7.9202 -0.3075 1.2534 36 1 6.6584 -1.2166 2.1208 37 1 7.5266 -3.3330 1.1779 38 1 8.8053 -2.4706 2.0661 39 1 9.6162 -1.6358 -0.0228 40 1 7.5248 -3.3231 -1.2341 41 1 8.8023 -2.4537 -2.1172 42 1 6.6572 -1.1979 -2.1580 43 1 7.9190 -0.2960 -1.2838 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243894607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:15 Heat of formation + Delta-G solvation = -36.962291 kcal Electronic energy + Delta-G solvation = -22089.068834 eV Core-core repulsion = 18904.766119 eV Total energy + Delta-G solvation = -3184.302714 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 287.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.62124 -39.84294 -38.17916 -36.10624 -34.85471 -32.57459 -31.72924 -31.32390 -29.43996 -28.20536 -26.49932 -24.92346 -23.73654 -23.09270 -22.36283 -21.17542 -20.24292 -18.91123 -18.56773 -17.36518 -16.88343 -16.47548 -16.34896 -15.71048 -15.55746 -15.37727 -15.06525 -14.92295 -14.59545 -14.33337 -14.19280 -13.78897 -13.51279 -13.21295 -13.13823 -12.90220 -12.83992 -12.64888 -12.53440 -12.32295 -12.14041 -11.97615 -11.74390 -11.58884 -11.52487 -11.48849 -11.23396 -10.97463 -10.60102 -9.29064 -9.25436 -8.63375 -8.53755 -6.25508 0.41599 0.91853 1.37507 1.43587 1.52601 1.90596 2.21197 2.74393 2.76595 3.42223 3.67797 3.69846 3.95572 4.04909 4.15316 4.24691 4.29232 4.34976 4.45084 4.47045 4.48760 4.56845 4.64243 4.72002 4.79587 4.82688 4.90193 4.96782 5.00767 5.08069 5.09459 5.13106 5.25314 5.29179 5.37842 5.39921 5.63211 5.78368 5.83604 6.01415 6.04084 6.10710 6.29364 6.50893 6.52689 6.76105 6.93167 7.05640 8.35173 Molecular weight = 287.16amu Principal moments of inertia in cm(-1) A = 0.013817 B = 0.004123 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.045706 B = 6788.846775 C = 8405.824090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.336 6.336 3 C 0.012 3.988 4 C -0.181 4.181 5 C -0.148 4.148 6 C 0.056 3.944 7 C -0.500 4.500 8 H 0.074 0.926 9 C 0.036 3.964 10 N -0.833 5.833 11 Si 0.980 3.020 12 H -0.259 1.259 13 H -0.264 1.264 14 H -0.266 1.266 15 C -0.198 4.198 16 C -0.074 4.074 17 C -0.100 4.100 18 C -0.155 4.155 19 C -0.046 4.046 20 C -0.145 4.145 21 C 0.062 3.938 22 N -0.690 5.690 23 C 0.062 3.938 24 C -0.144 4.144 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.108 0.892 30 H 0.287 0.713 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.345 0.655 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.666 -11.752 -2.104 13.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.252 6.252 3 C -0.032 4.032 4 C -0.200 4.200 5 C -0.168 4.168 6 C 0.054 3.946 7 C -0.530 4.530 8 H 0.092 0.908 9 C -0.178 4.178 10 N -0.460 5.460 11 Si 0.801 3.199 12 H -0.183 1.183 13 H -0.189 1.189 14 H -0.191 1.191 15 C -0.217 4.217 16 C -0.074 4.074 17 C -0.118 4.118 18 C -0.173 4.173 19 C -0.065 4.065 20 C -0.184 4.184 21 C -0.068 4.068 22 N -0.319 5.319 23 C -0.068 4.068 24 C -0.184 4.184 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.125 0.875 30 H 0.097 0.903 31 H 0.126 0.874 32 H 0.133 0.867 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.163 0.837 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.693 -12.524 -1.963 13.896 hybrid contribution -0.950 2.352 0.061 2.538 sum 4.743 -10.171 -1.902 11.383 Atomic orbital electron populations 1.23090 0.78232 1.04520 1.00893 1.85770 1.21852 1.27001 1.90554 1.18813 0.91395 0.83814 1.09153 1.20787 0.99028 0.92543 1.07658 1.20971 0.95190 0.96110 1.04492 1.17855 0.92316 0.93330 0.91084 1.19687 1.02231 0.92981 1.38125 0.90831 1.26682 0.94093 1.05206 0.91792 1.69900 1.18444 1.34267 1.23381 0.85193 0.79403 0.76182 0.79133 1.18266 1.18901 1.19133 1.21140 0.98097 0.91060 1.11442 1.18332 0.90007 0.93784 1.05308 1.21514 0.93969 0.95520 1.00839 1.23308 0.94253 0.98881 1.00900 1.20204 0.95966 0.94495 0.95831 1.22247 0.98860 0.99968 0.97374 1.22013 0.95211 0.96240 0.93303 1.60726 1.20325 1.48757 1.02042 1.22023 0.95214 0.96260 0.93300 1.22239 0.98855 0.99937 0.97323 0.93578 0.93208 0.86110 0.86128 0.87457 0.90267 0.87421 0.86683 0.88344 0.90996 0.92191 0.91888 0.90881 0.89566 0.83705 0.90876 0.89485 0.91720 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.80 113.37 1.11 1.92 16 2 O -0.34 -13.33 9.66 -89.00 -0.86 -14.19 16 3 C 0.01 0.57 6.72 23.05 0.15 0.73 16 4 C -0.18 -8.63 8.95 22.06 0.20 -8.43 16 5 C -0.15 -7.94 8.63 22.51 0.19 -7.75 16 6 C 0.06 3.10 5.57 -21.31 -0.12 2.98 16 7 C -0.50 -27.42 9.03 23.40 0.21 -27.21 16 8 H 0.07 3.91 7.91 -2.91 -0.02 3.88 16 9 C 0.04 1.83 5.13 85.22 0.44 2.27 16 10 N -0.83 -44.05 10.97 21.81 0.24 -43.81 16 11 Si 0.98 38.66 29.60 68.60 2.03 40.69 16 12 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 13 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 14 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 15 C -0.20 -10.04 9.14 22.97 0.21 -9.83 16 16 C -0.07 -3.45 5.88 -20.06 -0.12 -3.57 16 17 C -0.10 -3.88 9.26 23.62 0.22 -3.67 16 18 C -0.16 -5.20 8.20 24.52 0.20 -5.00 16 19 C -0.05 -1.17 2.55 -11.46 -0.03 -1.20 16 20 C -0.15 -3.23 5.35 30.65 0.16 -3.07 16 21 C 0.06 1.12 6.55 86.33 0.57 1.69 16 22 N -0.69 -12.34 6.87 -513.99 -3.53 -15.87 16 23 C 0.06 1.10 6.55 86.33 0.57 1.66 16 24 C -0.14 -3.15 5.35 30.65 0.16 -2.98 16 25 H 0.05 1.33 7.65 -2.39 -0.02 1.32 16 26 H 0.05 1.40 7.65 -2.39 -0.02 1.38 16 27 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.12 4.99 6.25 -2.91 -0.02 4.97 16 29 H 0.11 5.95 6.15 -2.91 -0.02 5.93 16 30 H 0.29 13.66 8.30 -92.71 -0.77 12.89 16 31 H 0.11 5.17 6.16 -2.91 -0.02 5.15 16 32 H 0.12 4.19 7.44 -2.91 -0.02 4.17 16 33 H 0.10 3.56 6.04 -2.91 -0.02 3.55 16 34 H 0.07 1.81 7.81 -2.39 -0.02 1.79 16 35 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.35 5.61 8.86 -89.69 -0.79 4.82 16 40 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 42 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -61.54 344.54 2.22 -59.32 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: 0.21 Total: 35.31 kcal Atomic # 6 Polarization: -65.58 SS G_CDS: 4.13 Total: -61.45 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -3.29 Total: -59.68 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.86 Total: -14.19 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Total: -61.54 2.22 -59.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243894607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.360 kcal (2) G-P(sol) polarization free energy of solvation -61.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds