Wall clock time and date at job start Tue Mar 31 2020 05:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86802 * 120.00303 * 2 1 4 4 H 1.48503 * 109.47054 * 270.00783 * 3 2 1 5 5 H 1.48502 * 109.46903 * 30.00370 * 3 2 1 6 6 H 1.48499 * 109.47419 * 150.00564 * 3 2 1 7 7 C 1.37878 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99828 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00403 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47614 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47389 * 180.02562 * 10 9 7 12 12 C 1.76200 * 102.99990 * 180.02562 * 11 10 9 13 13 N 1.31082 * 125.99574 * 359.97198 * 12 11 10 14 14 N 1.40070 * 108.03277 * 179.97438 * 13 12 11 15 15 C 1.31380 * 108.01936 * 359.97438 * 14 13 12 16 16 N 1.38426 * 143.43235 * 179.97438 * 15 14 13 17 17 H 0.96997 * 125.96680 * 0.02562 * 16 15 14 18 18 C 1.39135 * 108.07532 * 180.02562 * 16 15 14 19 19 C 1.38874 * 132.70574 * 179.70668 * 18 16 15 20 20 C 1.38038 * 119.88937 * 179.89000 * 19 18 16 21 21 C 1.38436 * 120.25712 * 0.41179 * 20 19 18 22 22 C 1.38079 * 120.27329 * 359.81485 * 21 20 19 23 23 C 1.38749 * 119.91846 * 359.97438 * 22 21 20 24 24 N 1.36649 * 107.94052 * 0.02562 * 15 14 13 25 25 H 0.97002 * 120.00067 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47039 * 59.99380 * 9 7 2 27 27 H 1.08995 * 109.46919 * 299.99891 * 9 7 2 28 28 H 1.09001 * 109.46584 * 59.99602 * 10 9 7 29 29 H 1.09003 * 109.46625 * 300.00100 * 10 9 7 30 30 H 1.07998 * 120.05333 * 0.02562 * 19 18 16 31 31 H 1.08004 * 119.86686 * 180.19928 * 20 19 18 32 32 H 1.08004 * 119.86551 * 179.78839 * 21 20 19 33 33 H 1.07994 * 120.04448 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 16 5.8355 -2.6366 -0.0009 12 6 6.2318 -4.3534 -0.0016 13 7 5.3718 -5.3426 -0.0014 14 7 6.0924 -6.5437 -0.0027 15 6 7.3728 -6.2495 -0.0041 16 7 8.6411 -6.8042 -0.0053 17 1 8.8484 -7.7517 -0.0058 18 6 9.5667 -5.7653 -0.0059 19 6 10.9552 -5.7409 -0.0018 20 6 11.6219 -4.5323 -0.0059 21 6 10.9119 -3.3439 -0.0054 22 6 9.5311 -3.3580 -0.0047 23 6 8.8514 -4.5676 -0.0050 24 7 7.4919 -4.8882 -0.0032 25 1 -0.4850 0.8401 0.0004 26 1 3.8751 -0.6804 0.8888 27 1 3.8744 -0.6801 -0.8911 28 1 3.6577 -3.1506 -0.8907 29 1 3.6585 -3.1502 0.8893 30 1 11.5124 -6.6661 0.0022 31 1 12.7018 -4.5137 -0.0061 32 1 11.4400 -2.4018 -0.0052 33 1 8.9809 -2.4287 -0.0047 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004267224.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:13 Heat of formation + Delta-G solvation = 144.211500 kcal Electronic energy + Delta-G solvation = -18968.237065 eV Core-core repulsion = 15929.744158 eV Total energy + Delta-G solvation = -3038.492907 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.40497 -39.74333 -36.76623 -33.96582 -33.73705 -31.34797 -31.03024 -29.93082 -29.13142 -25.64727 -24.52707 -22.97474 -22.27297 -21.69974 -20.64951 -18.65366 -18.02603 -17.07976 -17.00414 -16.83840 -16.00157 -15.13310 -14.83449 -14.49908 -14.43119 -14.18008 -13.62815 -13.46810 -12.81013 -12.68815 -12.45042 -11.94597 -11.81995 -11.36075 -11.30478 -11.25229 -11.17212 -10.46877 -10.40139 -10.22127 -9.99343 -9.74451 -9.31275 -8.95078 -8.63166 -8.50507 -7.40840 -6.12453 -4.13595 0.56655 0.81039 1.05641 1.73146 1.96563 2.36003 2.47397 2.61160 3.23342 3.26681 3.34459 3.36509 3.80586 4.37486 4.40160 4.49922 4.60306 4.70967 4.77903 4.94396 5.20121 5.32485 5.33710 5.52541 5.82110 5.86038 5.91483 5.96374 6.01188 6.19571 6.43823 6.73586 6.84178 6.97442 7.09303 7.59080 7.89897 8.40494 8.90767 9.46315 11.00142 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.027608 B = 0.003673 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.947009 B = 7620.511527 C = 8614.011539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.877 3.123 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.520 4.520 8 H 0.078 0.922 9 C 0.003 3.997 10 C -0.065 4.065 11 S -0.037 6.037 12 C 0.226 3.774 13 N -0.279 5.279 14 N -0.324 5.324 15 C 0.427 3.573 16 N -0.600 5.600 17 H 0.442 0.558 18 C 0.139 3.861 19 C -0.123 4.123 20 C -0.086 4.086 21 C -0.122 4.122 22 C -0.073 4.073 23 C 0.072 3.928 24 N -0.449 5.449 25 H 0.266 0.734 26 H 0.029 0.971 27 H 0.024 0.976 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.326 -9.178 0.009 28.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.704 3.296 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.560 4.560 8 H 0.096 0.904 9 C -0.037 4.037 10 C -0.213 4.213 11 S 0.192 5.808 12 C -0.153 4.153 13 N -0.111 5.111 14 N -0.165 5.165 15 C 0.064 3.936 16 N -0.229 5.229 17 H 0.285 0.715 18 C 0.035 3.965 19 C -0.145 4.145 20 C -0.105 4.105 21 C -0.142 4.142 22 C -0.094 4.094 23 C -0.028 4.028 24 N -0.146 5.146 25 H 0.076 0.924 26 H 0.047 0.953 27 H 0.043 0.957 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.155 0.845 31 H 0.157 0.843 32 H 0.157 0.843 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 26.216 -9.016 0.014 27.723 hybrid contribution 0.688 -0.109 -0.022 0.697 sum 26.904 -9.125 -0.008 28.409 Atomic orbital electron populations 1.69885 1.06257 1.27173 1.50053 1.24946 0.94745 0.99065 0.94228 0.86812 0.80445 0.83581 0.78755 1.20003 1.21089 1.18836 1.20877 0.87852 0.95081 1.52196 0.90358 1.19431 0.97823 0.88679 0.97734 1.23916 0.85577 1.05122 1.06703 1.85496 1.14565 0.88915 1.91829 1.26285 0.80568 1.02740 1.05708 1.78482 1.19478 0.92121 1.20982 1.78371 0.94153 1.14982 1.28963 1.22093 0.89600 0.80366 1.01496 1.40799 0.98892 1.08484 1.74706 0.71537 1.18070 0.91350 0.84187 1.02855 1.20097 0.88647 0.99845 1.05909 1.20984 1.00347 0.91066 0.98144 1.20954 0.92362 0.99093 1.01808 1.20436 0.94421 0.95355 0.99139 1.17958 0.79827 0.95394 1.09646 1.44529 1.04404 1.07391 1.58255 0.92415 0.95307 0.95743 0.88920 0.88901 0.84485 0.84343 0.84282 0.84297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.96 55.43 0.77 -26.39 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 21.03 27.47 -169.99 -4.67 16.36 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 7 C -0.52 -14.52 9.66 -34.44 -0.33 -14.85 16 8 H 0.08 2.36 7.99 -52.49 -0.42 1.94 16 9 C 0.00 0.08 4.05 -27.88 -0.11 -0.04 16 10 C -0.06 -1.33 5.52 37.16 0.20 -1.12 16 11 S -0.04 -0.65 22.16 -107.50 -2.38 -3.03 16 12 C 0.23 4.10 8.42 -88.19 -0.74 3.36 16 13 N -0.28 -5.60 12.28 30.71 0.38 -5.23 16 14 N -0.32 -6.00 12.73 30.35 0.39 -5.61 16 15 C 0.43 6.54 9.66 -318.62 -3.08 3.46 16 16 N -0.60 -6.15 6.32 -10.97 -0.07 -6.22 16 17 H 0.44 2.85 8.96 -40.82 -0.37 2.48 16 18 C 0.14 1.36 7.22 -83.84 -0.61 0.76 16 19 C -0.12 -0.77 10.07 -39.42 -0.40 -1.17 16 20 C -0.09 -0.47 10.03 -39.58 -0.40 -0.86 16 21 C -0.12 -0.82 10.03 -39.57 -0.40 -1.22 16 22 C -0.07 -0.72 10.07 -39.45 -0.40 -1.12 16 23 C 0.07 0.89 7.22 -83.62 -0.60 0.29 16 24 N -0.45 -7.10 3.48 -61.32 -0.21 -7.32 16 25 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 27 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 28 H 0.09 1.92 8.14 -51.92 -0.42 1.50 16 29 H 0.09 1.93 8.14 -51.92 -0.42 1.51 16 30 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 31 H 0.14 0.34 8.06 -52.48 -0.42 -0.08 16 32 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 33 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 305.13 15.07 4.60 4.60 Total: -1.00 -33.92 305.13 -11.41 -45.33 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: -3.26 Total: -1.95 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -6.96 Total: -10.53 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 1.25 Total: -50.76 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Atomic # 16 Polarization: -0.65 SS G_CDS: -2.38 Total: -3.03 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.92 -11.41 -45.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004267224.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.541 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds