Wall clock time and date at job start Tue Mar 31 2020 05:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86802 * 120.00303 * 2 1 4 4 H 1.48503 * 109.47054 * 270.00783 * 3 2 1 5 5 H 1.48502 * 109.46903 * 30.00370 * 3 2 1 6 6 H 1.48499 * 109.47419 * 150.00564 * 3 2 1 7 7 C 1.37878 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99828 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00403 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47614 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47389 * 180.02562 * 10 9 7 12 12 C 1.76200 * 102.99990 * 180.02562 * 11 10 9 13 13 N 1.31082 * 125.99574 * 359.97198 * 12 11 10 14 14 N 1.40070 * 108.03277 * 179.97438 * 13 12 11 15 15 C 1.31380 * 108.01936 * 359.97438 * 14 13 12 16 16 N 1.38426 * 143.43235 * 179.97438 * 15 14 13 17 17 H 0.96997 * 125.96680 * 0.02562 * 16 15 14 18 18 C 1.39135 * 108.07532 * 180.02562 * 16 15 14 19 19 C 1.38874 * 132.70574 * 179.70668 * 18 16 15 20 20 C 1.38038 * 119.88937 * 179.89000 * 19 18 16 21 21 C 1.38436 * 120.25712 * 0.41179 * 20 19 18 22 22 C 1.38079 * 120.27329 * 359.81485 * 21 20 19 23 23 C 1.38749 * 119.91846 * 359.97438 * 22 21 20 24 24 N 1.36649 * 107.94052 * 0.02562 * 15 14 13 25 25 H 0.97002 * 120.00067 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47039 * 59.99380 * 9 7 2 27 27 H 1.08995 * 109.46919 * 299.99891 * 9 7 2 28 28 H 1.09001 * 109.46584 * 59.99602 * 10 9 7 29 29 H 1.09003 * 109.46625 * 300.00100 * 10 9 7 30 30 H 1.07998 * 120.05333 * 0.02562 * 19 18 16 31 31 H 1.08004 * 119.86686 * 180.19928 * 20 19 18 32 32 H 1.08004 * 119.86551 * 179.78839 * 21 20 19 33 33 H 1.07994 * 120.04448 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5114 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 16 5.8355 -2.6366 -0.0009 12 6 6.2318 -4.3534 -0.0016 13 7 5.3718 -5.3426 -0.0014 14 7 6.0924 -6.5437 -0.0027 15 6 7.3728 -6.2495 -0.0041 16 7 8.6411 -6.8042 -0.0053 17 1 8.8484 -7.7517 -0.0058 18 6 9.5667 -5.7653 -0.0059 19 6 10.9552 -5.7409 -0.0018 20 6 11.6219 -4.5323 -0.0059 21 6 10.9119 -3.3439 -0.0054 22 6 9.5311 -3.3580 -0.0047 23 6 8.8514 -4.5676 -0.0050 24 7 7.4919 -4.8882 -0.0032 25 1 -0.4850 0.8401 0.0004 26 1 3.8751 -0.6804 0.8888 27 1 3.8744 -0.6801 -0.8911 28 1 3.6577 -3.1506 -0.8907 29 1 3.6585 -3.1502 0.8893 30 1 11.5124 -6.6661 0.0022 31 1 12.7018 -4.5137 -0.0061 32 1 11.4400 -2.4018 -0.0052 33 1 8.9809 -2.4287 -0.0047 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004267224.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:13 Heat of formation + Delta-G solvation = 125.484190 kcal Electronic energy + Delta-G solvation = -18969.049142 eV Core-core repulsion = 15929.744158 eV Total energy + Delta-G solvation = -3039.304984 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.45714 -40.63697 -37.55558 -35.83534 -34.88175 -33.37042 -31.97198 -30.87570 -29.96739 -27.64354 -25.50275 -23.73936 -23.54602 -22.87853 -22.18319 -19.61857 -19.15614 -18.75717 -18.05830 -17.95582 -17.19762 -16.44271 -15.85607 -15.84774 -15.45362 -15.18030 -14.98443 -14.80186 -14.64379 -13.79388 -13.38632 -13.28717 -13.10001 -12.74788 -12.59583 -12.28027 -12.22450 -12.16019 -12.13090 -11.90728 -11.68977 -11.28380 -11.13827 -10.79827 -9.69592 -9.46075 -8.66051 -8.31465 -6.39281 -0.31102 -0.19822 0.16033 0.70527 0.83561 1.03461 1.15795 1.39023 1.40969 1.52565 1.54880 2.35830 2.62751 2.94979 3.03124 3.53732 3.66049 3.73946 4.07652 4.07868 4.14525 4.26712 4.33577 4.34795 4.64398 4.66248 4.89939 5.11533 5.15092 5.22662 5.32103 5.43201 5.50971 5.55832 5.89750 6.02777 6.19825 6.67142 6.70205 7.24758 8.85016 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.027608 B = 0.003673 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.947009 B = 7620.511527 C = 8614.011539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.010 3.990 3 Si 0.951 3.049 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.240 1.240 7 C -0.535 4.535 8 H 0.034 0.966 9 C 0.010 3.990 10 C -0.068 4.068 11 S 0.015 5.985 12 C 0.206 3.794 13 N -0.320 5.320 14 N -0.366 5.366 15 C 0.427 3.573 16 N -0.578 5.578 17 H 0.458 0.542 18 C 0.129 3.871 19 C -0.108 4.108 20 C -0.069 4.069 21 C -0.110 4.110 22 C -0.092 4.092 23 C 0.022 3.978 24 N -0.450 5.450 25 H 0.270 0.730 26 H 0.039 0.961 27 H 0.038 0.962 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.176 0.824 31 H 0.183 0.817 32 H 0.169 0.831 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.994 -8.302 0.002 34.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.188 4.188 3 Si 0.773 3.227 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.163 1.163 7 C -0.575 4.575 8 H 0.052 0.948 9 C -0.029 4.029 10 C -0.217 4.217 11 S 0.244 5.756 12 C -0.173 4.173 13 N -0.153 5.153 14 N -0.209 5.209 15 C 0.065 3.935 16 N -0.210 5.210 17 H 0.305 0.695 18 C 0.026 3.974 19 C -0.130 4.130 20 C -0.088 4.088 21 C -0.130 4.130 22 C -0.112 4.112 23 C -0.076 4.076 24 N -0.146 5.146 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.193 0.807 31 H 0.200 0.800 32 H 0.187 0.813 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 31.965 -8.170 0.007 32.993 hybrid contribution -0.807 -0.503 -0.021 0.951 sum 31.158 -8.674 -0.014 32.343 Atomic orbital electron populations 1.70049 1.08432 1.28535 1.51638 1.25983 0.95641 1.03582 0.93558 0.85657 0.79717 0.77768 0.79608 1.18694 1.20716 1.16335 1.21176 0.90674 0.93651 1.51959 0.94780 1.19253 0.94710 0.90452 0.98509 1.23553 0.89249 1.03327 1.05589 1.84991 1.10033 0.88504 1.92107 1.26244 0.81846 1.02652 1.06607 1.78340 1.21401 0.93240 1.22283 1.78187 0.95918 1.14690 1.32075 1.22304 0.90280 0.80871 1.00095 1.40862 0.96958 1.09599 1.73594 0.69550 1.18475 0.92412 0.82755 1.03742 1.20659 0.86847 1.02061 1.03384 1.21577 1.02402 0.89852 0.94962 1.21402 0.90899 1.01258 0.99431 1.20630 0.95937 0.94268 1.00395 1.18549 0.78283 0.97651 1.13108 1.44570 1.05076 1.07426 1.57560 0.92142 0.94289 0.94417 0.90183 0.90197 0.80697 0.79989 0.81340 0.85149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.51 13.96 21.45 0.30 -59.21 16 2 C 0.01 0.60 5.47 84.66 0.46 1.06 16 3 Si 0.95 43.07 27.47 68.60 1.88 44.96 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.24 -9.90 6.54 99.48 0.65 -9.25 16 7 C -0.53 -31.10 9.66 25.60 0.25 -30.85 16 8 H 0.03 2.20 7.99 -2.91 -0.02 2.18 16 9 C 0.01 0.49 4.05 29.85 0.12 0.61 16 10 C -0.07 -2.90 5.52 71.98 0.40 -2.50 16 11 S 0.01 0.52 22.16 -56.49 -1.25 -0.73 16 12 C 0.21 7.77 8.42 179.50 1.51 9.28 16 13 N -0.32 -13.64 12.28 -56.75 -0.70 -14.34 16 14 N -0.37 -14.26 12.73 -57.89 -0.74 -14.99 16 15 C 0.43 13.30 9.66 260.02 2.51 15.81 16 16 N -0.58 -11.03 6.32 -188.63 -1.19 -12.22 16 17 H 0.46 5.02 8.96 -92.71 -0.83 4.19 16 18 C 0.13 2.18 7.22 38.44 0.28 2.46 16 19 C -0.11 -0.80 10.07 22.37 0.23 -0.57 16 20 C -0.07 -0.33 10.03 22.27 0.22 -0.11 16 21 C -0.11 -0.98 10.03 22.28 0.22 -0.75 16 22 C -0.09 -1.62 10.07 22.35 0.23 -1.40 16 23 C 0.02 0.53 7.22 38.32 0.28 0.80 16 24 N -0.45 -14.40 3.48 -347.91 -1.21 -15.61 16 25 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 26 H 0.04 1.75 7.20 -2.39 -0.02 1.73 16 27 H 0.04 1.67 7.57 -2.39 -0.02 1.65 16 28 H 0.08 3.55 8.14 -2.39 -0.02 3.53 16 29 H 0.08 3.55 8.14 -2.39 -0.02 3.53 16 30 H 0.18 0.02 8.06 -2.91 -0.02 -0.01 16 31 H 0.18 -0.57 8.06 -2.91 -0.02 -0.59 16 32 H 0.17 0.50 8.06 -2.91 -0.02 0.48 16 33 H 0.13 2.43 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -80.07 305.13 4.07 -76.00 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: 0.27 Total: 2.31 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: 6.70 Total: -6.16 kcal Atomic # 7 Polarization: -112.83 SS G_CDS: -3.54 Total: -116.37 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.88 Total: 44.96 kcal Atomic # 16 Polarization: 0.52 SS G_CDS: -1.25 Total: -0.73 kcal Total: -80.07 4.07 -76.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004267224.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.483 kcal (2) G-P(sol) polarization free energy of solvation -80.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds