Wall clock time and date at job start Tue Mar 31 2020 05:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.71017 * 125.53565 * 2 1 4 4 C 1.75962 * 90.64646 * 180.09621 * 3 2 1 5 5 N 1.37416 * 125.19975 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99662 * 359.69384 * 5 4 3 7 7 O 1.21963 * 120.00498 * 359.97438 * 6 5 4 8 8 C 1.40445 * 119.99754 * 179.72865 * 6 5 4 9 9 H 1.08002 * 119.99693 * 0.26780 * 8 6 5 10 10 C 1.40061 * 120.00101 * 180.27583 * 8 6 5 11 11 N 1.30684 * 119.99826 * 359.97438 * 10 8 6 12 12 Si 1.86795 * 120.00061 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46983 * 89.99647 * 12 10 8 14 14 H 1.48499 * 109.47218 * 209.99716 * 12 10 8 15 15 H 1.48500 * 109.47317 * 330.00078 * 12 10 8 16 16 N 1.30355 * 109.60374 * 359.69874 * 4 3 2 17 17 C 1.31859 * 116.00166 * 0.22948 * 16 4 3 18 18 C 1.47957 * 122.59546 * 180.02562 * 17 16 4 19 19 C 1.39665 * 120.15130 * 144.69854 * 18 17 16 20 20 C 1.37904 * 119.84960 * 179.76690 * 19 18 17 21 21 C 1.38427 * 120.15076 * 0.51425 * 20 19 18 22 22 C 1.38431 * 120.29590 * 359.73962 * 21 20 19 23 23 C 1.37908 * 120.15061 * 0.02562 * 22 21 20 24 24 H 1.08999 * 109.47212 * 270.22978 * 1 2 3 25 25 H 1.09004 * 109.46627 * 30.23202 * 1 2 3 26 26 H 1.08997 * 109.47216 * 150.22440 * 1 2 3 27 27 H 0.97000 * 120.00445 * 179.69041 * 5 4 3 28 28 H 0.96999 * 119.99856 * 180.02562 * 11 10 8 29 29 H 1.08003 * 120.07457 * 0.02562 * 19 18 17 30 30 H 1.08007 * 119.92981 * 180.27309 * 20 19 18 31 31 H 1.07996 * 119.85767 * 179.72083 * 21 20 19 32 32 H 1.08001 * 119.92496 * 180.02562 * 22 21 20 33 33 H 1.08000 * 120.07278 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5010 1.3917 0.0000 4 6 3.9443 0.3852 -0.0030 5 7 5.2363 0.8532 -0.0048 6 6 5.4723 2.1801 -0.0106 7 8 4.5393 2.9655 -0.0147 8 6 6.7928 2.6584 -0.0067 9 1 7.6190 1.9629 -0.0034 10 6 7.0381 4.0374 -0.0069 11 7 6.0383 4.8789 -0.0112 12 14 8.7944 4.6736 -0.0009 13 1 9.2649 4.8410 -1.3995 14 1 8.8443 5.9828 0.6982 15 1 9.6702 3.7028 0.7031 16 7 3.6007 -0.8723 0.0027 17 6 2.3051 -1.1175 0.0045 18 6 1.7537 -2.4904 0.0114 19 6 0.5780 -2.7708 0.7111 20 6 0.0670 -4.0516 0.7094 21 6 0.7224 -5.0607 0.0249 22 6 1.8910 -4.7909 -0.6663 23 6 2.4103 -3.5134 -0.6768 24 1 -0.3633 0.0041 1.0276 25 1 -0.3633 0.8880 -0.5175 26 1 -0.3633 -0.8920 -0.5103 27 1 5.9785 0.2286 -0.0018 28 1 6.2082 5.8339 -0.0117 29 1 0.0679 -1.9853 1.2489 30 1 -0.8446 -4.2689 1.2464 31 1 0.3204 -6.0631 0.0304 32 1 2.3972 -5.5826 -1.1986 33 1 3.3219 -3.3042 -1.2169 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005533251.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:45 Heat of formation + Delta-G solvation = 21.759586 kcal Electronic energy + Delta-G solvation = -19197.996166 eV Core-core repulsion = 16121.900594 eV Total energy + Delta-G solvation = -3076.095572 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.63663 -38.55550 -37.54194 -33.99988 -32.77571 -31.89575 -30.84726 -30.19715 -27.54303 -25.60777 -23.47110 -22.44734 -22.10149 -20.46817 -19.34910 -17.82856 -16.61884 -16.36973 -15.94898 -15.50315 -15.15109 -14.78748 -14.26518 -14.16681 -13.47977 -13.40664 -13.14304 -12.93607 -12.61396 -12.40029 -12.16486 -11.95265 -11.58984 -11.38089 -11.24968 -10.94612 -10.90754 -10.54014 -10.21308 -9.79952 -9.15782 -9.01206 -8.83203 -8.80809 -8.23868 -8.07653 -6.92864 -6.64009 -5.19215 1.11170 1.53366 1.79679 2.01126 2.81903 2.93577 3.02211 3.05956 3.37500 3.76788 4.00203 4.16005 4.24537 4.96902 5.02537 5.04582 5.25199 5.42011 5.51544 5.54897 5.58389 5.68450 5.81200 5.93742 6.12426 6.15692 6.27824 6.43787 6.59488 6.75701 6.78968 7.00650 7.10453 7.48445 7.55576 7.74238 8.41888 8.53861 8.94738 10.01735 10.23950 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.035824 B = 0.003741 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.417354 B = 7482.999701 C = 8164.886621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.351 4.351 3 S 0.262 5.738 4 C 0.293 3.707 5 N -0.635 5.635 6 C 0.529 3.471 7 O -0.551 6.551 8 C -0.520 4.520 9 H 0.077 0.923 10 C 0.086 3.914 11 N -0.734 5.734 12 Si 0.920 3.080 13 H -0.267 1.267 14 H -0.275 1.275 15 H -0.261 1.261 16 N -0.535 5.535 17 C 0.112 3.888 18 C 0.004 3.996 19 C -0.110 4.110 20 C -0.124 4.124 21 C -0.128 4.128 22 C -0.125 4.125 23 C -0.093 4.093 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.406 0.594 28 H 0.278 0.722 29 H 0.127 0.873 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.592 -11.254 0.011 13.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.475 4.475 3 S 0.515 5.485 4 C -0.075 4.075 5 N -0.283 5.283 6 C 0.341 3.659 7 O -0.436 6.436 8 C -0.555 4.555 9 H 0.096 0.904 10 C -0.139 4.139 11 N -0.361 5.361 12 Si 0.744 3.256 13 H -0.192 1.192 14 H -0.200 1.200 15 H -0.184 1.184 16 N -0.259 5.259 17 C -0.024 4.024 18 C 0.001 3.999 19 C -0.129 4.129 20 C -0.142 4.142 21 C -0.146 4.146 22 C -0.143 4.143 23 C -0.112 4.112 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.242 0.758 28 H 0.089 0.911 29 H 0.145 0.855 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.913 -9.651 0.014 12.480 hybrid contribution 1.070 -1.028 0.002 1.484 sum -6.842 -10.679 0.016 12.683 Atomic orbital electron populations 1.20069 0.88208 1.02128 1.01310 1.26313 1.02254 1.00373 1.18596 1.85102 0.92760 1.02662 1.67962 1.24312 0.93457 0.90692 0.99024 1.43512 1.01911 1.10422 1.72454 1.17005 0.91888 0.77597 0.79456 1.90629 1.44572 1.51986 1.56389 1.19703 0.91555 0.92827 1.51416 0.90430 1.25801 0.99310 0.96501 0.92318 1.70006 1.32484 1.03525 1.30081 0.86138 0.81405 0.78764 0.79319 1.19244 1.19989 1.18439 1.66739 1.16315 1.16170 1.26653 1.18475 0.86939 0.92359 1.04616 1.18234 0.94206 0.90471 0.96977 1.21361 0.95668 0.96896 0.98963 1.21001 1.00101 0.92926 1.00204 1.21169 0.96063 0.98930 0.98463 1.21067 0.96537 0.96577 1.00079 1.21319 0.99416 0.92052 0.98445 0.91887 0.92105 0.91395 0.75760 0.91088 0.85543 0.86187 0.86478 0.86233 0.85639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.82 8.58 36.01 0.31 -0.51 16 2 C -0.35 -6.43 6.39 -34.64 -0.22 -6.65 16 3 S 0.26 5.55 20.19 -107.50 -2.17 3.38 16 4 C 0.29 6.57 8.32 -88.28 -0.73 5.84 16 5 N -0.63 -14.47 5.33 -14.99 -0.08 -14.55 16 6 C 0.53 13.92 7.48 -15.43 -0.12 13.81 16 7 O -0.55 -15.88 12.29 4.95 0.06 -15.82 16 8 C -0.52 -13.28 9.24 -38.07 -0.35 -13.63 16 9 H 0.08 1.79 7.85 -52.49 -0.41 1.38 16 10 C 0.09 2.15 5.49 -17.36 -0.10 2.05 16 11 N -0.73 -19.72 11.70 55.55 0.65 -19.07 16 12 Si 0.92 18.13 29.56 -169.99 -5.02 13.11 16 13 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 14 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 15 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 16 N -0.53 -11.31 10.48 -10.29 -0.11 -11.42 16 17 C 0.11 2.15 6.40 -84.21 -0.54 1.61 16 18 C 0.00 0.06 5.60 -104.84 -0.59 -0.53 16 19 C -0.11 -1.52 8.08 -39.17 -0.32 -1.83 16 20 C -0.12 -1.44 10.03 -39.63 -0.40 -1.84 16 21 C -0.13 -1.43 10.05 -39.44 -0.40 -1.83 16 22 C -0.12 -1.54 10.03 -39.63 -0.40 -1.93 16 23 C -0.09 -1.41 9.66 -39.16 -0.38 -1.79 16 24 H 0.06 0.78 7.59 -51.93 -0.39 0.39 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.88 6.64 -51.93 -0.34 0.54 16 27 H 0.41 8.15 8.77 -40.82 -0.36 7.80 16 28 H 0.28 6.70 8.29 -40.82 -0.34 6.36 16 29 H 0.13 1.61 5.93 -52.48 -0.31 1.30 16 30 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 31 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.13 1.95 8.05 -52.49 -0.42 1.53 16 LS Contribution 301.66 15.07 4.55 4.55 Total: -1.00 -30.30 301.66 -9.42 -39.71 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -3.07 Total: 7.36 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -4.22 Total: -7.24 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.46 Total: -45.05 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: 0.06 Total: -15.82 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.02 Total: 13.11 kcal Atomic # 16 Polarization: 5.55 SS G_CDS: -2.17 Total: 3.38 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.30 -9.42 -39.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005533251.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.472 kcal (2) G-P(sol) polarization free energy of solvation -30.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds