Wall clock time and date at job start Tue Mar 31 2020 05:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.71017 * 125.53565 * 2 1 4 4 C 1.75962 * 90.64646 * 180.09621 * 3 2 1 5 5 N 1.37416 * 125.19975 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99662 * 359.69384 * 5 4 3 7 7 O 1.21963 * 120.00498 * 359.97438 * 6 5 4 8 8 C 1.40445 * 119.99754 * 179.72865 * 6 5 4 9 9 H 1.08002 * 119.99693 * 0.26780 * 8 6 5 10 10 C 1.40061 * 120.00101 * 180.27583 * 8 6 5 11 11 N 1.30684 * 119.99826 * 359.97438 * 10 8 6 12 12 Si 1.86795 * 120.00061 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46983 * 89.99647 * 12 10 8 14 14 H 1.48499 * 109.47218 * 209.99716 * 12 10 8 15 15 H 1.48500 * 109.47317 * 330.00078 * 12 10 8 16 16 N 1.30355 * 109.60374 * 359.69874 * 4 3 2 17 17 C 1.31859 * 116.00166 * 0.22948 * 16 4 3 18 18 C 1.47957 * 122.59546 * 180.02562 * 17 16 4 19 19 C 1.39665 * 120.15130 * 144.69854 * 18 17 16 20 20 C 1.37904 * 119.84960 * 179.76690 * 19 18 17 21 21 C 1.38427 * 120.15076 * 0.51425 * 20 19 18 22 22 C 1.38431 * 120.29590 * 359.73962 * 21 20 19 23 23 C 1.37908 * 120.15061 * 0.02562 * 22 21 20 24 24 H 1.08999 * 109.47212 * 270.22978 * 1 2 3 25 25 H 1.09004 * 109.46627 * 30.23202 * 1 2 3 26 26 H 1.08997 * 109.47216 * 150.22440 * 1 2 3 27 27 H 0.97000 * 120.00445 * 179.69041 * 5 4 3 28 28 H 0.96999 * 119.99856 * 180.02562 * 11 10 8 29 29 H 1.08003 * 120.07457 * 0.02562 * 19 18 17 30 30 H 1.08007 * 119.92981 * 180.27309 * 20 19 18 31 31 H 1.07996 * 119.85767 * 179.72083 * 21 20 19 32 32 H 1.08001 * 119.92496 * 180.02562 * 22 21 20 33 33 H 1.08000 * 120.07278 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5010 1.3917 0.0000 4 6 3.9443 0.3852 -0.0030 5 7 5.2363 0.8532 -0.0048 6 6 5.4723 2.1801 -0.0106 7 8 4.5393 2.9655 -0.0147 8 6 6.7928 2.6584 -0.0067 9 1 7.6190 1.9629 -0.0034 10 6 7.0381 4.0374 -0.0069 11 7 6.0383 4.8789 -0.0112 12 14 8.7944 4.6736 -0.0009 13 1 9.2649 4.8410 -1.3995 14 1 8.8443 5.9828 0.6982 15 1 9.6702 3.7028 0.7031 16 7 3.6007 -0.8723 0.0027 17 6 2.3051 -1.1175 0.0045 18 6 1.7537 -2.4904 0.0114 19 6 0.5780 -2.7708 0.7111 20 6 0.0670 -4.0516 0.7094 21 6 0.7224 -5.0607 0.0249 22 6 1.8910 -4.7909 -0.6663 23 6 2.4103 -3.5134 -0.6768 24 1 -0.3633 0.0041 1.0276 25 1 -0.3633 0.8880 -0.5175 26 1 -0.3633 -0.8920 -0.5103 27 1 5.9785 0.2286 -0.0018 28 1 6.2082 5.8339 -0.0117 29 1 0.0679 -1.9853 1.2489 30 1 -0.8446 -4.2689 1.2464 31 1 0.3204 -6.0631 0.0304 32 1 2.3972 -5.5826 -1.1986 33 1 3.3219 -3.3042 -1.2169 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005533251.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:45 Heat of formation + Delta-G solvation = 3.616350 kcal Electronic energy + Delta-G solvation = -19198.782916 eV Core-core repulsion = 16121.900594 eV Total energy + Delta-G solvation = -3076.882321 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.06601 -40.16603 -39.00253 -35.74405 -34.67187 -33.35050 -31.90687 -31.29414 -29.41205 -27.05719 -24.95389 -23.77228 -23.21787 -22.14102 -20.91952 -19.42794 -18.42526 -17.59510 -17.49837 -17.24636 -16.32519 -16.24888 -15.93248 -15.46424 -14.85323 -14.77614 -14.52631 -14.29931 -13.77077 -13.68913 -13.65626 -13.34511 -13.17555 -12.86670 -12.81219 -12.51002 -12.06713 -11.96772 -11.61975 -11.40354 -11.00402 -10.66648 -10.24327 -10.05358 -9.81039 -9.67076 -8.52687 -8.51418 -7.17389 -0.22155 0.36099 0.43155 0.54343 1.25098 1.38020 1.40647 1.57424 1.88472 2.12615 2.33677 2.44332 2.99565 3.46381 3.63853 4.00833 4.15814 4.20352 4.27349 4.35422 4.56649 4.66276 4.73611 4.79084 4.96185 5.11629 5.13572 5.19328 5.23642 5.59912 5.62174 5.63120 5.72899 5.79461 5.87627 6.12242 6.59083 6.74188 7.15900 8.07905 8.38466 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.035824 B = 0.003741 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.417354 B = 7482.999701 C = 8164.886621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.331 4.331 3 S 0.221 5.779 4 C 0.265 3.735 5 N -0.634 5.634 6 C 0.516 3.484 7 O -0.587 6.587 8 C -0.544 4.544 9 H 0.096 0.904 10 C 0.035 3.965 11 N -0.783 5.783 12 Si 1.005 2.995 13 H -0.259 1.259 14 H -0.269 1.269 15 H -0.249 1.249 16 N -0.535 5.535 17 C 0.093 3.907 18 C -0.030 4.030 19 C -0.114 4.114 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.125 4.125 23 C -0.114 4.114 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.415 0.585 28 H 0.286 0.714 29 H 0.135 0.865 30 H 0.155 0.845 31 H 0.154 0.846 32 H 0.144 0.856 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.467 -13.498 0.381 15.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.455 4.455 3 S 0.474 5.526 4 C -0.103 4.103 5 N -0.283 5.283 6 C 0.328 3.672 7 O -0.475 6.475 8 C -0.579 4.579 9 H 0.114 0.886 10 C -0.185 4.185 11 N -0.410 5.410 12 Si 0.824 3.176 13 H -0.184 1.184 14 H -0.193 1.193 15 H -0.172 1.172 16 N -0.259 5.259 17 C -0.041 4.041 18 C -0.033 4.033 19 C -0.133 4.133 20 C -0.136 4.136 21 C -0.135 4.135 22 C -0.142 4.142 23 C -0.133 4.133 24 H 0.104 0.896 25 H 0.088 0.912 26 H 0.103 0.897 27 H 0.252 0.748 28 H 0.096 0.904 29 H 0.153 0.847 30 H 0.173 0.827 31 H 0.172 0.828 32 H 0.161 0.839 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.808 -11.961 0.383 14.859 hybrid contribution 1.156 -0.549 -0.111 1.285 sum -7.651 -12.510 0.272 14.667 Atomic orbital electron populations 1.20253 0.84911 1.03378 1.03135 1.26674 1.04064 0.98241 1.16509 1.85097 0.93833 1.04978 1.68682 1.24456 0.93421 0.91256 1.01187 1.43120 1.02604 1.09661 1.72894 1.17337 0.92131 0.78396 0.79357 1.90599 1.45604 1.53437 1.57836 1.20220 0.91883 0.94083 1.51680 0.88552 1.27003 1.04344 0.96272 0.90919 1.70127 1.35513 1.04276 1.31122 0.84885 0.74848 0.78208 0.79705 1.18381 1.19305 1.17187 1.66759 1.17885 1.15515 1.25775 1.19055 0.86236 0.94353 1.04486 1.18311 0.96078 0.89176 0.99691 1.21525 0.94723 0.98457 0.98554 1.21422 1.00916 0.91766 0.99538 1.21646 0.94879 1.00566 0.96412 1.21360 0.97077 0.95762 1.00040 1.21328 0.99358 0.93409 0.99199 0.89591 0.91152 0.89719 0.74753 0.90400 0.84722 0.82709 0.82813 0.83854 0.87468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.53 8.58 71.24 0.61 -0.92 16 2 C -0.33 -12.17 6.39 25.47 0.16 -12.01 16 3 S 0.22 9.82 20.19 -56.49 -1.14 8.68 16 4 C 0.26 12.44 8.32 179.53 1.49 13.94 16 5 N -0.63 -30.41 5.33 -319.46 -1.70 -32.11 16 6 C 0.52 28.46 7.48 84.78 0.63 29.09 16 7 O -0.59 -35.70 12.29 -5.20 -0.06 -35.76 16 8 C -0.54 -28.52 9.24 23.25 0.21 -28.30 16 9 H 0.10 4.49 7.85 -2.91 -0.02 4.46 16 10 C 0.04 1.79 5.49 85.31 0.47 2.26 16 11 N -0.78 -43.42 11.70 21.84 0.26 -43.16 16 12 Si 1.01 37.10 29.56 68.60 2.03 39.13 16 13 H -0.26 -9.17 7.11 99.48 0.71 -8.47 16 14 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 15 H -0.25 -8.61 7.11 99.48 0.71 -7.91 16 16 N -0.54 -23.51 10.48 -186.48 -1.95 -25.46 16 17 C 0.09 3.61 6.40 41.50 0.27 3.88 16 18 C -0.03 -0.97 5.60 -20.01 -0.11 -1.08 16 19 C -0.11 -2.85 8.08 22.54 0.18 -2.67 16 20 C -0.12 -2.24 10.03 22.24 0.22 -2.02 16 21 C -0.12 -2.10 10.05 22.36 0.22 -1.88 16 22 C -0.12 -2.74 10.03 22.24 0.22 -2.52 16 23 C -0.11 -3.39 9.66 22.54 0.22 -3.17 16 24 H 0.09 1.91 7.59 -2.39 -0.02 1.90 16 25 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 26 H 0.08 1.99 6.64 -2.39 -0.02 1.98 16 27 H 0.41 17.53 8.77 -92.71 -0.81 16.72 16 28 H 0.29 14.16 8.29 -92.71 -0.77 13.39 16 29 H 0.14 3.05 5.93 -2.91 -0.02 3.04 16 30 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 31 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 32 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.11 3.46 8.05 -2.91 -0.02 3.44 16 Total: -1.00 -69.36 301.66 2.58 -66.77 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: 0.35 Total: 27.31 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 4.81 Total: -5.39 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -3.40 Total: -100.74 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -0.06 Total: -35.76 kcal Atomic # 14 Polarization: 37.10 SS G_CDS: 2.03 Total: 39.13 kcal Atomic # 16 Polarization: 9.82 SS G_CDS: -1.14 Total: 8.68 kcal Total: -69.36 2.58 -66.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005533251.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.391 kcal (2) G-P(sol) polarization free energy of solvation -69.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds