Wall clock time and date at job start Tue Mar 31 2020 06:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86803 * 120.00171 * 2 1 4 4 H 1.48497 * 109.47403 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47071 * 300.00653 * 3 2 1 6 6 H 1.48500 * 109.46717 * 60.00132 * 3 2 1 7 7 C 1.38957 * 120.00333 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00324 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99635 * 359.97438 * 7 2 1 10 10 C 1.34770 * 120.00224 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99879 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00483 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.47210 * 180.02562 * 12 10 9 14 14 C 1.39677 * 119.99713 * 180.02562 * 13 12 10 15 15 C 1.38929 * 120.07808 * 0.02562 * 14 13 12 16 16 C 1.38077 * 119.92794 * 179.97438 * 15 14 13 17 17 C 1.38310 * 120.07190 * 0.02562 * 16 15 14 18 18 C 1.38266 * 120.15318 * 359.97438 * 17 16 15 19 19 C 1.50694 * 119.96263 * 180.02562 * 18 17 16 20 20 F 1.39900 * 109.47473 * 269.97943 * 19 18 17 21 21 F 1.39906 * 109.47109 * 29.98177 * 19 18 17 22 22 F 1.39901 * 109.46841 * 149.97828 * 19 18 17 23 23 C 1.38127 * 120.07232 * 0.02562 * 18 17 16 24 24 H 0.97000 * 120.00317 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99766 * 0.02562 * 9 7 2 26 26 H 1.08999 * 109.47026 * 60.00544 * 12 10 9 27 27 H 1.08994 * 109.47227 * 300.00599 * 12 10 9 28 28 H 0.96997 * 120.00114 * 0.02562 * 13 12 10 29 29 H 1.08007 * 120.03219 * 359.95899 * 15 14 13 30 30 H 1.07997 * 119.96509 * 180.02562 * 16 15 14 31 31 H 1.08006 * 119.92282 * 179.97438 * 17 16 15 32 32 H 1.07990 * 120.03649 * 180.27541 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8892 2.3965 -1.2124 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2437 -4.8630 -0.0010 13 7 2.1958 -5.9764 -0.0017 14 6 1.7301 -7.2933 -0.0019 15 6 0.3646 -7.5490 -0.0019 16 6 -0.0923 -8.8520 -0.0026 17 6 0.8079 -9.9021 -0.0028 18 6 2.1676 -9.6512 -0.0028 19 6 3.1446 -10.7986 -0.0036 20 9 3.4474 -11.1541 1.3152 21 9 2.5770 -11.8940 -0.6633 22 9 4.3163 -10.4128 -0.6634 23 6 2.6314 -8.3502 -0.0021 24 1 -0.4850 0.8400 -0.0004 25 1 0.3534 -2.3906 -0.0005 26 1 0.6161 -4.9206 -0.8903 27 1 0.6181 -4.9209 0.8896 28 1 3.1494 -5.7992 -0.0021 29 1 -0.3388 -6.7294 -0.0011 30 1 -1.1537 -9.0515 -0.0031 31 1 0.4478 -10.9204 -0.0029 32 1 3.6935 -8.1549 -0.0066 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020042367.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:15 Heat of formation + Delta-G solvation = -164.293942 kcal Electronic energy + Delta-G solvation = -21603.078062 eV Core-core repulsion = 17534.304992 eV Total energy + Delta-G solvation = -4068.773069 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.22472 -47.74112 -47.68806 -39.69051 -38.38890 -35.37434 -34.06422 -31.81492 -31.48436 -30.09976 -26.86572 -26.05921 -24.42475 -22.67812 -21.42053 -19.55833 -18.57258 -18.52070 -18.40602 -18.12191 -16.74758 -16.24981 -15.59857 -15.14825 -14.94104 -14.64375 -14.57351 -14.46326 -14.15542 -14.08069 -13.95990 -13.85258 -13.66107 -13.48015 -13.28171 -12.72810 -12.24556 -12.20982 -11.76248 -11.63698 -11.20843 -11.18403 -10.46265 -10.38146 -10.22248 -9.71304 -9.25347 -8.71936 -8.18062 -7.43458 -6.59012 -4.00933 0.95356 1.43316 2.58502 3.05252 3.18257 3.24356 3.40920 3.54686 3.65650 3.70603 4.01481 4.07565 4.37595 4.72938 4.80432 5.02294 5.08904 5.10277 5.34600 5.43861 5.56117 5.73802 5.76112 5.98467 6.08418 6.19518 6.33676 6.58584 7.29447 7.39679 7.82567 7.90773 8.37276 8.97892 9.30824 9.78776 10.57910 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.039943 B = 0.002821 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.830950 B = 9923.455694 C =10444.487076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.427 3.573 11 O -0.594 6.594 12 C 0.111 3.889 13 N -0.720 5.720 14 C 0.229 3.771 15 C -0.175 4.175 16 C -0.069 4.069 17 C -0.145 4.145 18 C -0.133 4.133 19 C 0.508 3.492 20 F -0.178 7.178 21 F -0.179 7.179 22 F -0.178 7.178 23 C -0.155 4.155 24 H 0.274 0.726 25 H 0.395 0.605 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.414 0.586 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.717 -18.084 -0.008 18.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.176 4.176 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.435 4.435 8 H 0.124 0.876 9 N -0.184 5.184 10 C 0.213 3.787 11 O -0.480 6.480 12 C -0.017 4.017 13 N -0.349 5.349 14 C 0.122 3.878 15 C -0.198 4.198 16 C -0.088 4.088 17 C -0.166 4.166 18 C -0.135 4.135 19 C 0.454 3.546 20 F -0.160 7.160 21 F -0.161 7.161 22 F -0.159 7.159 23 C -0.179 4.179 24 H 0.084 0.916 25 H 0.229 0.771 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.253 0.747 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.145 0.855 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.145 -17.724 -0.007 17.761 hybrid contribution 0.251 0.770 0.000 0.810 sum -0.893 -16.953 -0.008 16.977 Atomic orbital electron populations 1.69605 1.06027 1.28506 1.49377 1.25321 0.95674 0.99961 0.96682 0.85756 0.79739 0.80739 0.77881 1.19095 1.20553 1.20559 1.19788 0.93522 0.81967 1.48197 0.87624 1.41797 1.09398 1.04502 1.62697 1.19685 0.88346 0.84901 0.85794 1.90518 1.13747 1.86705 1.57059 1.21000 0.92125 0.86488 1.02135 1.44572 1.10060 1.00851 1.79407 1.17697 0.92595 0.84655 0.92818 1.20946 0.93668 0.97805 1.07363 1.20839 0.99485 0.91495 0.96945 1.20580 0.90982 0.99979 1.05050 1.19566 0.93792 0.91974 1.08191 1.18383 0.80067 0.82497 0.73665 1.93217 1.93739 1.92818 1.36203 1.93174 1.84732 1.56957 1.81187 1.93192 1.50659 1.90941 1.81134 1.20265 0.99905 0.90160 1.07524 0.91593 0.77124 0.90387 0.90391 0.74725 0.85054 0.85118 0.85451 0.84957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.16 13.05 55.50 0.72 -22.44 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.14 29.55 -169.99 -5.02 15.11 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 6 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.31 -8.11 9.68 -14.93 -0.14 -8.25 16 8 H 0.11 2.96 7.16 -52.49 -0.38 2.58 16 9 N -0.55 -13.02 5.29 -10.96 -0.06 -13.08 16 10 C 0.43 9.36 7.85 -10.99 -0.09 9.27 16 11 O -0.59 -15.04 15.24 5.54 0.08 -14.96 16 12 C 0.11 1.78 5.39 -5.20 -0.03 1.75 16 13 N -0.72 -11.10 5.70 -59.81 -0.34 -11.44 16 14 C 0.23 3.11 6.65 -83.78 -0.56 2.55 16 15 C -0.17 -2.05 9.31 -39.38 -0.37 -2.42 16 16 C -0.07 -0.70 10.04 -39.61 -0.40 -1.09 16 17 C -0.15 -1.55 9.40 -39.54 -0.37 -1.92 16 18 C -0.13 -1.60 5.45 -104.66 -0.57 -2.17 16 19 C 0.51 5.95 3.36 36.00 0.12 6.07 16 20 F -0.18 -2.16 17.30 2.25 0.04 -2.12 16 21 F -0.18 -2.03 16.46 2.25 0.04 -1.99 16 22 F -0.18 -2.19 16.46 2.25 0.04 -2.15 16 23 C -0.16 -2.01 9.25 -39.38 -0.36 -2.38 16 24 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 25 H 0.40 8.84 7.90 -40.82 -0.32 8.52 16 26 H 0.08 1.11 7.95 -51.93 -0.41 0.70 16 27 H 0.08 1.11 7.95 -51.93 -0.41 0.70 16 28 H 0.41 6.90 7.45 -40.82 -0.30 6.59 16 29 H 0.13 1.38 6.74 -52.48 -0.35 1.03 16 30 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.13 1.12 7.60 -52.48 -0.40 0.73 16 32 H 0.13 1.64 7.60 -52.49 -0.40 1.24 16 LS Contribution 298.96 15.07 4.51 4.51 Total: -1.00 -28.69 298.96 -5.39 -34.09 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -2.54 Total: 12.48 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -2.86 Total: 1.99 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: 0.33 Total: -46.96 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: 0.08 Total: -14.96 kcal Atomic # 9 Polarization: -6.37 SS G_CDS: 0.11 Total: -6.26 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.69 -5.39 -34.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020042367.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.209 kcal (2) G-P(sol) polarization free energy of solvation -28.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds