Wall clock time and date at job start Tue Mar 31 2020 06:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86803 * 120.00171 * 2 1 4 4 H 1.48497 * 109.47403 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47071 * 300.00653 * 3 2 1 6 6 H 1.48500 * 109.46717 * 60.00132 * 3 2 1 7 7 C 1.38957 * 120.00333 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00324 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99635 * 359.97438 * 7 2 1 10 10 C 1.34770 * 120.00224 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99879 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00483 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.47210 * 180.02562 * 12 10 9 14 14 C 1.39677 * 119.99713 * 180.02562 * 13 12 10 15 15 C 1.38929 * 120.07808 * 0.02562 * 14 13 12 16 16 C 1.38077 * 119.92794 * 179.97438 * 15 14 13 17 17 C 1.38310 * 120.07190 * 0.02562 * 16 15 14 18 18 C 1.38266 * 120.15318 * 359.97438 * 17 16 15 19 19 C 1.50694 * 119.96263 * 180.02562 * 18 17 16 20 20 F 1.39900 * 109.47473 * 269.97943 * 19 18 17 21 21 F 1.39906 * 109.47109 * 29.98177 * 19 18 17 22 22 F 1.39901 * 109.46841 * 149.97828 * 19 18 17 23 23 C 1.38127 * 120.07232 * 0.02562 * 18 17 16 24 24 H 0.97000 * 120.00317 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99766 * 0.02562 * 9 7 2 26 26 H 1.08999 * 109.47026 * 60.00544 * 12 10 9 27 27 H 1.08994 * 109.47227 * 300.00599 * 12 10 9 28 28 H 0.96997 * 120.00114 * 0.02562 * 13 12 10 29 29 H 1.08007 * 120.03219 * 359.95899 * 15 14 13 30 30 H 1.07997 * 119.96509 * 180.02562 * 16 15 14 31 31 H 1.08006 * 119.92282 * 179.97438 * 17 16 15 32 32 H 1.07990 * 120.03649 * 180.27541 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8892 2.3965 -1.2124 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2437 -4.8630 -0.0010 13 7 2.1958 -5.9764 -0.0017 14 6 1.7301 -7.2933 -0.0019 15 6 0.3646 -7.5490 -0.0019 16 6 -0.0923 -8.8520 -0.0026 17 6 0.8079 -9.9021 -0.0028 18 6 2.1676 -9.6512 -0.0028 19 6 3.1446 -10.7986 -0.0036 20 9 3.4474 -11.1541 1.3152 21 9 2.5770 -11.8940 -0.6633 22 9 4.3163 -10.4128 -0.6634 23 6 2.6314 -8.3502 -0.0021 24 1 -0.4850 0.8400 -0.0004 25 1 0.3534 -2.3906 -0.0005 26 1 0.6161 -4.9206 -0.8903 27 1 0.6181 -4.9209 0.8896 28 1 3.1494 -5.7992 -0.0021 29 1 -0.3388 -6.7294 -0.0011 30 1 -1.1537 -9.0515 -0.0031 31 1 0.4478 -10.9204 -0.0029 32 1 3.6935 -8.1549 -0.0066 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020042367.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:15 Heat of formation + Delta-G solvation = -182.381273 kcal Electronic energy + Delta-G solvation = -21603.862387 eV Core-core repulsion = 17534.304992 eV Total energy + Delta-G solvation = -4069.557395 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -51.16249 -48.67710 -48.63251 -40.79117 -39.97995 -36.63669 -35.85945 -33.39201 -32.69826 -31.24472 -28.24781 -27.05933 -26.08754 -23.58541 -22.47092 -21.18804 -20.04930 -19.53323 -19.48290 -19.31022 -18.12841 -17.16970 -17.07202 -16.41216 -16.36992 -16.16700 -15.76437 -15.52888 -15.42786 -15.09154 -14.89211 -14.79653 -14.78084 -14.57097 -14.51912 -14.06099 -13.56555 -13.48857 -13.43937 -12.93606 -12.57310 -12.45714 -12.13587 -12.07606 -11.59606 -11.24546 -10.55193 -10.13065 -10.09943 -8.52728 -8.48075 -6.02072 0.04586 0.53283 1.33942 1.42106 1.55113 1.65234 1.91849 2.17504 2.37286 2.65104 2.76832 3.08508 3.14984 3.16135 3.44818 3.92734 4.16247 4.17504 4.23979 4.41969 4.45853 4.48945 4.59208 4.85322 5.16885 5.31360 5.37213 5.47049 5.69475 5.90073 6.25827 6.49967 6.66374 7.04306 7.44710 7.97208 8.64186 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.039943 B = 0.002821 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.830950 B = 9923.455694 C =10444.487076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.007 4.007 3 Si 0.992 3.008 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.080 0.920 9 N -0.559 5.559 10 C 0.428 3.572 11 O -0.632 6.632 12 C 0.127 3.873 13 N -0.733 5.733 14 C 0.210 3.790 15 C -0.176 4.176 16 C -0.062 4.062 17 C -0.139 4.139 18 C -0.144 4.144 19 C 0.511 3.489 20 F -0.181 7.181 21 F -0.175 7.175 22 F -0.184 7.184 23 C -0.168 4.168 24 H 0.280 0.720 25 H 0.401 0.599 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.404 0.596 29 H 0.146 0.854 30 H 0.166 0.834 31 H 0.149 0.851 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.400 -18.966 -0.020 19.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.208 4.208 3 Si 0.816 3.184 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.098 0.902 9 N -0.195 5.195 10 C 0.215 3.785 11 O -0.520 6.520 12 C 0.000 4.000 13 N -0.363 5.363 14 C 0.105 3.895 15 C -0.198 4.198 16 C -0.080 4.080 17 C -0.159 4.159 18 C -0.146 4.146 19 C 0.457 3.543 20 F -0.163 7.163 21 F -0.156 7.156 22 F -0.165 7.165 23 C -0.191 4.191 24 H 0.090 0.910 25 H 0.235 0.765 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.241 0.759 29 H 0.164 0.836 30 H 0.184 0.816 31 H 0.167 0.833 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.869 -18.646 -0.020 18.866 hybrid contribution 0.764 0.892 0.002 1.174 sum -2.105 -17.755 -0.018 17.879 Atomic orbital electron populations 1.69651 1.06771 1.29549 1.49346 1.26029 0.96532 1.02391 0.95826 0.84880 0.78049 0.77080 0.78407 1.19854 1.19532 1.19545 1.19711 0.92801 0.83831 1.50440 0.90171 1.41821 1.09592 1.04481 1.63594 1.20700 0.88191 0.86353 0.83250 1.90493 1.15871 1.87666 1.57991 1.20885 0.91578 0.83273 1.04305 1.44516 1.09302 1.01442 1.81068 1.17856 0.93621 0.83693 0.94289 1.21238 0.92936 0.99192 1.06461 1.21238 1.01175 0.90428 0.95201 1.20957 0.90353 1.01429 1.03211 1.19672 0.94620 0.91493 1.08792 1.18359 0.79882 0.82588 0.73487 1.93210 1.93770 1.92851 1.36440 1.93179 1.84612 1.56757 1.81090 1.93180 1.51082 1.91026 1.81250 1.20308 0.99858 0.90715 1.08233 0.91030 0.76452 0.88032 0.88041 0.75909 0.83608 0.81621 0.83289 0.85520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.83 13.05 21.66 0.28 -46.54 16 2 C -0.01 -0.35 5.50 84.93 0.47 0.12 16 3 Si 0.99 41.20 29.55 68.60 2.03 43.22 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.34 -18.35 9.68 84.04 0.81 -17.54 16 8 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 9 N -0.56 -26.81 5.29 -306.98 -1.62 -28.43 16 10 C 0.43 18.89 7.85 87.66 0.69 19.58 16 11 O -0.63 -32.94 15.24 -3.08 -0.05 -32.99 16 12 C 0.13 3.93 5.39 85.63 0.46 4.39 16 13 N -0.73 -22.29 5.70 -343.14 -1.96 -24.25 16 14 C 0.21 5.44 6.65 38.21 0.25 5.69 16 15 C -0.18 -3.62 9.31 22.40 0.21 -3.41 16 16 C -0.06 -1.02 10.04 22.25 0.22 -0.80 16 17 C -0.14 -2.54 9.40 22.29 0.21 -2.33 16 18 C -0.14 -3.24 5.45 -19.89 -0.11 -3.35 16 19 C 0.51 11.40 3.36 71.23 0.24 11.64 16 20 F -0.18 -4.20 17.30 44.97 0.78 -3.43 16 21 F -0.18 -3.65 16.46 44.97 0.74 -2.91 16 22 F -0.18 -4.46 16.46 44.97 0.74 -3.72 16 23 C -0.17 -4.26 9.25 22.40 0.21 -4.05 16 24 H 0.28 13.41 8.31 -92.71 -0.77 12.64 16 25 H 0.40 17.93 7.90 -92.71 -0.73 17.20 16 26 H 0.10 2.67 7.95 -2.39 -0.02 2.65 16 27 H 0.10 2.67 7.95 -2.39 -0.02 2.65 16 28 H 0.40 13.81 7.45 -92.71 -0.69 13.12 16 29 H 0.15 2.54 6.74 -2.91 -0.02 2.52 16 30 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 31 H 0.15 2.07 7.60 -2.91 -0.02 2.04 16 32 H 0.13 3.23 7.60 -2.92 -0.02 3.21 16 Total: -1.00 -62.23 298.96 4.39 -57.84 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: -0.22 Total: 31.28 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 3.66 Total: 9.94 kcal Atomic # 7 Polarization: -95.93 SS G_CDS: -3.30 Total: -99.23 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -0.05 Total: -32.99 kcal Atomic # 9 Polarization: -12.32 SS G_CDS: 2.26 Total: -10.06 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.22 kcal Total: -62.23 4.39 -57.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020042367.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.541 kcal (2) G-P(sol) polarization free energy of solvation -62.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds