Wall clock time and date at job start Tue Mar 31 2020 06:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86803 * 120.00393 * 2 1 4 4 H 1.48498 * 109.47006 * 240.00426 * 3 2 1 5 5 H 1.48503 * 109.46574 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46939 * 120.00056 * 3 2 1 7 7 C 1.38957 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99654 * 180.02562 * 7 2 1 9 9 N 1.37094 * 120.00276 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00080 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00113 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99580 * 180.02562 * 10 9 7 13 13 N 1.46507 * 109.46743 * 180.02562 * 12 10 9 14 14 C 1.39673 * 119.99644 * 179.97438 * 13 12 10 15 15 C 1.38918 * 120.07035 * 179.97438 * 14 13 12 16 16 C 1.38103 * 119.92232 * 180.27899 * 15 14 13 17 17 C 1.38289 * 120.07411 * 359.50929 * 16 15 14 18 18 C 1.50703 * 119.92474 * 180.25776 * 17 16 15 19 19 F 1.39903 * 109.47036 * 270.21151 * 18 17 16 20 20 F 1.39894 * 109.46926 * 30.20906 * 18 17 16 21 21 F 1.39895 * 109.47305 * 150.21252 * 18 17 16 22 22 C 1.38281 * 120.14983 * 0.47107 * 17 16 15 23 23 C 1.38102 * 120.07722 * 359.78374 * 22 17 16 24 24 H 0.97003 * 119.99631 * 359.97438 * 1 2 3 25 25 H 0.97001 * 119.99359 * 0.02562 * 9 7 2 26 26 H 1.08996 * 109.47368 * 60.00371 * 12 10 9 27 27 H 1.09005 * 109.47092 * 299.99849 * 12 10 9 28 28 H 0.97003 * 119.99776 * 0.02562 * 13 12 10 29 29 H 1.08002 * 120.03585 * 359.97438 * 15 14 13 30 30 H 1.07998 * 119.96426 * 179.72368 * 16 15 14 31 31 H 1.07998 * 119.96120 * 179.76664 * 22 17 16 32 32 H 1.08001 * 120.04035 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1018 1.6963 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2436 -4.8630 -0.0022 13 7 2.1956 -5.9765 -0.0027 14 6 1.7300 -7.2933 -0.0027 15 6 2.6313 -8.3504 -0.0037 16 6 2.1675 -9.6512 -0.0096 17 6 0.8076 -9.9021 -0.0042 18 6 0.3052 -11.3229 -0.0048 19 9 0.1487 -11.7617 -1.3240 20 9 1.2272 -12.1438 0.6533 21 9 -0.9266 -11.3823 0.6556 22 6 -0.0924 -8.8522 -0.0028 23 6 0.3646 -7.5490 -0.0022 24 1 -0.4850 0.8401 0.0004 25 1 0.3533 -2.3906 -0.0005 26 1 0.6167 -4.9201 -0.8919 27 1 0.6173 -4.9213 0.8881 28 1 3.1493 -5.7993 -0.0022 29 1 3.6935 -8.1551 -0.0049 30 1 2.8677 -10.4735 -0.0149 31 1 -1.1538 -9.0516 -0.0024 32 1 -0.3388 -6.7294 -0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020046323.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:30 Heat of formation + Delta-G solvation = -166.367769 kcal Electronic energy + Delta-G solvation = -21461.860824 eV Core-core repulsion = 17392.997826 eV Total energy + Delta-G solvation = -4068.862997 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.15436 -47.68530 -47.61528 -39.69004 -38.40736 -35.46072 -34.09538 -31.54831 -31.17552 -30.61218 -27.52281 -25.21466 -24.31986 -22.89483 -21.39931 -19.59491 -18.51814 -18.44709 -18.41238 -18.10396 -17.43633 -15.81478 -15.58390 -14.97564 -14.83601 -14.61664 -14.51003 -14.41423 -14.13137 -14.09445 -13.87969 -13.80040 -13.57753 -13.39160 -13.29609 -13.23368 -12.33833 -12.22626 -11.71054 -11.55705 -11.18391 -11.14093 -10.57144 -10.38825 -10.29251 -9.71061 -9.12989 -8.74799 -8.20003 -7.55578 -6.60406 -4.02618 1.17332 1.28939 2.71627 3.07508 3.16344 3.19025 3.38864 3.55168 3.63885 3.82484 4.04810 4.05841 4.46554 4.69858 4.78153 4.82224 5.07243 5.22378 5.38177 5.46544 5.58258 5.72864 5.82750 5.95850 6.07056 6.19368 6.24716 6.60728 7.23617 7.37694 7.77549 7.86200 8.35137 8.95792 9.28614 9.76446 10.56288 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.049062 B = 0.002617 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.569790 B =10696.259145 C =11087.034899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.307 4.307 8 H 0.105 0.895 9 N -0.547 5.547 10 C 0.426 3.574 11 O -0.595 6.595 12 C 0.107 3.893 13 N -0.713 5.713 14 C 0.258 3.742 15 C -0.203 4.203 16 C -0.020 4.020 17 C -0.262 4.262 18 C 0.514 3.486 19 F -0.183 7.183 20 F -0.183 7.183 21 F -0.183 7.183 22 C -0.018 4.018 23 C -0.207 4.207 24 H 0.276 0.724 25 H 0.395 0.605 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.415 0.585 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.027 -17.807 -0.011 17.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.176 4.176 3 Si 0.760 3.240 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.437 4.437 8 H 0.123 0.877 9 N -0.182 5.182 10 C 0.212 3.788 11 O -0.482 6.482 12 C -0.021 4.021 13 N -0.340 5.340 14 C 0.149 3.851 15 C -0.226 4.226 16 C -0.039 4.039 17 C -0.266 4.266 18 C 0.460 3.540 19 F -0.165 7.165 20 F -0.165 7.165 21 F -0.164 7.164 22 C -0.037 4.037 23 C -0.230 4.230 24 H 0.086 0.914 25 H 0.229 0.771 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.254 0.746 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.509 -17.427 -0.012 17.492 hybrid contribution -0.024 0.709 0.000 0.710 sum -1.533 -16.718 -0.011 16.788 Atomic orbital electron populations 1.69593 1.06033 1.28765 1.49053 1.25326 0.95677 0.99976 0.96587 0.85865 0.78816 0.80042 0.79237 1.19712 1.20773 1.19719 1.19687 0.93470 0.81981 1.48531 0.87718 1.41785 1.09417 1.04489 1.62519 1.19660 0.88329 0.84882 0.85968 1.90513 1.13729 1.86689 1.57245 1.21061 0.92169 0.86505 1.02376 1.44739 1.10257 1.01202 1.77813 1.18087 0.92989 0.84799 0.89233 1.20545 0.99457 0.90986 1.11597 1.20545 0.93356 0.96849 0.93170 1.19533 0.95710 0.90593 1.20727 1.18301 0.74896 0.87401 0.73369 1.93203 1.95523 1.91244 1.36513 1.93156 1.66514 1.75469 1.81337 1.93159 1.45075 1.96969 1.81219 1.20593 0.99081 0.91265 0.92802 1.20657 0.93791 0.96947 1.11642 0.91445 0.77088 0.90169 0.90180 0.74602 0.85083 0.85201 0.85156 0.84865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.07 13.05 55.50 0.72 -22.34 16 2 C 0.03 0.70 5.50 -17.47 -0.10 0.60 16 3 Si 0.93 20.03 29.55 -169.99 -5.02 15.00 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.31 -8.11 9.68 -14.93 -0.14 -8.25 16 8 H 0.11 2.89 7.16 -52.48 -0.38 2.52 16 9 N -0.55 -12.90 5.29 -10.96 -0.06 -12.95 16 10 C 0.43 9.22 7.85 -10.98 -0.09 9.13 16 11 O -0.60 -14.86 15.24 5.55 0.08 -14.77 16 12 C 0.11 1.69 5.39 -5.19 -0.03 1.67 16 13 N -0.71 -10.65 5.70 -59.80 -0.34 -10.99 16 14 C 0.26 3.40 6.65 -83.78 -0.56 2.84 16 15 C -0.20 -2.39 9.90 -39.38 -0.39 -2.78 16 16 C -0.02 -0.22 9.39 -39.61 -0.37 -0.59 16 17 C -0.26 -3.02 5.45 -104.59 -0.57 -3.59 16 18 C 0.51 5.79 3.36 36.01 0.12 5.91 16 19 F -0.18 -2.15 17.30 2.25 0.04 -2.11 16 20 F -0.18 -2.07 16.46 2.25 0.04 -2.03 16 21 F -0.18 -2.08 16.46 2.25 0.04 -2.04 16 22 C -0.02 -0.21 9.39 -39.62 -0.37 -0.58 16 23 C -0.21 -2.50 9.31 -39.38 -0.37 -2.86 16 24 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 25 H 0.40 8.80 7.90 -40.82 -0.32 8.48 16 26 H 0.08 1.13 7.95 -51.93 -0.41 0.72 16 27 H 0.08 1.13 7.95 -51.93 -0.41 0.72 16 28 H 0.41 6.62 7.45 -40.82 -0.30 6.31 16 29 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.13 1.18 7.60 -52.49 -0.40 0.78 16 31 H 0.13 1.22 7.60 -52.49 -0.40 0.83 16 32 H 0.13 1.45 6.73 -52.49 -0.35 1.09 16 LS Contribution 298.96 15.07 4.51 4.51 Total: -1.00 -28.38 298.96 -5.39 -33.77 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -2.54 Total: 12.46 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -2.86 Total: 1.50 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: 0.33 Total: -46.29 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: 0.08 Total: -14.77 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 0.11 Total: -6.18 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.38 -5.39 -33.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020046323.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.593 kcal (2) G-P(sol) polarization free energy of solvation -28.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds