Wall clock time and date at job start Tue Mar 31 2020 06:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86803 * 120.00393 * 2 1 4 4 H 1.48498 * 109.47006 * 240.00426 * 3 2 1 5 5 H 1.48503 * 109.46574 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46939 * 120.00056 * 3 2 1 7 7 C 1.38957 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99654 * 180.02562 * 7 2 1 9 9 N 1.37094 * 120.00276 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00080 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00113 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99580 * 180.02562 * 10 9 7 13 13 N 1.46507 * 109.46743 * 180.02562 * 12 10 9 14 14 C 1.39673 * 119.99644 * 179.97438 * 13 12 10 15 15 C 1.38918 * 120.07035 * 179.97438 * 14 13 12 16 16 C 1.38103 * 119.92232 * 180.27899 * 15 14 13 17 17 C 1.38289 * 120.07411 * 359.50929 * 16 15 14 18 18 C 1.50703 * 119.92474 * 180.25776 * 17 16 15 19 19 F 1.39903 * 109.47036 * 270.21151 * 18 17 16 20 20 F 1.39894 * 109.46926 * 30.20906 * 18 17 16 21 21 F 1.39895 * 109.47305 * 150.21252 * 18 17 16 22 22 C 1.38281 * 120.14983 * 0.47107 * 17 16 15 23 23 C 1.38102 * 120.07722 * 359.78374 * 22 17 16 24 24 H 0.97003 * 119.99631 * 359.97438 * 1 2 3 25 25 H 0.97001 * 119.99359 * 0.02562 * 9 7 2 26 26 H 1.08996 * 109.47368 * 60.00371 * 12 10 9 27 27 H 1.09005 * 109.47092 * 299.99849 * 12 10 9 28 28 H 0.97003 * 119.99776 * 0.02562 * 13 12 10 29 29 H 1.08002 * 120.03585 * 359.97438 * 15 14 13 30 30 H 1.07998 * 119.96426 * 179.72368 * 16 15 14 31 31 H 1.07998 * 119.96120 * 179.76664 * 22 17 16 32 32 H 1.08001 * 120.04035 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1018 1.6963 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2436 -4.8630 -0.0022 13 7 2.1956 -5.9765 -0.0027 14 6 1.7300 -7.2933 -0.0027 15 6 2.6313 -8.3504 -0.0037 16 6 2.1675 -9.6512 -0.0096 17 6 0.8076 -9.9021 -0.0042 18 6 0.3052 -11.3229 -0.0048 19 9 0.1487 -11.7617 -1.3240 20 9 1.2272 -12.1438 0.6533 21 9 -0.9266 -11.3823 0.6556 22 6 -0.0924 -8.8522 -0.0028 23 6 0.3646 -7.5490 -0.0022 24 1 -0.4850 0.8401 0.0004 25 1 0.3533 -2.3906 -0.0005 26 1 0.6167 -4.9201 -0.8919 27 1 0.6173 -4.9213 0.8881 28 1 3.1493 -5.7993 -0.0022 29 1 3.6935 -8.1551 -0.0049 30 1 2.8677 -10.4735 -0.0149 31 1 -1.1538 -9.0516 -0.0024 32 1 -0.3388 -6.7294 -0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020046323.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:29 Heat of formation + Delta-G solvation = -183.947956 kcal Electronic energy + Delta-G solvation = -21462.623158 eV Core-core repulsion = 17392.997826 eV Total energy + Delta-G solvation = -4069.625331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -51.05128 -48.57725 -48.51951 -40.79630 -39.97533 -36.69404 -35.88538 -33.40098 -32.14160 -31.65298 -28.84736 -26.67644 -25.56623 -23.87654 -22.38969 -21.21006 -20.05500 -19.41564 -19.34188 -19.26693 -18.64275 -17.16837 -17.03732 -16.38742 -16.32286 -15.76411 -15.64689 -15.42990 -15.34343 -14.99735 -14.86014 -14.76644 -14.69898 -14.57717 -14.30732 -14.20847 -13.88462 -13.52798 -13.48226 -12.92681 -12.49332 -12.46213 -12.14761 -12.02534 -11.58396 -11.32019 -10.55856 -10.10572 -10.01043 -8.59382 -8.52522 -6.02158 0.24141 0.40238 1.37010 1.42068 1.52072 1.81635 1.91605 2.15358 2.36250 2.64636 2.92215 3.14736 3.15208 3.17065 3.57180 3.88657 3.97206 4.16310 4.34549 4.40983 4.46759 4.49811 4.63187 4.97838 5.13661 5.26743 5.35208 5.36720 5.68011 5.89054 6.21108 6.49137 6.64485 7.03702 7.44281 7.96225 8.63914 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.049062 B = 0.002617 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.569790 B =10696.259145 C =11087.034899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.007 4.007 3 Si 0.992 3.008 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.340 4.340 8 H 0.082 0.918 9 N -0.559 5.559 10 C 0.428 3.572 11 O -0.631 6.631 12 C 0.123 3.877 13 N -0.724 5.724 14 C 0.242 3.758 15 C -0.206 4.206 16 C -0.021 4.021 17 C -0.265 4.265 18 C 0.518 3.482 19 F -0.186 7.186 20 F -0.183 7.183 21 F -0.183 7.183 22 C -0.020 4.020 23 C -0.211 4.211 24 H 0.280 0.720 25 H 0.401 0.599 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.408 0.592 29 H 0.141 0.859 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.664 -18.576 0.004 18.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.208 4.208 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.469 4.469 8 H 0.100 0.900 9 N -0.195 5.195 10 C 0.216 3.784 11 O -0.519 6.519 12 C -0.005 4.005 13 N -0.352 5.352 14 C 0.135 3.865 15 C -0.228 4.228 16 C -0.040 4.040 17 C -0.269 4.269 18 C 0.464 3.536 19 F -0.167 7.167 20 F -0.164 7.164 21 F -0.164 7.164 22 C -0.039 4.039 23 C -0.233 4.233 24 H 0.090 0.910 25 H 0.235 0.765 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.246 0.754 29 H 0.159 0.841 30 H 0.166 0.834 31 H 0.167 0.833 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.180 -18.239 0.003 18.369 hybrid contribution 0.182 0.790 -0.003 0.810 sum -1.998 -17.449 0.000 17.563 Atomic orbital electron populations 1.69647 1.06825 1.29692 1.49196 1.26044 0.96521 1.02451 0.95785 0.84995 0.77823 0.76591 0.79011 1.19650 1.19490 1.19659 1.19652 0.92856 0.83796 1.50605 0.90007 1.41823 1.09602 1.04521 1.63521 1.20648 0.88184 0.86269 0.83345 1.90488 1.15732 1.87635 1.58046 1.20938 0.91702 0.83450 1.04423 1.44660 1.09574 1.01607 1.79376 1.18268 0.93792 0.84132 0.90326 1.20729 0.99993 0.91000 1.11125 1.20771 0.93656 0.97104 0.92481 1.19711 0.96089 0.90815 1.20263 1.18237 0.74858 0.87265 0.73225 1.93201 1.95537 1.91266 1.36726 1.93158 1.66504 1.75466 1.81318 1.93161 1.45093 1.96963 1.81208 1.20820 1.00088 0.90846 0.92161 1.20843 0.93531 0.97713 1.11251 0.91024 0.76492 0.87985 0.87997 0.75446 0.84115 0.83356 0.83341 0.83711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.83 13.05 21.66 0.28 -46.54 16 2 C -0.01 -0.35 5.50 84.93 0.47 0.11 16 3 Si 0.99 40.87 29.55 68.60 2.03 42.89 16 4 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 5 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 6 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.34 -18.24 9.68 84.04 0.81 -17.43 16 8 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 9 N -0.56 -26.57 5.29 -306.98 -1.62 -28.19 16 10 C 0.43 18.56 7.85 87.66 0.69 19.25 16 11 O -0.63 -32.04 15.24 -3.07 -0.05 -32.09 16 12 C 0.12 3.71 5.39 85.63 0.46 4.18 16 13 N -0.72 -20.89 5.70 -343.11 -1.96 -22.84 16 14 C 0.24 5.97 6.65 38.22 0.25 6.23 16 15 C -0.21 -4.53 9.90 22.40 0.22 -4.31 16 16 C -0.02 -0.42 9.39 22.25 0.21 -0.22 16 17 C -0.27 -5.53 5.45 -19.84 -0.11 -5.63 16 18 C 0.52 10.60 3.36 71.24 0.24 10.84 16 19 F -0.19 -4.00 17.30 44.97 0.78 -3.22 16 20 F -0.18 -3.77 16.46 44.97 0.74 -3.02 16 21 F -0.18 -3.78 16.46 44.97 0.74 -3.04 16 22 C -0.02 -0.41 9.39 22.25 0.21 -0.20 16 23 C -0.21 -4.60 9.31 22.40 0.21 -4.39 16 24 H 0.28 13.49 8.31 -92.71 -0.77 12.72 16 25 H 0.40 17.86 7.90 -92.71 -0.73 17.12 16 26 H 0.10 2.67 7.95 -2.39 -0.02 2.65 16 27 H 0.10 2.67 7.95 -2.38 -0.02 2.65 16 28 H 0.41 12.94 7.45 -92.71 -0.69 12.25 16 29 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 30 H 0.15 2.36 7.60 -2.91 -0.02 2.33 16 31 H 0.15 2.38 7.60 -2.91 -0.02 2.36 16 32 H 0.15 2.75 6.73 -2.91 -0.02 2.73 16 Total: -1.00 -60.37 298.96 4.39 -55.99 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: -0.22 Total: 31.65 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 3.66 Total: 8.43 kcal Atomic # 7 Polarization: -94.28 SS G_CDS: -3.30 Total: -97.58 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -0.05 Total: -32.09 kcal Atomic # 9 Polarization: -11.55 SS G_CDS: 2.26 Total: -9.29 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.89 kcal Total: -60.37 4.39 -55.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020046323.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.962 kcal (2) G-P(sol) polarization free energy of solvation -60.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds