Wall clock time and date at job start Tue Mar 31 2020 06:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86793 * 119.99961 * 2 1 4 4 H 1.48506 * 109.47264 * 270.00165 * 3 2 1 5 5 H 1.48497 * 109.47487 * 29.99949 * 3 2 1 6 6 H 1.48502 * 109.47112 * 150.00028 * 3 2 1 7 7 C 1.38754 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00002 * 179.97438 * 7 2 1 9 9 O 1.34920 * 119.99976 * 359.97438 * 7 2 1 10 10 C 1.34318 * 117.00233 * 180.02562 * 9 7 2 11 11 O 1.21207 * 119.99503 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00221 * 180.02562 * 10 9 7 13 13 C 1.52999 * 109.47050 * 179.97438 * 12 10 9 14 14 C 1.50698 * 109.47050 * 179.97438 * 13 12 10 15 15 N 1.30970 * 126.44172 * 90.25122 * 14 13 12 16 16 C 1.35217 * 105.58317 * 180.12002 * 15 14 13 17 17 C 1.48423 * 126.41715 * 179.90703 * 16 15 14 18 18 C 1.39328 * 120.12073 * 179.71435 * 17 16 15 19 19 C 1.38010 * 119.88098 * 179.97438 * 18 17 16 20 20 C 1.38325 * 120.12036 * 359.97438 * 19 18 17 21 21 C 1.38323 * 120.23744 * 0.02562 * 20 19 18 22 22 C 1.38017 * 120.12365 * 359.97438 * 21 20 19 23 23 N 1.30766 * 107.16940 * 359.64499 * 16 15 14 24 24 O 1.21294 * 110.09849 * 0.22279 * 23 16 15 25 25 H 0.96998 * 120.00261 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46971 * 59.99519 * 12 10 9 27 27 H 1.08999 * 109.46909 * 299.99708 * 12 10 9 28 28 H 1.09002 * 109.46881 * 59.99678 * 13 12 10 29 29 H 1.08999 * 109.47074 * 299.99666 * 13 12 10 30 30 H 1.08000 * 120.05605 * 359.97438 * 18 17 16 31 31 H 1.08006 * 119.94346 * 180.02562 * 19 18 17 32 32 H 1.07994 * 119.87991 * 179.72368 * 20 19 18 33 33 H 1.08001 * 119.93386 * 180.02562 * 21 20 19 34 34 H 1.07994 * 120.06263 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4959 2.0464 -1.4001 5 1 1.4459 2.6527 0.7000 6 1 3.5459 1.4401 0.7000 7 6 2.0082 -1.2016 -0.0005 8 1 3.0881 -1.2016 -0.0010 9 8 1.3336 -2.3701 -0.0005 10 6 2.0651 -3.4966 -0.0005 11 8 3.2755 -3.4331 -0.0010 12 6 1.3809 -4.8393 -0.0011 13 6 2.4346 -5.9486 -0.0016 14 6 1.7505 -7.2913 -0.0016 15 7 1.4010 -7.9864 -1.0552 16 6 0.8232 -9.1101 -0.5737 17 6 0.2565 -10.2228 -1.3760 18 6 -0.3056 -11.3277 -0.7401 19 6 -0.8317 -12.3593 -1.4910 20 6 -0.8021 -12.2974 -2.8725 21 6 -0.2452 -11.2028 -3.5090 22 6 0.2837 -10.1656 -2.7678 23 7 0.8623 -9.0356 0.7313 24 8 1.3908 -7.9990 1.0739 25 1 -0.4850 0.8400 0.0004 26 1 0.7584 -4.9295 -0.8914 27 1 0.7578 -4.9300 0.8886 28 1 3.0575 -5.8585 0.8884 29 1 3.0573 -5.8578 -0.8916 30 1 -0.3296 -11.3768 0.3385 31 1 -1.2680 -13.2161 -0.9991 32 1 -1.2108 -13.1088 -3.4563 33 1 -0.2251 -11.1594 -4.5879 34 1 0.7185 -9.3116 -3.2657 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026669481.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:15 Heat of formation + Delta-G solvation = 7.855728 kcal Electronic energy + Delta-G solvation = -20747.838077 eV Core-core repulsion = 17228.386718 eV Total energy + Delta-G solvation = -3519.451359 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.59963 -39.42476 -39.10711 -36.11290 -35.55496 -34.25960 -32.19938 -31.79410 -31.28080 -30.45543 -26.47691 -24.94630 -24.73886 -23.23552 -22.38936 -21.08444 -19.91720 -18.21716 -17.96045 -17.76012 -16.87124 -16.63022 -15.86118 -15.41403 -15.16711 -14.75883 -14.40211 -14.11835 -13.90756 -13.74452 -13.42627 -13.34644 -12.83758 -12.56672 -12.05443 -11.79400 -11.72474 -11.59256 -11.51290 -11.31919 -11.08901 -10.98093 -10.46675 -10.42100 -10.34379 -9.85143 -9.29922 -9.13904 -8.92450 -8.61517 -6.44484 -4.12831 0.46478 1.05892 1.22792 2.31205 2.70639 3.08458 3.17767 3.23581 3.33185 3.45896 3.53642 3.80526 3.95117 4.46892 4.62159 4.64229 4.74788 4.90350 5.01343 5.05622 5.09633 5.19921 5.25747 5.40491 5.55828 5.67345 5.72108 5.78554 5.99410 6.08524 6.11973 6.15509 6.18259 6.56668 6.67037 7.36155 7.90849 8.04886 8.64090 9.04075 9.78840 10.73285 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.035470 B = 0.002572 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.202463 B =10885.467918 C =11184.400286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.042 3.958 3 Si 0.944 3.056 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.383 4.383 8 H 0.097 0.903 9 O -0.211 6.211 10 C 0.400 3.600 11 O -0.557 6.557 12 C -0.101 4.101 13 C -0.014 4.014 14 C 0.202 3.798 15 N -0.475 5.475 16 C 0.208 3.792 17 C -0.019 4.019 18 C -0.085 4.085 19 C -0.124 4.124 20 C -0.104 4.104 21 C -0.123 4.123 22 C -0.075 4.075 23 N -0.380 5.380 24 O 0.082 5.918 25 H 0.270 0.730 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.113 0.887 29 H 0.121 0.879 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.578 -21.416 -3.486 21.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.162 4.162 3 Si 0.769 3.231 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.459 4.459 8 H 0.115 0.885 9 O -0.118 6.118 10 C 0.247 3.753 11 O -0.455 6.455 12 C -0.140 4.140 13 C -0.053 4.053 14 C -0.018 4.018 15 N -0.208 5.208 16 C -0.062 4.062 17 C -0.021 4.021 18 C -0.105 4.105 19 C -0.142 4.142 20 C -0.122 4.122 21 C -0.141 4.141 22 C -0.095 4.095 23 N -0.086 5.086 24 O 0.022 5.978 25 H 0.080 0.920 26 H 0.119 0.881 27 H 0.117 0.883 28 H 0.131 0.869 29 H 0.139 0.861 30 H 0.148 0.852 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.804 -21.911 -3.362 22.240 hybrid contribution 0.379 0.928 0.075 1.005 sum -1.425 -20.982 -3.288 21.286 Atomic orbital electron populations 1.69992 1.06041 1.27797 1.46246 1.25358 0.95822 0.98946 0.96106 0.85662 0.79040 0.79672 0.78760 1.19854 1.20334 1.19050 1.21241 0.92415 0.79705 1.52552 0.88504 1.83866 1.39360 1.13378 1.75190 1.22760 0.86529 0.87012 0.79038 1.90573 1.15519 1.88087 1.51325 1.20994 0.97919 0.89372 1.05741 1.20077 0.96530 0.80931 1.07786 1.28891 0.95116 0.97680 0.80111 1.72020 1.16289 1.03872 1.28629 1.23916 0.99781 0.94887 0.87637 1.17378 1.01330 0.91207 0.92156 1.21195 0.96319 0.92419 1.00563 1.21084 1.00338 0.98701 0.94055 1.21347 0.98123 0.98070 0.94710 1.21150 0.98859 0.93783 1.00330 1.21281 0.97106 0.98973 0.92106 1.74862 1.16291 1.02553 1.14924 1.85297 1.54259 1.22375 1.35846 0.92002 0.88146 0.88257 0.86893 0.86124 0.85190 0.85300 0.85543 0.85158 0.84484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.02 13.67 55.48 0.76 -24.26 16 2 C 0.04 1.16 5.49 -17.53 -0.10 1.07 16 3 Si 0.94 20.93 29.55 -169.99 -5.02 15.91 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 7 C -0.38 -11.05 9.65 30.92 0.30 -10.75 16 8 H 0.10 2.79 6.86 -52.49 -0.36 2.43 16 9 O -0.21 -5.85 9.75 -20.72 -0.20 -6.05 16 10 C 0.40 9.16 7.91 36.00 0.28 9.45 16 11 O -0.56 -13.77 15.22 -19.05 -0.29 -14.06 16 12 C -0.10 -1.65 5.79 -27.88 -0.16 -1.81 16 13 C -0.01 -0.20 5.13 -27.88 -0.14 -0.34 16 14 C 0.20 2.81 7.75 -12.99 -0.10 2.71 16 15 N -0.48 -7.03 11.26 -9.88 -0.11 -7.14 16 16 C 0.21 2.99 7.80 -156.11 -1.22 1.77 16 17 C -0.02 -0.23 5.88 -104.89 -0.62 -0.85 16 18 C -0.09 -0.89 9.69 -39.26 -0.38 -1.27 16 19 C -0.12 -1.00 10.03 -39.63 -0.40 -1.40 16 20 C -0.10 -0.78 10.04 -39.52 -0.40 -1.17 16 21 C -0.12 -1.03 10.03 -39.63 -0.40 -1.43 16 22 C -0.07 -0.80 9.70 -39.26 -0.38 -1.18 16 23 N -0.38 -5.58 11.86 30.97 0.37 -5.22 16 24 O 0.08 1.17 11.29 18.03 0.20 1.37 16 25 H 0.27 7.16 8.31 -40.82 -0.34 6.83 16 26 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 27 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.11 1.42 8.10 -51.93 -0.42 1.00 16 29 H 0.12 1.64 8.10 -51.93 -0.42 1.22 16 30 H 0.13 1.30 7.87 -52.49 -0.41 0.89 16 31 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 32 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 33 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.14 1.46 7.88 -52.49 -0.41 1.05 16 LS Contribution 316.38 15.07 4.77 4.77 Total: -1.00 -33.33 316.38 -6.51 -39.85 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -3.28 Total: 0.04 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -3.71 Total: -5.21 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 1.01 Total: -36.62 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.29 Total: -18.74 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.33 -6.51 -39.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026669481.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.701 kcal (2) G-P(sol) polarization free energy of solvation -33.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds