Wall clock time and date at job start Tue Mar 31 2020 06:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86793 * 119.99961 * 2 1 4 4 H 1.48506 * 109.47264 * 270.00165 * 3 2 1 5 5 H 1.48497 * 109.47487 * 29.99949 * 3 2 1 6 6 H 1.48502 * 109.47112 * 150.00028 * 3 2 1 7 7 C 1.38754 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00002 * 179.97438 * 7 2 1 9 9 O 1.34920 * 119.99976 * 359.97438 * 7 2 1 10 10 C 1.34318 * 117.00233 * 180.02562 * 9 7 2 11 11 O 1.21207 * 119.99503 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00221 * 180.02562 * 10 9 7 13 13 C 1.52999 * 109.47050 * 179.97438 * 12 10 9 14 14 C 1.50698 * 109.47050 * 179.97438 * 13 12 10 15 15 N 1.30970 * 126.44172 * 90.25122 * 14 13 12 16 16 C 1.35217 * 105.58317 * 180.12002 * 15 14 13 17 17 C 1.48423 * 126.41715 * 179.90703 * 16 15 14 18 18 C 1.39328 * 120.12073 * 179.71435 * 17 16 15 19 19 C 1.38010 * 119.88098 * 179.97438 * 18 17 16 20 20 C 1.38325 * 120.12036 * 359.97438 * 19 18 17 21 21 C 1.38323 * 120.23744 * 0.02562 * 20 19 18 22 22 C 1.38017 * 120.12365 * 359.97438 * 21 20 19 23 23 N 1.30766 * 107.16940 * 359.64499 * 16 15 14 24 24 O 1.21294 * 110.09849 * 0.22279 * 23 16 15 25 25 H 0.96998 * 120.00261 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46971 * 59.99519 * 12 10 9 27 27 H 1.08999 * 109.46909 * 299.99708 * 12 10 9 28 28 H 1.09002 * 109.46881 * 59.99678 * 13 12 10 29 29 H 1.08999 * 109.47074 * 299.99666 * 13 12 10 30 30 H 1.08000 * 120.05605 * 359.97438 * 18 17 16 31 31 H 1.08006 * 119.94346 * 180.02562 * 19 18 17 32 32 H 1.07994 * 119.87991 * 179.72368 * 20 19 18 33 33 H 1.08001 * 119.93386 * 180.02562 * 21 20 19 34 34 H 1.07994 * 120.06263 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4959 2.0464 -1.4001 5 1 1.4459 2.6527 0.7000 6 1 3.5459 1.4401 0.7000 7 6 2.0082 -1.2016 -0.0005 8 1 3.0881 -1.2016 -0.0010 9 8 1.3336 -2.3701 -0.0005 10 6 2.0651 -3.4966 -0.0005 11 8 3.2755 -3.4331 -0.0010 12 6 1.3809 -4.8393 -0.0011 13 6 2.4346 -5.9486 -0.0016 14 6 1.7505 -7.2913 -0.0016 15 7 1.4010 -7.9864 -1.0552 16 6 0.8232 -9.1101 -0.5737 17 6 0.2565 -10.2228 -1.3760 18 6 -0.3056 -11.3277 -0.7401 19 6 -0.8317 -12.3593 -1.4910 20 6 -0.8021 -12.2974 -2.8725 21 6 -0.2452 -11.2028 -3.5090 22 6 0.2837 -10.1656 -2.7678 23 7 0.8623 -9.0356 0.7313 24 8 1.3908 -7.9990 1.0739 25 1 -0.4850 0.8400 0.0004 26 1 0.7584 -4.9295 -0.8914 27 1 0.7578 -4.9300 0.8886 28 1 3.0575 -5.8585 0.8884 29 1 3.0573 -5.8578 -0.8916 30 1 -0.3296 -11.3768 0.3385 31 1 -1.2680 -13.2161 -0.9991 32 1 -1.2108 -13.1088 -3.4563 33 1 -0.2251 -11.1594 -4.5879 34 1 0.7185 -9.3116 -3.2657 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000026669481.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:14 Heat of formation + Delta-G solvation = -12.959467 kcal Electronic energy + Delta-G solvation = -20748.740691 eV Core-core repulsion = 17228.386718 eV Total energy + Delta-G solvation = -3520.353974 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.70507 -41.04062 -40.13674 -37.61455 -37.00938 -35.57697 -34.28507 -32.88621 -31.98250 -31.42684 -28.17158 -26.49341 -25.86737 -24.22569 -23.18226 -22.19906 -21.51204 -19.87743 -19.35762 -18.97484 -18.41015 -17.66989 -17.07422 -16.75892 -16.55266 -16.20038 -15.90496 -15.32819 -15.04031 -14.61557 -14.44346 -14.39334 -14.23450 -13.75225 -13.62020 -13.44411 -13.07367 -12.82671 -12.43119 -12.39087 -12.38283 -12.22977 -12.14834 -11.96997 -11.96521 -11.43857 -11.04521 -10.68348 -9.99124 -9.73096 -8.52399 -6.32023 -0.42242 0.19454 0.37188 1.32176 1.32306 1.37208 1.52907 1.58563 1.65666 2.13688 2.34352 2.73001 2.80741 2.92034 2.99614 3.65319 3.78051 3.94203 3.99664 4.01684 4.18103 4.31971 4.43623 4.48348 4.54442 4.63284 4.77644 4.78790 4.88785 4.92421 5.04332 5.20706 5.40357 5.44711 5.48669 5.84679 5.91731 6.67123 6.93333 6.95890 7.77033 8.68338 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.035470 B = 0.002572 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.202463 B =10885.467918 C =11184.400286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.006 4.006 3 Si 1.017 2.983 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.261 1.261 7 C -0.418 4.418 8 H 0.087 0.913 9 O -0.246 6.246 10 C 0.404 3.596 11 O -0.575 6.575 12 C -0.089 4.089 13 C -0.002 4.002 14 C 0.208 3.792 15 N -0.489 5.489 16 C 0.205 3.795 17 C -0.052 4.052 18 C -0.096 4.096 19 C -0.121 4.121 20 C -0.094 4.094 21 C -0.123 4.123 22 C -0.089 4.089 23 N -0.394 5.394 24 O 0.080 5.920 25 H 0.278 0.722 26 H 0.111 0.889 27 H 0.119 0.881 28 H 0.126 0.874 29 H 0.122 0.878 30 H 0.126 0.874 31 H 0.157 0.843 32 H 0.162 0.838 33 H 0.156 0.844 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.857 -22.734 -4.249 23.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.206 4.206 3 Si 0.836 3.164 4 H -0.186 1.186 5 H -0.187 1.187 6 H -0.186 1.186 7 C -0.494 4.494 8 H 0.104 0.896 9 O -0.154 6.154 10 C 0.251 3.749 11 O -0.473 6.473 12 C -0.128 4.128 13 C -0.041 4.041 14 C -0.013 4.013 15 N -0.223 5.223 16 C -0.064 4.064 17 C -0.054 4.054 18 C -0.116 4.116 19 C -0.139 4.139 20 C -0.113 4.113 21 C -0.140 4.140 22 C -0.109 4.109 23 N -0.102 5.102 24 O 0.022 5.978 25 H 0.087 0.913 26 H 0.130 0.870 27 H 0.137 0.863 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.144 0.856 31 H 0.175 0.825 32 H 0.179 0.821 33 H 0.173 0.827 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.075 -23.251 -4.119 23.704 hybrid contribution 0.448 1.125 0.258 1.238 sum -1.628 -22.127 -3.861 22.520 Atomic orbital electron populations 1.70079 1.07709 1.29342 1.47110 1.26542 0.96845 1.02457 0.94786 0.84624 0.77742 0.74587 0.79448 1.18584 1.18739 1.18552 1.21446 0.92281 0.81014 1.54638 0.89567 1.83890 1.40481 1.14313 1.76733 1.23938 0.86552 0.87940 0.76431 1.90548 1.16694 1.88587 1.51481 1.21030 0.98419 0.86119 1.07202 1.19955 0.95687 0.79864 1.08613 1.28770 0.94893 0.97541 0.80061 1.72024 1.16771 1.04387 1.29070 1.24396 0.99136 0.95195 0.87713 1.17615 1.03394 0.91607 0.92801 1.21313 0.96828 0.92759 1.00718 1.21451 0.99292 0.98623 0.94548 1.21794 0.96449 0.98326 0.94694 1.21487 0.97847 0.93154 1.01560 1.21358 0.97990 0.99796 0.91725 1.74847 1.17166 1.02878 1.15285 1.85276 1.54366 1.22398 1.35801 0.91276 0.87049 0.86267 0.85599 0.85955 0.85580 0.82520 0.82082 0.82677 0.85324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.07 13.67 21.62 0.30 -52.78 16 2 C -0.01 -0.35 5.49 84.87 0.47 0.12 16 3 Si 1.02 42.74 29.55 68.60 2.03 44.77 16 4 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 5 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 6 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.42 -24.70 9.65 67.94 0.66 -24.04 16 8 H 0.09 5.11 6.86 -2.91 -0.02 5.09 16 9 O -0.25 -13.96 9.75 14.81 0.14 -13.82 16 10 C 0.40 18.68 7.91 71.24 0.56 19.24 16 11 O -0.58 -28.70 15.22 20.78 0.32 -28.39 16 12 C -0.09 -2.85 5.79 29.85 0.17 -2.68 16 13 C 0.00 -0.06 5.13 29.85 0.15 0.09 16 14 C 0.21 5.68 7.75 88.36 0.68 6.37 16 15 N -0.49 -14.49 11.26 -302.48 -3.41 -17.89 16 16 C 0.21 5.95 7.80 137.30 1.07 7.02 16 17 C -0.05 -1.28 5.88 -20.04 -0.12 -1.40 16 18 C -0.10 -1.93 9.69 22.48 0.22 -1.71 16 19 C -0.12 -1.66 10.03 22.24 0.22 -1.44 16 20 C -0.09 -1.09 10.04 22.31 0.22 -0.87 16 21 C -0.12 -1.76 10.03 22.24 0.22 -1.54 16 22 C -0.09 -1.85 9.70 22.48 0.22 -1.63 16 23 N -0.39 -11.65 11.86 -59.10 -0.70 -12.35 16 24 O 0.08 2.26 11.29 74.56 0.84 3.10 16 25 H 0.28 14.81 8.31 -92.71 -0.77 14.04 16 26 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 27 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16 28 H 0.13 3.04 8.10 -2.39 -0.02 3.02 16 29 H 0.12 3.25 8.10 -2.39 -0.02 3.23 16 30 H 0.13 2.52 7.87 -2.91 -0.02 2.50 16 31 H 0.16 1.22 8.06 -2.91 -0.02 1.19 16 32 H 0.16 0.77 8.06 -2.91 -0.02 0.74 16 33 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 34 H 0.13 2.79 7.88 -2.91 -0.02 2.76 16 Total: -1.00 -73.81 316.38 5.41 -68.40 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 1.14 Total: 11.42 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 4.76 Total: -2.46 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -3.81 Total: -83.02 kcal Atomic # 8 Polarization: -40.40 SS G_CDS: 1.30 Total: -39.10 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -73.81 5.41 -68.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026669481.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.443 kcal (2) G-P(sol) polarization free energy of solvation -73.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds