Wall clock time and date at job start Tue Mar 31 2020 05:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31430 * 1 3 3 Si 1.86803 * 120.00190 * 2 1 4 4 H 1.48500 * 109.47041 * 239.99645 * 3 2 1 5 5 H 1.48503 * 109.46839 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47140 * 119.99355 * 3 2 1 7 7 C 1.38803 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00290 * 179.97438 * 7 2 1 9 9 O 1.34844 * 119.99677 * 0.02562 * 7 2 1 10 10 C 1.34889 * 116.99964 * 179.97438 * 9 7 2 11 11 O 1.21662 * 120.00250 * 0.02562 * 10 9 7 12 12 C 1.46404 * 120.00275 * 179.97438 * 10 9 7 13 13 O 1.34942 * 125.99887 * 0.03068 * 12 10 9 14 14 C 1.33932 * 109.37929 * 179.97438 * 13 12 10 15 15 C 1.35191 * 108.78638 * 0.24572 * 14 13 12 16 16 C 1.36707 * 126.00133 * 179.97438 * 12 10 9 17 17 C 1.50697 * 126.65213 * 0.04013 * 16 12 10 18 18 O 1.42897 * 109.47401 * 179.97438 * 17 16 12 19 19 C 1.35903 * 117.00168 * 179.97438 * 18 17 16 20 20 C 1.38728 * 120.05480 * 359.73186 * 19 18 17 21 21 C 1.38148 * 119.94546 * 179.74523 * 20 19 18 22 22 C 1.38260 * 120.05225 * 0.50555 * 21 20 19 23 23 C 1.38262 * 120.11279 * 359.76903 * 22 21 20 24 24 C 1.38141 * 120.05720 * 359.97438 * 23 22 21 25 25 H 0.96999 * 119.99682 * 0.02562 * 1 2 3 26 26 H 1.08002 * 125.60290 * 179.97438 * 14 13 12 27 27 H 1.07997 * 126.42902 * 179.76059 * 15 14 13 28 28 H 1.09001 * 109.47409 * 300.00100 * 17 16 12 29 29 H 1.09008 * 109.47181 * 59.99890 * 17 16 12 30 30 H 1.08004 * 120.02990 * 359.97438 * 20 19 18 31 31 H 1.08005 * 119.97194 * 180.27405 * 21 20 19 32 32 H 1.08007 * 119.94432 * 179.74979 * 22 21 20 33 33 H 1.08007 * 119.97631 * 179.97438 * 23 22 21 34 34 H 1.08002 * 120.03330 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.1022 1.6963 -1.2125 5 1 1.2833 2.7465 -0.0006 6 1 3.1020 1.6964 1.2126 7 6 2.0083 -1.2021 0.0005 8 1 3.0883 -1.2021 0.0001 9 8 1.3341 -2.3698 0.0005 10 6 2.0687 -3.5011 0.0005 11 8 3.2837 -3.4375 0.0010 12 6 1.4041 -4.8056 0.0011 13 8 0.0713 -5.0167 0.0011 14 6 -0.1700 -6.3341 0.0011 15 6 1.0105 -6.9929 0.0067 16 6 2.0247 -6.0237 0.0007 17 6 3.5103 -6.2763 0.0004 18 8 3.7541 -7.6844 0.0006 19 6 5.0525 -8.0858 -0.0002 20 6 6.0710 -7.1438 -0.0067 21 6 7.3900 -7.5544 -0.0022 22 6 7.6955 -8.9028 -0.0017 23 6 6.6823 -9.8436 -0.0009 24 6 5.3617 -9.4382 -0.0001 25 1 -0.4850 0.8401 -0.0004 26 1 -1.1471 -6.7944 0.0015 27 1 1.1470 -8.0642 0.0118 28 1 3.9546 -5.8304 -0.8895 29 1 3.9549 -5.8309 0.8905 30 1 5.8329 -6.0904 -0.0116 31 1 8.1832 -6.8214 -0.0028 32 1 8.7274 -9.2218 -0.0022 33 1 6.9234 -10.8964 -0.0010 34 1 4.5706 -10.1734 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028484149.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:27 Heat of formation + Delta-G solvation = -70.280215 kcal Electronic energy + Delta-G solvation = -21445.986032 eV Core-core repulsion = 17890.853693 eV Total energy + Delta-G solvation = -3555.132339 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.33784 -40.02217 -38.90332 -37.43277 -35.46050 -33.30508 -32.32801 -31.08788 -30.19046 -29.70866 -27.05383 -25.49372 -22.98954 -22.46477 -22.22901 -20.90986 -19.49852 -18.08956 -17.94584 -17.65865 -16.28284 -16.23944 -15.91781 -15.48241 -15.34553 -14.84457 -14.48909 -14.41306 -14.28491 -13.50312 -13.32613 -13.03918 -12.82122 -12.59931 -12.41291 -11.83245 -11.73942 -11.61915 -11.38904 -11.23306 -10.81919 -10.59918 -10.55165 -10.05452 -9.46766 -9.45264 -9.05810 -8.74573 -8.33771 -8.18099 -6.58642 -4.22128 1.28451 1.40298 1.43223 2.60340 2.99954 3.10467 3.11996 3.15842 3.29439 3.74675 3.77967 3.84484 4.42761 4.75563 4.82682 4.93845 5.00703 5.08274 5.15597 5.28755 5.34134 5.56284 5.56460 5.62942 5.69904 5.93416 5.95030 6.12072 6.28611 6.37228 6.47000 6.51460 6.62139 6.74706 7.20379 7.29065 7.45912 7.74054 8.45319 8.87502 9.61998 10.57667 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.019357 B = 0.003819 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.180372 B = 7330.076207 C = 8761.109380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.043 3.957 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.378 4.378 8 H 0.102 0.898 9 O -0.190 6.190 10 C 0.460 3.540 11 O -0.537 6.537 12 C 0.002 3.998 13 O -0.143 6.143 14 C -0.028 4.028 15 C -0.201 4.201 16 C -0.129 4.129 17 C 0.140 3.860 18 O -0.314 6.314 19 C 0.137 3.863 20 C -0.208 4.208 21 C -0.079 4.079 22 C -0.165 4.165 23 C -0.085 4.085 24 C -0.157 4.157 25 H 0.275 0.725 26 H 0.207 0.793 27 H 0.156 0.844 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.135 0.865 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.072 -15.813 -0.001 17.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.163 4.163 3 Si 0.774 3.226 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.453 4.453 8 H 0.120 0.880 9 O -0.095 6.095 10 C 0.308 3.692 11 O -0.438 6.438 12 C -0.050 4.050 13 O -0.037 6.037 14 C -0.098 4.098 15 C -0.220 4.220 16 C -0.131 4.131 17 C 0.066 3.934 18 O -0.227 6.227 19 C 0.091 3.909 20 C -0.226 4.226 21 C -0.097 4.097 22 C -0.184 4.184 23 C -0.103 4.103 24 C -0.175 4.175 25 H 0.085 0.915 26 H 0.224 0.776 27 H 0.174 0.826 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.153 0.847 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.144 0.856 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.755 -15.460 -0.001 16.872 hybrid contribution 0.413 0.745 -0.001 0.852 sum 7.167 -14.715 -0.002 16.368 Atomic orbital electron populations 1.70000 1.06216 1.28419 1.43737 1.25487 0.95904 0.99201 0.95735 0.85643 0.78663 0.78733 0.79601 1.19180 1.20149 1.19173 1.21369 0.92685 0.79456 1.51797 0.88037 1.83996 1.38961 1.13189 1.73383 1.18872 0.85108 0.83266 0.81913 1.90711 1.13388 1.86470 1.53186 1.20995 0.80314 0.93247 1.10405 1.84273 1.24066 1.25893 1.69438 1.24315 1.00447 0.80300 1.04739 1.21460 0.90869 1.00682 1.08953 1.19843 0.95137 0.91515 1.06632 1.20881 0.91181 0.78187 1.03180 1.85966 1.22637 1.25874 1.88232 1.19038 0.83036 0.93514 0.95296 1.21487 0.93281 1.00134 1.07743 1.20986 0.95741 0.96011 0.96995 1.21034 0.99211 0.93129 1.05000 1.20918 0.91781 0.99515 0.98088 1.20419 0.97115 0.92950 1.07040 0.91530 0.77599 0.82646 0.89893 0.89901 0.84730 0.85801 0.86158 0.85629 0.85365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.44 13.67 55.49 0.76 -23.68 16 2 C 0.04 1.19 5.50 -17.51 -0.10 1.09 16 3 Si 0.95 20.58 29.55 -169.99 -5.02 15.55 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.38 -10.96 9.65 30.94 0.30 -10.66 16 8 H 0.10 2.89 6.86 -52.49 -0.36 2.53 16 9 O -0.19 -5.53 9.75 -23.50 -0.23 -5.76 16 10 C 0.46 11.80 7.86 34.02 0.27 12.06 16 11 O -0.54 -13.96 14.77 -19.39 -0.29 -14.25 16 12 C 0.00 0.04 7.18 -36.85 -0.26 -0.22 16 13 O -0.14 -2.85 10.67 4.66 0.05 -2.80 16 14 C -0.03 -0.42 12.08 29.65 0.36 -0.06 16 15 C -0.20 -3.05 10.24 -39.89 -0.41 -3.46 16 16 C -0.13 -2.37 6.16 -104.41 -0.64 -3.02 16 17 C 0.14 2.38 3.95 36.00 0.14 2.52 16 18 O -0.31 -4.85 9.57 -19.44 -0.19 -5.04 16 19 C 0.14 1.93 6.69 -39.22 -0.26 1.67 16 20 C -0.21 -2.82 9.04 -39.43 -0.36 -3.18 16 21 C -0.08 -0.91 10.04 -39.61 -0.40 -1.31 16 22 C -0.17 -1.69 10.04 -39.56 -0.40 -2.09 16 23 C -0.08 -0.86 10.04 -39.61 -0.40 -1.26 16 24 C -0.16 -1.86 9.99 -39.44 -0.39 -2.26 16 25 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.21 1.96 8.06 -52.49 -0.42 1.54 16 27 H 0.16 1.97 7.98 -52.49 -0.42 1.55 16 28 H 0.08 1.44 7.56 -51.93 -0.39 1.04 16 29 H 0.08 1.44 7.59 -51.92 -0.39 1.04 16 30 H 0.13 1.88 6.30 -52.48 -0.33 1.55 16 31 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 32 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 33 H 0.13 0.92 8.06 -52.48 -0.42 0.49 16 34 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 312.65 15.07 4.71 4.71 Total: -1.00 -32.56 312.65 -5.90 -38.46 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -3.15 Total: 2.97 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -2.55 Total: -10.16 kcal Atomic # 7 Polarization: -24.44 SS G_CDS: 0.76 Total: -23.68 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.65 Total: -27.85 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.56 -5.90 -38.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028484149.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.819 kcal (2) G-P(sol) polarization free energy of solvation -32.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds