Wall clock time and date at job start Tue Mar 31 2020 05:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31430 * 1 3 3 Si 1.86803 * 120.00190 * 2 1 4 4 H 1.48500 * 109.47041 * 239.99645 * 3 2 1 5 5 H 1.48503 * 109.46839 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47140 * 119.99355 * 3 2 1 7 7 C 1.38803 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00290 * 179.97438 * 7 2 1 9 9 O 1.34844 * 119.99677 * 0.02562 * 7 2 1 10 10 C 1.34889 * 116.99964 * 179.97438 * 9 7 2 11 11 O 1.21662 * 120.00250 * 0.02562 * 10 9 7 12 12 C 1.46404 * 120.00275 * 179.97438 * 10 9 7 13 13 O 1.34942 * 125.99887 * 0.03068 * 12 10 9 14 14 C 1.33932 * 109.37929 * 179.97438 * 13 12 10 15 15 C 1.35191 * 108.78638 * 0.24572 * 14 13 12 16 16 C 1.36707 * 126.00133 * 179.97438 * 12 10 9 17 17 C 1.50697 * 126.65213 * 0.04013 * 16 12 10 18 18 O 1.42897 * 109.47401 * 179.97438 * 17 16 12 19 19 C 1.35903 * 117.00168 * 179.97438 * 18 17 16 20 20 C 1.38728 * 120.05480 * 359.73186 * 19 18 17 21 21 C 1.38148 * 119.94546 * 179.74523 * 20 19 18 22 22 C 1.38260 * 120.05225 * 0.50555 * 21 20 19 23 23 C 1.38262 * 120.11279 * 359.76903 * 22 21 20 24 24 C 1.38141 * 120.05720 * 359.97438 * 23 22 21 25 25 H 0.96999 * 119.99682 * 0.02562 * 1 2 3 26 26 H 1.08002 * 125.60290 * 179.97438 * 14 13 12 27 27 H 1.07997 * 126.42902 * 179.76059 * 15 14 13 28 28 H 1.09001 * 109.47409 * 300.00100 * 17 16 12 29 29 H 1.09008 * 109.47181 * 59.99890 * 17 16 12 30 30 H 1.08004 * 120.02990 * 359.97438 * 20 19 18 31 31 H 1.08005 * 119.97194 * 180.27405 * 21 20 19 32 32 H 1.08007 * 119.94432 * 179.74979 * 22 21 20 33 33 H 1.08007 * 119.97631 * 179.97438 * 23 22 21 34 34 H 1.08002 * 120.03330 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.1022 1.6963 -1.2125 5 1 1.2833 2.7465 -0.0006 6 1 3.1020 1.6964 1.2126 7 6 2.0083 -1.2021 0.0005 8 1 3.0883 -1.2021 0.0001 9 8 1.3341 -2.3698 0.0005 10 6 2.0687 -3.5011 0.0005 11 8 3.2837 -3.4375 0.0010 12 6 1.4041 -4.8056 0.0011 13 8 0.0713 -5.0167 0.0011 14 6 -0.1700 -6.3341 0.0011 15 6 1.0105 -6.9929 0.0067 16 6 2.0247 -6.0237 0.0007 17 6 3.5103 -6.2763 0.0004 18 8 3.7541 -7.6844 0.0006 19 6 5.0525 -8.0858 -0.0002 20 6 6.0710 -7.1438 -0.0067 21 6 7.3900 -7.5544 -0.0022 22 6 7.6955 -8.9028 -0.0017 23 6 6.6823 -9.8436 -0.0009 24 6 5.3617 -9.4382 -0.0001 25 1 -0.4850 0.8401 -0.0004 26 1 -1.1471 -6.7944 0.0015 27 1 1.1470 -8.0642 0.0118 28 1 3.9546 -5.8304 -0.8895 29 1 3.9549 -5.8309 0.8905 30 1 5.8329 -6.0904 -0.0116 31 1 8.1832 -6.8214 -0.0028 32 1 8.7274 -9.2218 -0.0022 33 1 6.9234 -10.8964 -0.0010 34 1 4.5706 -10.1734 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028484149.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:27 Heat of formation + Delta-G solvation = -90.167841 kcal Electronic energy + Delta-G solvation = -21446.848425 eV Core-core repulsion = 17890.853693 eV Total energy + Delta-G solvation = -3555.994731 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.80582 -41.08156 -40.93693 -38.48212 -37.48735 -34.76225 -34.39986 -32.02679 -31.51974 -30.80812 -28.56553 -27.40871 -24.53617 -23.56785 -23.30520 -22.25776 -21.08076 -20.02863 -19.40844 -19.11999 -17.79517 -17.76656 -16.95814 -16.84283 -16.77133 -16.31928 -16.25994 -16.23444 -15.36663 -14.79757 -14.48637 -14.36886 -14.20235 -13.92950 -13.74265 -13.62587 -13.28610 -13.03927 -12.50131 -12.48055 -12.37217 -12.22987 -12.14887 -11.80984 -11.47471 -10.84610 -10.78162 -9.96283 -9.78024 -9.20970 -8.63924 -6.42586 -0.17382 0.38252 0.47249 1.28507 1.30696 1.42211 1.48073 1.61898 1.89959 1.99973 2.12653 2.70490 2.83893 2.91495 3.53145 3.82252 3.86025 3.99347 4.10298 4.13164 4.27829 4.32771 4.41152 4.49956 4.55222 4.70199 4.79710 4.92280 5.06429 5.09038 5.33108 5.36115 5.48693 5.59295 5.67669 5.81439 5.88319 6.33974 6.39408 6.78417 7.55329 8.56274 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.019357 B = 0.003819 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.180372 B = 7330.076207 C = 8761.109380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.003 4.003 3 Si 1.025 2.975 4 H -0.258 1.258 5 H -0.258 1.258 6 H -0.258 1.258 7 C -0.423 4.423 8 H 0.093 0.907 9 O -0.227 6.227 10 C 0.465 3.535 11 O -0.552 6.552 12 C -0.061 4.061 13 O -0.167 6.167 14 C 0.012 3.988 15 C -0.207 4.207 16 C -0.104 4.104 17 C 0.147 3.853 18 O -0.314 6.314 19 C 0.104 3.896 20 C -0.230 4.230 21 C -0.089 4.089 22 C -0.159 4.159 23 C -0.080 4.080 24 C -0.159 4.159 25 H 0.283 0.717 26 H 0.267 0.733 27 H 0.190 0.810 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.139 0.861 32 H 0.152 0.848 33 H 0.162 0.838 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.775 -18.489 0.001 20.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.205 4.205 3 Si 0.843 3.157 4 H -0.182 1.182 5 H -0.182 1.182 6 H -0.182 1.182 7 C -0.498 4.498 8 H 0.111 0.889 9 O -0.135 6.135 10 C 0.315 3.685 11 O -0.452 6.452 12 C -0.111 4.111 13 O -0.062 6.062 14 C -0.057 4.057 15 C -0.225 4.225 16 C -0.106 4.106 17 C 0.073 3.927 18 O -0.228 6.228 19 C 0.059 3.941 20 C -0.249 4.249 21 C -0.107 4.107 22 C -0.177 4.177 23 C -0.097 4.097 24 C -0.178 4.178 25 H 0.093 0.907 26 H 0.282 0.718 27 H 0.207 0.793 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.134 0.866 31 H 0.157 0.843 32 H 0.170 0.830 33 H 0.180 0.820 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.474 -18.168 0.002 19.645 hybrid contribution 0.249 1.158 -0.002 1.184 sum 7.723 -17.010 -0.001 18.681 Atomic orbital electron populations 1.70089 1.07977 1.29997 1.45069 1.26757 0.96952 1.02647 0.94108 0.84588 0.77582 0.73459 0.80105 1.18208 1.18181 1.18200 1.21637 0.92694 0.80501 1.54977 0.88948 1.84019 1.39941 1.14111 1.75402 1.19597 0.85352 0.84113 0.79415 1.90660 1.14154 1.87224 1.53207 1.20406 0.81661 0.92060 1.17008 1.84246 1.23120 1.28805 1.70057 1.25588 1.02756 0.78119 0.99242 1.21860 0.89758 1.01747 1.09174 1.20216 0.96359 0.91271 1.02746 1.20606 0.90416 0.79581 1.02145 1.85917 1.23903 1.24046 1.88972 1.19389 0.82346 0.94740 0.97595 1.21510 0.94614 0.99376 1.09354 1.21267 0.95118 0.97522 0.96808 1.21464 1.00997 0.92325 1.02907 1.21383 0.90780 1.01394 0.96179 1.20741 0.98648 0.92003 1.06394 0.90734 0.71782 0.79268 0.90996 0.91005 0.86622 0.84283 0.83027 0.82011 0.83759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.60 13.67 21.63 0.30 -53.30 16 2 C 0.00 -0.18 5.50 84.89 0.47 0.29 16 3 Si 1.03 43.05 29.55 68.60 2.03 45.08 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 5 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 6 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 7 C -0.42 -26.11 9.65 67.96 0.66 -25.45 16 8 H 0.09 5.63 6.86 -2.91 -0.02 5.61 16 9 O -0.23 -14.20 9.75 11.22 0.11 -14.09 16 10 C 0.47 25.55 7.86 69.95 0.55 26.10 16 11 O -0.55 -30.78 14.77 19.31 0.29 -30.49 16 12 C -0.06 -2.74 7.18 24.04 0.17 -2.57 16 13 O -0.17 -6.68 10.67 -5.11 -0.05 -6.74 16 14 C 0.01 0.31 12.08 67.12 0.81 1.12 16 15 C -0.21 -5.74 10.24 22.07 0.23 -5.52 16 16 C -0.10 -3.83 6.16 -19.72 -0.12 -3.95 16 17 C 0.15 5.20 3.95 71.23 0.28 5.49 16 18 O -0.31 -9.66 9.57 -92.46 -0.88 -10.55 16 19 C 0.10 2.90 6.69 22.50 0.15 3.05 16 20 C -0.23 -6.40 9.04 22.37 0.20 -6.20 16 21 C -0.09 -1.96 10.04 22.25 0.22 -1.74 16 22 C -0.16 -2.76 10.04 22.28 0.22 -2.54 16 23 C -0.08 -1.33 10.04 22.25 0.22 -1.11 16 24 C -0.16 -3.44 9.99 22.36 0.22 -3.22 16 25 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 26 H 0.27 3.50 8.06 -2.91 -0.02 3.47 16 27 H 0.19 3.98 7.98 -2.91 -0.02 3.96 16 28 H 0.07 2.68 7.56 -2.39 -0.02 2.66 16 29 H 0.07 2.68 7.59 -2.38 -0.02 2.66 16 30 H 0.12 3.54 6.30 -2.91 -0.02 3.53 16 31 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 32 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 33 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 34 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -77.50 312.65 7.20 -70.30 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 1.14 Total: 16.05 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: 4.29 Total: -16.25 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 0.30 Total: -53.30 kcal Atomic # 8 Polarization: -61.33 SS G_CDS: -0.54 Total: -61.87 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -77.50 7.20 -70.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028484149.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.872 kcal (2) G-P(sol) polarization free energy of solvation -77.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds