Wall clock time and date at job start Tue Mar 31 2020 05:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33445 * 125.96657 * 2 1 4 4 N 1.31981 * 114.56653 * 180.02562 * 3 2 1 5 5 C 1.29646 * 116.91474 * 359.97438 * 4 3 2 6 6 N 1.38905 * 124.94211 * 180.02562 * 5 4 3 7 7 C 1.34771 * 120.00086 * 359.97390 * 6 5 4 8 8 O 1.21554 * 120.00429 * 0.02562 * 7 6 5 9 9 C 1.47841 * 119.99830 * 179.97438 * 7 6 5 10 10 C 1.39943 * 120.02593 * 359.72401 * 9 7 6 11 11 C 1.38321 * 120.35240 * 179.76136 * 10 9 7 12 12 C 1.37757 * 120.41507 * 0.51961 * 11 10 9 13 13 C 1.40753 * 120.04464 * 359.73877 * 12 11 10 14 14 C 1.41442 * 120.17323 * 180.02562 * 13 12 11 15 15 H 1.07989 * 120.00078 * 24.43148 * 14 13 12 16 16 C 1.39935 * 119.99584 * 204.43254 * 14 13 12 17 17 N 1.30839 * 119.99874 * 17.89227 * 16 14 13 18 18 Si 1.86799 * 120.00278 * 197.88914 * 16 14 13 19 19 H 1.48508 * 109.46701 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46983 * 119.99741 * 18 16 14 21 21 H 1.48497 * 109.47533 * 240.00350 * 18 16 14 22 22 C 1.39014 * 120.02599 * 180.02562 * 9 7 6 23 23 S 1.70964 * 110.10956 * 359.97438 * 5 4 3 24 24 H 1.09001 * 109.47474 * 90.00510 * 1 2 3 25 25 H 1.09001 * 109.47458 * 210.00700 * 1 2 3 26 26 H 1.09001 * 109.47102 * 330.00523 * 1 2 3 27 27 H 1.08000 * 122.71664 * 359.74341 * 3 2 1 28 28 H 0.97001 * 119.99421 * 179.97438 * 6 5 4 29 29 H 1.07999 * 119.82003 * 0.02562 * 10 9 7 30 30 H 1.08005 * 119.78988 * 180.25259 * 11 10 9 31 31 H 1.08002 * 119.97481 * 179.76138 * 12 11 10 32 32 H 0.96999 * 119.99391 * 179.97438 * 17 16 14 33 33 H 1.07998 * 120.20608 * 359.95446 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2908 1.0801 0.0000 4 7 3.5845 0.8192 -0.0005 5 6 3.9313 -0.4300 -0.0005 6 7 5.2413 -0.8921 -0.0005 7 6 6.2650 -0.0155 -0.0011 8 8 6.0421 1.1794 -0.0011 9 6 7.6592 -0.5073 -0.0005 10 6 7.9165 -1.8829 0.0065 11 6 9.2183 -2.3504 0.0021 12 6 10.2763 -1.4681 0.0016 13 6 10.0371 -0.0811 -0.0001 14 6 11.1213 0.8272 -0.0012 15 1 12.0820 0.5209 -0.3876 16 6 10.9490 2.1229 0.4986 17 7 9.9299 2.3954 1.2726 18 14 12.1740 3.4635 0.0608 19 1 13.2275 2.9020 -0.8225 20 1 11.4713 4.5646 -0.6456 21 1 12.7967 3.9896 1.3020 22 6 8.7156 0.3963 -0.0006 23 16 2.5416 -1.4258 0.0010 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.8982 2.0862 -0.0041 28 1 5.4192 -1.8456 0.0000 29 1 7.0943 -2.5830 0.0111 30 1 9.4065 -3.4140 0.0035 31 1 11.2899 -1.8410 0.0020 32 1 9.8107 3.2934 1.6193 33 1 8.5218 1.4588 -0.0018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042218456.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:41 Heat of formation + Delta-G solvation = 33.981327 kcal Electronic energy + Delta-G solvation = -19154.596769 eV Core-core repulsion = 16079.031171 eV Total energy + Delta-G solvation = -3075.565597 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.20216 -38.76149 -37.08730 -34.70439 -33.78124 -32.08565 -30.25201 -29.52692 -26.68635 -25.39441 -24.51309 -22.71634 -21.07765 -20.66292 -19.17191 -18.50461 -17.31833 -16.55239 -15.76734 -15.31639 -15.20670 -14.77934 -14.51103 -14.00687 -13.97207 -13.34139 -13.07215 -12.92363 -12.83818 -12.72669 -12.59956 -11.73154 -11.24817 -11.23683 -11.14481 -10.83541 -10.56418 -10.41186 -10.18073 -9.79178 -9.67553 -9.27872 -9.17637 -8.88468 -8.03884 -7.71737 -7.61250 -6.86717 -4.48259 0.81883 1.04741 1.68072 2.09200 2.73774 3.02595 3.05460 3.10307 3.11693 3.20706 3.80095 3.88094 4.55762 4.67781 4.93514 5.07360 5.35765 5.48874 5.51543 5.65529 5.79198 5.95754 6.06727 6.16426 6.49464 6.63439 6.87905 6.91331 7.12799 7.27747 7.32038 7.61054 7.71856 7.87185 8.05321 8.11426 8.41885 8.67577 8.73901 8.75606 10.07903 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.025664 B = 0.003880 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.763645 B = 7215.422691 C = 8220.356070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.258 4.258 3 C 0.071 3.929 4 N -0.481 5.481 5 C 0.291 3.709 6 N -0.636 5.636 7 C 0.557 3.443 8 O -0.473 6.473 9 C -0.125 4.125 10 C -0.223 4.223 11 C -0.093 4.093 12 C -0.211 4.211 13 C 0.099 3.901 14 C -0.456 4.456 15 H 0.083 0.917 16 C 0.072 3.928 17 N -0.780 5.780 18 Si 0.911 3.089 19 H -0.259 1.259 20 H -0.270 1.270 21 H -0.273 1.273 22 C -0.088 4.088 23 S 0.095 5.905 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.175 0.825 28 H 0.421 0.579 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.286 0.714 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.459 -6.144 -1.664 14.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.380 4.380 3 C -0.080 4.080 4 N -0.202 5.202 5 C -0.078 4.078 6 N -0.289 5.289 7 C 0.345 3.655 8 O -0.342 6.342 9 C -0.129 4.129 10 C -0.244 4.244 11 C -0.111 4.111 12 C -0.231 4.231 13 C 0.097 3.903 14 C -0.485 4.485 15 H 0.101 0.899 16 C -0.147 4.147 17 N -0.404 5.404 18 Si 0.735 3.265 19 H -0.183 1.183 20 H -0.195 1.195 21 H -0.198 1.198 22 C -0.108 4.108 23 S 0.345 5.655 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.192 0.808 28 H 0.260 0.740 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.317 -5.731 -1.511 14.576 hybrid contribution 0.306 0.903 -0.028 0.954 sum -13.011 -4.827 -1.539 13.963 Atomic orbital electron populations 1.20099 0.86889 1.02958 1.02458 1.25554 1.00998 0.93756 1.17708 1.21612 0.86254 0.99947 1.00217 1.66622 1.17040 1.15961 1.20534 1.23786 0.91212 0.91719 1.01084 1.43452 1.00830 1.11638 1.72934 1.19222 0.85066 0.85746 0.75448 1.90826 1.84405 1.15068 1.43919 1.19301 0.89781 0.94496 1.09324 1.20296 0.95845 0.92753 1.15463 1.20425 0.92738 0.97485 1.00480 1.21120 0.97007 0.93405 1.11534 1.17598 0.92419 0.91570 0.88744 1.19647 0.97769 0.95501 1.35564 0.89853 1.26001 0.96199 0.99927 0.92619 1.69790 1.26832 1.22581 1.21210 0.86209 0.80686 0.80234 0.79370 1.18274 1.19476 1.19844 1.21648 0.90725 0.99552 0.98868 1.83748 0.97460 1.10919 1.73401 0.91079 0.91528 0.90476 0.80828 0.74036 0.89330 0.88662 0.88417 0.90311 0.84678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.51 10.41 36.01 0.37 -0.13 16 2 C -0.26 -3.09 6.58 -35.98 -0.24 -3.33 16 3 C 0.07 1.04 11.24 -19.16 -0.22 0.82 16 4 N -0.48 -9.14 8.64 -15.14 -0.13 -9.27 16 5 C 0.29 4.99 8.01 -87.42 -0.70 4.29 16 6 N -0.64 -11.27 5.35 -13.95 -0.07 -11.34 16 7 C 0.56 12.48 7.73 -12.33 -0.10 12.38 16 8 O -0.47 -12.30 14.96 5.32 0.08 -12.23 16 9 C -0.13 -2.91 5.87 -105.04 -0.62 -3.53 16 10 C -0.22 -4.54 9.55 -38.91 -0.37 -4.91 16 11 C -0.09 -1.91 10.01 -39.73 -0.40 -2.31 16 12 C -0.21 -4.86 9.78 -38.81 -0.38 -5.24 16 13 C 0.10 2.57 5.57 -106.87 -0.60 1.98 16 14 C -0.46 -11.77 9.05 -37.73 -0.34 -12.11 16 15 H 0.08 2.04 7.91 -52.49 -0.42 1.62 16 16 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 17 N -0.78 -20.49 10.96 55.55 0.61 -19.88 16 18 Si 0.91 18.58 29.60 -169.99 -5.03 13.55 16 19 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 C -0.09 -2.31 8.24 -38.44 -0.32 -2.63 16 23 S 0.09 1.17 23.22 -107.50 -2.50 -1.33 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.17 2.08 8.06 -52.49 -0.42 1.66 16 28 H 0.42 5.96 6.84 -40.82 -0.28 5.69 16 29 H 0.09 1.44 6.38 -52.49 -0.33 1.10 16 30 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 31 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 32 H 0.29 6.90 8.30 -40.82 -0.34 6.56 16 33 H 0.14 3.86 5.74 -52.49 -0.30 3.56 16 LS Contribution 304.99 15.07 4.60 4.60 Total: -1.00 -31.14 304.99 -9.43 -40.57 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -3.00 Total: 8.34 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -3.98 Total: -13.00 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.40 Total: -40.50 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.08 Total: -12.23 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.50 Total: -1.33 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.14 -9.43 -40.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042218456.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.547 kcal (2) G-P(sol) polarization free energy of solvation -31.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds