Wall clock time and date at job start Tue Mar 31 2020 05:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33445 * 125.96657 * 2 1 4 4 N 1.31981 * 114.56653 * 180.02562 * 3 2 1 5 5 C 1.29646 * 116.91474 * 359.97438 * 4 3 2 6 6 N 1.38905 * 124.94211 * 180.02562 * 5 4 3 7 7 C 1.34771 * 120.00086 * 359.97390 * 6 5 4 8 8 O 1.21554 * 120.00429 * 0.02562 * 7 6 5 9 9 C 1.47841 * 119.99830 * 179.97438 * 7 6 5 10 10 C 1.39943 * 120.02593 * 359.72401 * 9 7 6 11 11 C 1.38321 * 120.35240 * 179.76136 * 10 9 7 12 12 C 1.37757 * 120.41507 * 0.51961 * 11 10 9 13 13 C 1.40753 * 120.04464 * 359.73877 * 12 11 10 14 14 C 1.41442 * 120.17323 * 180.02562 * 13 12 11 15 15 H 1.07989 * 120.00078 * 24.43148 * 14 13 12 16 16 C 1.39935 * 119.99584 * 204.43254 * 14 13 12 17 17 N 1.30839 * 119.99874 * 17.89227 * 16 14 13 18 18 Si 1.86799 * 120.00278 * 197.88914 * 16 14 13 19 19 H 1.48508 * 109.46701 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46983 * 119.99741 * 18 16 14 21 21 H 1.48497 * 109.47533 * 240.00350 * 18 16 14 22 22 C 1.39014 * 120.02599 * 180.02562 * 9 7 6 23 23 S 1.70964 * 110.10956 * 359.97438 * 5 4 3 24 24 H 1.09001 * 109.47474 * 90.00510 * 1 2 3 25 25 H 1.09001 * 109.47458 * 210.00700 * 1 2 3 26 26 H 1.09001 * 109.47102 * 330.00523 * 1 2 3 27 27 H 1.08000 * 122.71664 * 359.74341 * 3 2 1 28 28 H 0.97001 * 119.99421 * 179.97438 * 6 5 4 29 29 H 1.07999 * 119.82003 * 0.02562 * 10 9 7 30 30 H 1.08005 * 119.78988 * 180.25259 * 11 10 9 31 31 H 1.08002 * 119.97481 * 179.76138 * 12 11 10 32 32 H 0.96999 * 119.99391 * 179.97438 * 17 16 14 33 33 H 1.07998 * 120.20608 * 359.95446 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2908 1.0801 0.0000 4 7 3.5845 0.8192 -0.0005 5 6 3.9313 -0.4300 -0.0005 6 7 5.2413 -0.8921 -0.0005 7 6 6.2650 -0.0155 -0.0011 8 8 6.0421 1.1794 -0.0011 9 6 7.6592 -0.5073 -0.0005 10 6 7.9165 -1.8829 0.0065 11 6 9.2183 -2.3504 0.0021 12 6 10.2763 -1.4681 0.0016 13 6 10.0371 -0.0811 -0.0001 14 6 11.1213 0.8272 -0.0012 15 1 12.0820 0.5209 -0.3876 16 6 10.9490 2.1229 0.4986 17 7 9.9299 2.3954 1.2726 18 14 12.1740 3.4635 0.0608 19 1 13.2275 2.9020 -0.8225 20 1 11.4713 4.5646 -0.6456 21 1 12.7967 3.9896 1.3020 22 6 8.7156 0.3963 -0.0006 23 16 2.5416 -1.4258 0.0010 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.8982 2.0862 -0.0041 28 1 5.4192 -1.8456 0.0000 29 1 7.0943 -2.5830 0.0111 30 1 9.4065 -3.4140 0.0035 31 1 11.2899 -1.8410 0.0020 32 1 9.8107 3.2934 1.6193 33 1 8.5218 1.4588 -0.0018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042218456.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:40 Heat of formation + Delta-G solvation = 14.815444 kcal Electronic energy + Delta-G solvation = -19155.427864 eV Core-core repulsion = 16079.031171 eV Total energy + Delta-G solvation = -3076.396692 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.63572 -40.19887 -38.82466 -36.22515 -35.57015 -33.15380 -31.95898 -31.31688 -27.90910 -27.12845 -25.79605 -24.14136 -22.86026 -22.15640 -20.49779 -20.08253 -18.86994 -17.89460 -17.34707 -16.93308 -16.69614 -16.46598 -15.84119 -15.42016 -15.29769 -15.10863 -14.57031 -14.32473 -13.98399 -13.84748 -13.56314 -13.50409 -13.00371 -12.81928 -12.58833 -12.20896 -12.15160 -11.98591 -11.78635 -11.54728 -11.23785 -11.10573 -10.29754 -10.21165 -9.61088 -9.43684 -9.13714 -8.69711 -6.41011 -0.36648 -0.07233 0.36772 0.61827 0.97139 1.35451 1.44791 1.51957 1.77281 1.90640 2.14985 2.18644 2.74710 3.39758 3.65599 3.98958 4.10462 4.29092 4.38360 4.53345 4.80171 4.81068 4.87865 4.94150 5.04140 5.11764 5.15964 5.26513 5.34491 5.46187 5.76424 5.85822 5.99556 6.07083 6.26206 6.55426 6.82352 6.85765 6.90702 7.15420 8.26988 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.025664 B = 0.003880 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.763645 B = 7215.422691 C = 8220.356070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.232 4.232 3 C 0.031 3.969 4 N -0.530 5.530 5 C 0.235 3.765 6 N -0.622 5.622 7 C 0.557 3.443 8 O -0.525 6.525 9 C -0.136 4.136 10 C -0.198 4.198 11 C -0.091 4.091 12 C -0.213 4.213 13 C 0.068 3.932 14 C -0.494 4.494 15 H 0.087 0.913 16 C 0.028 3.972 17 N -0.825 5.825 18 Si 0.983 3.017 19 H -0.249 1.249 20 H -0.273 1.273 21 H -0.264 1.264 22 C -0.128 4.128 23 S 0.187 5.813 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.188 0.812 28 H 0.436 0.564 29 H 0.140 0.860 30 H 0.144 0.856 31 H 0.112 0.888 32 H 0.286 0.714 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.649 -9.180 -1.998 18.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.354 4.354 3 C -0.118 4.118 4 N -0.252 5.252 5 C -0.132 4.132 6 N -0.276 5.276 7 C 0.345 3.655 8 O -0.398 6.398 9 C -0.139 4.139 10 C -0.218 4.218 11 C -0.109 4.109 12 C -0.233 4.233 13 C 0.066 3.934 14 C -0.523 4.523 15 H 0.105 0.895 16 C -0.187 4.187 17 N -0.451 5.451 18 Si 0.803 3.197 19 H -0.172 1.172 20 H -0.198 1.198 21 H -0.188 1.188 22 C -0.148 4.148 23 S 0.438 5.562 24 H 0.108 0.892 25 H 0.104 0.896 26 H 0.111 0.889 27 H 0.205 0.795 28 H 0.278 0.722 29 H 0.157 0.843 30 H 0.162 0.838 31 H 0.130 0.870 32 H 0.097 0.903 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.542 -8.839 -1.847 17.975 hybrid contribution 0.640 1.594 0.057 1.719 sum -14.902 -7.245 -1.789 16.666 Atomic orbital electron populations 1.20354 0.83485 1.04726 1.04153 1.26297 1.03125 0.93191 1.12825 1.21847 0.85337 1.01659 1.03002 1.66525 1.19828 1.18313 1.20568 1.23965 0.91961 0.93007 1.04281 1.42930 1.00729 1.11526 1.72379 1.19109 0.85804 0.85567 0.74986 1.90792 1.85236 1.17270 1.46547 1.19570 0.89875 0.95718 1.08786 1.20866 0.97685 0.91949 1.11306 1.20944 0.91840 0.99569 0.98531 1.21460 0.98842 0.92622 1.10335 1.17937 0.92388 0.93289 0.89829 1.19910 0.98154 0.96851 1.37402 0.89506 1.26885 0.97905 1.01973 0.91908 1.69899 1.29134 1.22980 1.23040 0.85145 0.78288 0.76901 0.79338 1.17199 1.19772 1.18826 1.21429 0.92256 0.98519 1.02631 1.83350 0.93482 1.08472 1.70936 0.89204 0.89639 0.88850 0.79541 0.72189 0.84267 0.83802 0.86978 0.90334 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.41 71.24 0.74 -0.03 16 2 C -0.23 -4.87 6.58 24.60 0.16 -4.71 16 3 C 0.03 0.89 11.24 83.58 0.94 1.83 16 4 N -0.53 -20.58 8.64 -201.83 -1.74 -22.33 16 5 C 0.23 7.90 8.01 179.23 1.44 9.33 16 6 N -0.62 -21.69 5.35 -316.31 -1.69 -23.38 16 7 C 0.56 25.85 7.73 86.79 0.67 26.52 16 8 O -0.52 -29.27 14.96 -3.89 -0.06 -29.33 16 9 C -0.14 -6.45 5.87 -20.14 -0.12 -6.57 16 10 C -0.20 -7.56 9.55 22.70 0.22 -7.34 16 11 C -0.09 -3.46 10.01 22.18 0.22 -3.24 16 12 C -0.21 -9.71 9.78 22.77 0.22 -9.48 16 13 C 0.07 3.67 5.57 -21.32 -0.12 3.55 16 14 C -0.49 -26.83 9.05 23.47 0.21 -26.62 16 15 H 0.09 4.43 7.91 -2.92 -0.02 4.40 16 16 C 0.03 1.49 5.14 85.25 0.44 1.93 16 17 N -0.83 -46.69 10.96 21.83 0.24 -46.45 16 18 Si 0.98 40.02 29.60 68.60 2.03 42.05 16 19 H -0.25 -9.57 7.11 99.48 0.71 -8.87 16 20 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 21 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 22 C -0.13 -7.14 8.24 23.01 0.19 -6.95 16 23 S 0.19 4.00 23.22 -56.49 -1.31 2.69 16 24 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.19 4.46 8.06 -2.91 -0.02 4.44 16 28 H 0.44 11.29 6.84 -92.71 -0.63 10.66 16 29 H 0.14 3.84 6.38 -2.91 -0.02 3.82 16 30 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 31 H 0.11 4.68 8.06 -2.91 -0.02 4.65 16 32 H 0.29 14.98 8.30 -92.71 -0.77 14.21 16 33 H 0.10 6.13 5.74 -2.91 -0.02 6.12 16 Total: -1.00 -75.72 304.99 3.21 -72.52 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 0.53 Total: 26.00 kcal Atomic # 6 Polarization: -26.98 SS G_CDS: 5.22 Total: -21.77 kcal Atomic # 7 Polarization: -88.96 SS G_CDS: -3.20 Total: -92.16 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.06 Total: -29.33 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Atomic # 16 Polarization: 4.00 SS G_CDS: -1.31 Total: 2.69 kcal Total: -75.72 3.21 -72.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042218456.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.331 kcal (2) G-P(sol) polarization free energy of solvation -75.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds