Wall clock time and date at job start Tue Mar 31 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30949 * 123.03259 * 2 1 4 4 C 1.29373 * 117.46280 * 180.02562 * 3 2 1 5 5 S 1.70925 * 110.58212 * 359.76529 * 4 3 2 6 6 C 1.36705 * 123.03192 * 180.02562 * 2 1 3 7 7 C 1.46620 * 126.17459 * 359.95453 * 6 2 1 8 8 O 1.21696 * 120.00373 * 0.02562 * 7 6 2 9 9 N 1.34781 * 119.99839 * 180.02562 * 7 6 2 10 10 C 1.39104 * 119.99934 * 184.28825 * 9 7 6 11 11 C 1.39521 * 119.83886 * 144.68404 * 10 9 7 12 12 C 1.36356 * 120.16557 * 180.29622 * 11 10 9 13 13 C 1.40880 * 119.83047 * 359.45349 * 12 11 10 14 14 C 1.41135 * 120.16025 * 180.27460 * 13 12 11 15 15 H 1.07998 * 120.00132 * 35.05378 * 14 13 12 16 16 C 1.39912 * 119.99687 * 215.05524 * 14 13 12 17 17 N 1.30869 * 120.00018 * 355.56046 * 16 14 13 18 18 Si 1.86805 * 119.99475 * 175.56181 * 16 14 13 19 19 H 1.48502 * 109.47247 * 60.00235 * 18 16 14 20 20 H 1.48503 * 109.46753 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47147 * 300.00029 * 18 16 14 22 22 C 1.40882 * 119.68079 * 0.54193 * 13 12 11 23 23 C 1.36362 * 119.83108 * 359.73176 * 22 13 12 24 24 H 1.08996 * 109.46728 * 269.99429 * 1 2 3 25 25 H 1.08997 * 109.47317 * 29.99421 * 1 2 3 26 26 H 1.09000 * 109.47257 * 149.99848 * 1 2 3 27 27 H 1.07998 * 124.70499 * 179.97438 * 4 3 2 28 28 H 0.96994 * 120.00139 * 4.27939 * 9 7 6 29 29 H 1.07997 * 119.91483 * 0.02562 * 11 10 9 30 30 H 1.07993 * 120.08218 * 179.70355 * 12 11 10 31 31 H 0.96999 * 119.99315 * 179.97438 * 17 16 14 32 32 H 1.08001 * 120.08893 * 179.70836 * 22 13 12 33 33 H 1.07996 * 119.91891 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2208 1.0978 0.0000 4 6 3.5085 0.9723 -0.0005 5 16 3.9512 -0.6786 0.0055 6 6 2.2522 -1.1461 -0.0005 7 6 1.7317 -2.5168 -0.0002 8 8 0.5304 -2.7116 0.0001 9 7 2.5837 -3.5611 -0.0002 10 6 2.0925 -4.8595 -0.0900 11 6 2.8099 -5.8259 -0.7958 12 6 2.3316 -7.0991 -0.8931 13 6 1.1155 -7.4405 -0.2691 14 6 0.6169 -8.7576 -0.3605 15 1 1.2999 -9.5942 -0.3692 16 6 -0.7622 -8.9796 -0.4398 17 7 -1.5936 -7.9736 -0.3420 18 14 -1.4167 -10.7119 -0.6855 19 1 -0.9795 -11.5711 0.4441 20 1 -2.9005 -10.6779 -0.7354 21 1 -0.8906 -11.2637 -1.9597 22 6 0.3967 -6.4593 0.4419 23 6 0.8847 -5.1888 0.5259 24 1 -0.3632 -0.0001 1.0276 25 1 -0.3634 0.8900 -0.5137 26 1 -0.3634 -0.8900 -0.5139 27 1 4.2066 1.7962 -0.0010 28 1 3.5394 -3.4074 0.0622 29 1 3.7442 -5.5637 -1.2698 30 1 2.8856 -7.8448 -1.4437 31 1 -2.5497 -8.1276 -0.3974 32 1 -0.5386 -6.7126 0.9188 33 1 0.3346 -4.4354 1.0702 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000047959057.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:42 Heat of formation + Delta-G solvation = 13.287760 kcal Electronic energy + Delta-G solvation = -19265.045126 eV Core-core repulsion = 16188.582189 eV Total energy + Delta-G solvation = -3076.462938 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.58550 -40.55032 -38.96668 -36.26113 -34.77214 -32.93306 -31.48269 -31.08654 -29.34464 -26.78469 -25.98722 -23.75585 -23.13128 -21.90425 -20.50452 -19.35205 -19.23468 -18.42673 -17.37752 -17.09231 -16.59061 -16.26724 -15.77789 -15.51504 -15.08748 -14.77007 -14.59179 -14.49470 -13.97926 -13.65792 -13.58424 -13.50959 -13.25208 -12.84469 -12.70589 -12.40113 -12.31069 -11.80307 -11.72850 -11.30121 -10.97678 -10.77387 -10.61112 -10.54152 -9.86593 -9.46924 -8.78336 -8.50020 -6.33827 -0.83456 0.16342 0.53826 0.81541 1.12370 1.38804 1.39799 1.51573 1.54211 2.05882 2.15630 2.24602 2.81238 3.16972 3.65133 3.74803 3.98292 4.17993 4.41273 4.47308 4.65127 4.70821 4.82814 4.94024 5.10328 5.12744 5.27926 5.32287 5.39027 5.69702 5.82428 6.04369 6.12909 6.32819 6.48650 6.59007 6.69582 6.94947 6.99110 7.20762 8.42435 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.036881 B = 0.003545 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.016701 B = 7897.332253 C = 8555.234802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.138 3.862 3 N -0.501 5.501 4 C 0.049 3.951 5 S 0.227 5.773 6 C -0.329 4.329 7 C 0.579 3.421 8 O -0.550 6.550 9 N -0.637 5.637 10 C 0.014 3.986 11 C -0.104 4.104 12 C -0.209 4.209 13 C 0.069 3.931 14 C -0.496 4.496 15 H 0.081 0.919 16 C 0.023 3.977 17 N -0.844 5.844 18 Si 0.991 3.009 19 H -0.257 1.257 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.168 4.168 23 C -0.104 4.104 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.252 0.748 28 H 0.412 0.588 29 H 0.136 0.864 30 H 0.115 0.885 31 H 0.283 0.717 32 H 0.107 0.893 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.820 14.274 0.334 18.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.001 4.001 3 N -0.215 5.215 4 C -0.245 4.245 5 S 0.482 5.518 6 C -0.454 4.454 7 C 0.367 3.633 8 O -0.430 6.430 9 N -0.281 5.281 10 C -0.079 4.079 11 C -0.124 4.124 12 C -0.228 4.228 13 C 0.067 3.933 14 C -0.527 4.527 15 H 0.099 0.901 16 C -0.188 4.188 17 N -0.472 5.472 18 Si 0.811 3.189 19 H -0.182 1.182 20 H -0.198 1.198 21 H -0.184 1.184 22 C -0.188 4.188 23 C -0.125 4.125 24 H 0.101 0.899 25 H 0.107 0.893 26 H 0.095 0.905 27 H 0.268 0.732 28 H 0.249 0.751 29 H 0.154 0.846 30 H 0.133 0.867 31 H 0.093 0.907 32 H 0.124 0.876 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.572 14.254 0.332 18.363 hybrid contribution -1.224 -0.586 -0.027 1.357 sum 10.347 13.669 0.305 17.146 Atomic orbital electron populations 1.20585 0.86442 1.04021 1.03739 1.21131 0.98976 0.85311 0.94660 1.66135 1.06252 1.30632 1.18478 1.29529 0.94894 1.01695 0.98349 1.83578 1.01408 1.02750 1.64037 1.25590 0.99388 0.97342 1.23034 1.17142 0.86002 0.83443 0.76755 1.90793 1.16135 1.85163 1.50926 1.42675 1.09842 1.03630 1.71974 1.17298 0.98426 0.84234 1.07942 1.20434 1.00260 0.92872 0.98831 1.20955 0.99812 0.96437 1.05638 1.18069 0.91788 0.94170 0.89292 1.19770 0.92797 0.93461 1.46659 0.90073 1.26850 0.96905 1.03121 0.91958 1.69898 1.04566 1.34286 1.38453 0.85121 0.77212 0.76531 0.79994 1.18154 1.19823 1.18358 1.21179 1.01639 0.93277 1.02709 1.20666 0.96087 0.95942 0.99763 0.89891 0.89275 0.90491 0.73232 0.75087 0.84622 0.86722 0.90677 0.87556 0.88300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.48 9.72 71.24 0.69 -1.78 16 2 C 0.14 3.83 6.83 42.33 0.29 4.12 16 3 N -0.50 -11.46 10.49 -189.69 -1.99 -13.45 16 4 C 0.05 0.71 12.21 130.60 1.59 2.31 16 5 S 0.23 3.67 22.36 -56.49 -1.26 2.40 16 6 C -0.33 -9.24 6.51 24.10 0.16 -9.09 16 7 C 0.58 21.20 7.61 86.43 0.66 21.86 16 8 O -0.55 -24.80 11.74 -4.34 -0.05 -24.85 16 9 N -0.64 -22.16 5.29 -306.72 -1.62 -23.78 16 10 C 0.01 0.62 6.30 38.61 0.24 0.86 16 11 C -0.10 -4.32 9.90 22.14 0.22 -4.10 16 12 C -0.21 -9.88 9.74 22.48 0.22 -9.66 16 13 C 0.07 3.79 5.55 -21.27 -0.12 3.67 16 14 C -0.50 -27.03 9.02 23.39 0.21 -26.82 16 15 H 0.08 4.15 7.85 -2.91 -0.02 4.13 16 16 C 0.02 1.22 5.42 85.24 0.46 1.68 16 17 N -0.84 -46.79 10.59 21.82 0.23 -46.56 16 18 Si 0.99 39.49 29.56 68.60 2.03 41.52 16 19 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 20 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 21 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 22 C -0.17 -9.41 8.61 22.48 0.19 -9.21 16 23 C -0.10 -5.36 8.61 22.14 0.19 -5.17 16 24 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.08 2.57 6.05 -2.39 -0.01 2.55 16 27 H 0.25 1.02 8.06 -2.91 -0.02 0.99 16 28 H 0.41 10.80 8.01 -92.71 -0.74 10.05 16 29 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 30 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 31 H 0.28 14.41 8.30 -92.71 -0.77 13.64 16 32 H 0.11 6.38 6.13 -2.91 -0.02 6.36 16 33 H 0.10 5.17 6.22 -2.91 -0.02 5.15 16 Total: -1.00 -70.55 300.41 2.77 -67.78 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: 0.43 Total: 28.26 kcal Atomic # 6 Polarization: -36.33 SS G_CDS: 5.01 Total: -31.32 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -3.38 Total: -83.79 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.05 Total: -24.85 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Atomic # 16 Polarization: 3.67 SS G_CDS: -1.26 Total: 2.40 kcal Total: -70.55 2.77 -67.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047959057.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.069 kcal (2) G-P(sol) polarization free energy of solvation -70.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds