Wall clock time and date at job start Tue Mar 31 2020 05:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30933 * 1 3 3 Si 1.86804 * 119.99682 * 2 1 4 4 H 1.48499 * 109.46826 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46914 * 299.99874 * 3 2 1 6 6 H 1.48496 * 109.47151 * 59.99720 * 3 2 1 7 7 C 1.39813 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00301 * 199.07881 * 7 2 1 9 9 C 1.41097 * 120.00236 * 19.08271 * 7 2 1 10 10 C 1.40919 * 120.14859 * 23.86873 * 9 7 2 11 11 C 1.36285 * 119.84180 * 180.02562 * 10 9 7 12 12 C 1.39639 * 120.15638 * 0.02562 * 11 10 9 13 13 N 1.38719 * 119.84538 * 179.97438 * 12 11 10 14 14 C 1.39853 * 119.99760 * 185.92886 * 13 12 11 15 15 C 1.38943 * 120.01292 * 256.22702 * 14 13 12 16 16 C 1.38030 * 120.00811 * 179.72455 * 15 14 13 17 17 C 1.38939 * 120.02700 * 0.27143 * 16 15 14 18 18 N 1.39877 * 119.99199 * 179.97438 * 17 16 15 19 19 C 1.38892 * 120.02156 * 359.97438 * 17 16 15 20 20 C 1.38148 * 119.99051 * 0.02562 * 19 17 16 21 21 Cl 1.73598 * 120.01122 * 180.02562 * 20 19 17 22 22 C 1.39639 * 120.30520 * 0.23049 * 12 11 10 23 23 C 1.36296 * 120.15406 * 359.48788 * 22 12 11 24 24 H 0.96994 * 120.00330 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.07411 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.92192 * 179.97438 * 11 10 9 27 27 H 0.96994 * 120.00210 * 5.92766 * 13 12 11 28 28 H 1.07999 * 119.98932 * 359.97438 * 15 14 13 29 29 H 1.08002 * 119.98764 * 180.25242 * 16 15 14 30 30 H 0.97000 * 119.99738 * 0.02562 * 18 17 16 31 31 H 0.96994 * 120.00608 * 180.02562 * 18 17 16 32 32 H 1.07996 * 120.00814 * 180.02562 * 19 17 16 33 33 H 1.07996 * 119.91838 * 179.72256 * 22 12 11 34 34 H 1.07991 * 120.07875 * 180.25798 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2433 1.6178 0.0000 4 1 3.7032 1.3465 -0.0006 5 1 1.8844 2.3965 -1.2126 6 1 1.8844 2.3965 1.2124 7 6 2.0084 -1.2108 0.0005 8 1 3.0439 -1.2364 0.3063 9 6 1.3612 -2.3994 -0.3984 10 6 0.2375 -2.3429 -1.2470 11 6 -0.3832 -3.4948 -1.6280 12 6 0.0915 -4.7289 -1.1792 13 7 -0.5456 -5.8974 -1.5706 14 6 -0.1522 -7.1242 -1.0266 15 6 0.6210 -8.0014 -1.7771 16 6 1.0140 -9.2098 -1.2380 17 6 0.6320 -9.5521 0.0532 18 7 1.0302 -10.7771 0.5986 19 6 -0.1452 -8.6784 0.8027 20 6 -0.5390 -7.4688 0.2639 21 17 -1.5098 -6.3761 1.2005 22 6 1.2011 -4.7920 -0.3338 23 6 1.8350 -3.6482 0.0504 24 1 -0.4850 0.8400 0.0004 25 1 -0.1313 -1.3889 -1.5938 26 1 -1.2447 -3.4529 -2.2780 27 1 -1.2638 -5.8635 -2.2215 28 1 0.9178 -7.7358 -2.7810 29 1 1.6184 -9.8896 -1.8203 30 1 1.5732 -11.3872 0.0754 31 1 0.7633 -11.0165 1.4998 32 1 -0.4416 -8.9446 1.8065 33 1 1.5602 -5.7496 0.0131 34 1 2.6955 -3.6987 0.7009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051601256.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:45 Heat of formation + Delta-G solvation = 44.327700 kcal Electronic energy + Delta-G solvation = -19373.766640 eV Core-core repulsion = 16296.605989 eV Total energy + Delta-G solvation = -3077.160651 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.58137 -37.71912 -36.16669 -35.41846 -33.63331 -32.39967 -30.60055 -29.56038 -28.78748 -27.01121 -24.32332 -22.76470 -21.93718 -20.76074 -20.14574 -17.35005 -17.13668 -17.01001 -16.41407 -16.04810 -15.01605 -14.54752 -14.33002 -13.84263 -13.57930 -13.40757 -13.02599 -12.55959 -12.37231 -11.93518 -11.83296 -11.67548 -11.57045 -11.18814 -11.01496 -10.79522 -10.53465 -10.43756 -10.12441 -9.64895 -9.29471 -9.23721 -8.64774 -8.63067 -7.45641 -7.41481 -6.63068 -6.38608 -4.00280 1.36115 1.58015 2.53735 2.92996 3.16717 3.19036 3.23041 3.38503 3.77186 3.83290 4.07859 4.32938 4.79332 4.96260 5.14333 5.53083 5.59800 5.87306 5.88576 6.04674 6.23581 6.35382 6.40358 6.64034 6.65388 6.97076 7.12464 7.25389 7.32356 7.39763 7.62801 7.67154 7.73234 7.87799 8.19726 8.39422 8.57574 8.70915 8.82558 9.09767 9.19272 10.39110 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.029972 B = 0.003914 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.991681 B = 7151.518312 C = 7296.437304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.075 3.925 3 Si 0.901 3.099 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.466 4.466 8 H 0.073 0.927 9 C 0.080 3.920 10 C -0.130 4.130 11 C -0.153 4.153 12 C 0.088 3.912 13 N -0.707 5.707 14 C 0.131 3.869 15 C -0.072 4.072 16 C -0.188 4.188 17 C 0.212 3.788 18 N -0.880 5.880 19 C -0.188 4.188 20 C 0.004 3.996 21 Cl -0.053 7.053 22 C -0.139 4.139 23 C -0.191 4.191 24 H 0.275 0.725 25 H 0.118 0.882 26 H 0.087 0.913 27 H 0.394 0.606 28 H 0.130 0.870 29 H 0.122 0.878 30 H 0.397 0.603 31 H 0.397 0.603 32 H 0.127 0.873 33 H 0.084 0.916 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.042 -16.713 -1.121 16.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.497 4.497 8 H 0.091 0.909 9 C 0.077 3.923 10 C -0.149 4.149 11 C -0.175 4.175 12 C -0.007 4.007 13 N -0.339 5.339 14 C 0.034 3.966 15 C -0.093 4.093 16 C -0.211 4.211 17 C 0.108 3.892 18 N -0.420 5.420 19 C -0.212 4.212 20 C -0.025 4.025 21 Cl -0.024 7.024 22 C -0.161 4.161 23 C -0.212 4.212 24 H 0.086 0.914 25 H 0.136 0.864 26 H 0.105 0.895 27 H 0.229 0.771 28 H 0.148 0.852 29 H 0.140 0.860 30 H 0.225 0.775 31 H 0.225 0.775 32 H 0.145 0.855 33 H 0.102 0.898 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.240 -16.435 -0.940 16.508 hybrid contribution 0.102 0.535 0.178 0.573 sum -1.138 -15.899 -0.762 15.958 Atomic orbital electron populations 1.69889 1.07369 1.28517 1.37348 1.25791 0.94617 1.00881 0.92701 0.86393 0.81062 0.81663 0.78308 1.18614 1.19955 1.20298 1.19396 0.98415 0.91554 1.40297 0.90910 1.17499 0.92225 0.91917 0.90629 1.20870 0.98507 0.96366 0.99201 1.20005 1.01075 0.91629 1.04760 1.17234 0.95930 0.84438 1.03074 1.41123 1.41586 1.01425 1.49756 1.17043 0.99615 0.88615 0.91309 1.21230 0.94824 0.93023 1.00224 1.20494 1.06894 0.98959 0.94785 1.17543 0.93284 0.86289 0.92118 1.42402 1.61751 1.18604 1.19260 1.20284 1.05586 0.94339 1.01003 1.21382 0.96586 0.91269 0.93312 1.98387 1.68842 1.63199 1.71963 1.19826 0.97196 0.96904 1.02144 1.20523 1.02907 0.92603 1.05132 0.91383 0.86392 0.89499 0.77101 0.85196 0.85975 0.77478 0.77545 0.85541 0.89756 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.57 10.98 55.54 0.61 -20.96 16 2 C 0.08 1.97 5.11 -17.35 -0.09 1.88 16 3 Si 0.90 19.42 29.60 -169.99 -5.03 14.39 16 4 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.47 -12.82 9.02 -37.91 -0.34 -13.16 16 8 H 0.07 1.95 7.91 -52.49 -0.42 1.53 16 9 C 0.08 2.19 5.58 -106.79 -0.60 1.60 16 10 C -0.13 -3.42 8.64 -39.27 -0.34 -3.76 16 11 C -0.15 -3.59 9.82 -39.76 -0.39 -3.98 16 12 C 0.09 1.93 6.11 -83.70 -0.51 1.42 16 13 N -0.71 -12.64 4.87 -8.23 -0.04 -12.68 16 14 C 0.13 2.14 4.49 -83.63 -0.38 1.76 16 15 C -0.07 -1.00 9.96 -39.40 -0.39 -1.39 16 16 C -0.19 -2.21 9.89 -39.40 -0.39 -2.60 16 17 C 0.21 2.45 6.76 -83.68 -0.57 1.89 16 18 N -0.88 -6.92 9.10 32.45 0.30 -6.62 16 19 C -0.19 -2.51 9.67 -39.37 -0.38 -2.89 16 20 C 0.00 0.07 5.89 -39.31 -0.23 -0.16 16 21 Cl -0.05 -0.93 27.98 -51.86 -1.45 -2.38 16 22 C -0.14 -3.23 9.12 -39.76 -0.36 -3.59 16 23 C -0.19 -4.88 9.74 -39.27 -0.38 -5.26 16 24 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 25 H 0.12 3.23 6.15 -52.49 -0.32 2.90 16 26 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 27 H 0.39 6.30 8.82 -40.82 -0.36 5.94 16 28 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 29 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 30 H 0.40 2.31 8.84 -40.82 -0.36 1.95 16 31 H 0.40 2.50 8.84 -40.82 -0.36 2.14 16 32 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.08 1.87 6.75 -52.49 -0.35 1.52 16 34 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 309.56 15.07 4.66 4.66 Total: -1.00 -29.69 309.56 -9.72 -39.41 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -3.42 Total: 12.45 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: -5.35 Total: -28.26 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.86 Total: -40.27 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.39 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.45 Total: -2.38 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.69 -9.72 -39.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601256.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.737 kcal (2) G-P(sol) polarization free energy of solvation -29.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds