Wall clock time and date at job start Tue Mar 31 2020 05:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30933 * 1 3 3 Si 1.86804 * 119.99682 * 2 1 4 4 H 1.48499 * 109.46826 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46914 * 299.99874 * 3 2 1 6 6 H 1.48496 * 109.47151 * 59.99720 * 3 2 1 7 7 C 1.39813 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00301 * 199.07881 * 7 2 1 9 9 C 1.41097 * 120.00236 * 19.08271 * 7 2 1 10 10 C 1.40919 * 120.14859 * 23.86873 * 9 7 2 11 11 C 1.36285 * 119.84180 * 180.02562 * 10 9 7 12 12 C 1.39639 * 120.15638 * 0.02562 * 11 10 9 13 13 N 1.38719 * 119.84538 * 179.97438 * 12 11 10 14 14 C 1.39853 * 119.99760 * 185.92886 * 13 12 11 15 15 C 1.38943 * 120.01292 * 256.22702 * 14 13 12 16 16 C 1.38030 * 120.00811 * 179.72455 * 15 14 13 17 17 C 1.38939 * 120.02700 * 0.27143 * 16 15 14 18 18 N 1.39877 * 119.99199 * 179.97438 * 17 16 15 19 19 C 1.38892 * 120.02156 * 359.97438 * 17 16 15 20 20 C 1.38148 * 119.99051 * 0.02562 * 19 17 16 21 21 Cl 1.73598 * 120.01122 * 180.02562 * 20 19 17 22 22 C 1.39639 * 120.30520 * 0.23049 * 12 11 10 23 23 C 1.36296 * 120.15406 * 359.48788 * 22 12 11 24 24 H 0.96994 * 120.00330 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.07411 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.92192 * 179.97438 * 11 10 9 27 27 H 0.96994 * 120.00210 * 5.92766 * 13 12 11 28 28 H 1.07999 * 119.98932 * 359.97438 * 15 14 13 29 29 H 1.08002 * 119.98764 * 180.25242 * 16 15 14 30 30 H 0.97000 * 119.99738 * 0.02562 * 18 17 16 31 31 H 0.96994 * 120.00608 * 180.02562 * 18 17 16 32 32 H 1.07996 * 120.00814 * 180.02562 * 19 17 16 33 33 H 1.07996 * 119.91838 * 179.72256 * 22 12 11 34 34 H 1.07991 * 120.07875 * 180.25798 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2433 1.6178 0.0000 4 1 3.7032 1.3465 -0.0006 5 1 1.8844 2.3965 -1.2126 6 1 1.8844 2.3965 1.2124 7 6 2.0084 -1.2108 0.0005 8 1 3.0439 -1.2364 0.3063 9 6 1.3612 -2.3994 -0.3984 10 6 0.2375 -2.3429 -1.2470 11 6 -0.3832 -3.4948 -1.6280 12 6 0.0915 -4.7289 -1.1792 13 7 -0.5456 -5.8974 -1.5706 14 6 -0.1522 -7.1242 -1.0266 15 6 0.6210 -8.0014 -1.7771 16 6 1.0140 -9.2098 -1.2380 17 6 0.6320 -9.5521 0.0532 18 7 1.0302 -10.7771 0.5986 19 6 -0.1452 -8.6784 0.8027 20 6 -0.5390 -7.4688 0.2639 21 17 -1.5098 -6.3761 1.2005 22 6 1.2011 -4.7920 -0.3338 23 6 1.8350 -3.6482 0.0504 24 1 -0.4850 0.8400 0.0004 25 1 -0.1313 -1.3889 -1.5938 26 1 -1.2447 -3.4529 -2.2780 27 1 -1.2638 -5.8635 -2.2215 28 1 0.9178 -7.7358 -2.7810 29 1 1.6184 -9.8896 -1.8203 30 1 1.5732 -11.3872 0.0754 31 1 0.7633 -11.0165 1.4998 32 1 -0.4416 -8.9446 1.8065 33 1 1.5602 -5.7496 0.0131 34 1 2.6955 -3.6987 0.7009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051601256.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:44 Heat of formation + Delta-G solvation = 27.180527 kcal Electronic energy + Delta-G solvation = -19374.510197 eV Core-core repulsion = 16296.605989 eV Total energy + Delta-G solvation = -3077.904208 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.072 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.76795 -39.38855 -37.41049 -36.86529 -35.19433 -33.83874 -31.64898 -31.40376 -30.57545 -28.33189 -26.10851 -23.81939 -23.35266 -22.54555 -21.78284 -19.12928 -18.39059 -17.95304 -17.67178 -17.64329 -16.84634 -15.67306 -15.57995 -15.37240 -14.85527 -14.69320 -14.50323 -14.23094 -13.88009 -13.71737 -13.42025 -13.32041 -12.83087 -12.73648 -12.71641 -12.36537 -12.24446 -11.77511 -11.54660 -11.28622 -11.15451 -11.02494 -10.43433 -9.72308 -9.36168 -8.58416 -8.45215 -8.11461 -5.99627 0.30171 0.49909 1.12422 1.23210 1.33736 1.40985 1.55364 1.60186 2.28513 2.71981 2.86620 2.91774 3.09999 3.87462 3.96776 4.23025 4.45011 4.51550 4.51774 4.58015 4.88620 4.97357 5.09187 5.21829 5.28123 5.33095 5.45790 5.55609 5.66224 5.77229 5.86683 5.99235 6.20889 6.44709 6.54959 6.72116 6.94038 7.03824 7.10339 7.20028 7.29561 8.48808 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.029972 B = 0.003914 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.991681 B = 7151.518312 C = 7296.437304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.034 3.966 3 Si 0.975 3.025 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.269 1.269 7 C -0.505 4.505 8 H 0.066 0.934 9 C 0.043 3.957 10 C -0.145 4.145 11 C -0.165 4.165 12 C 0.119 3.881 13 N -0.697 5.697 14 C 0.093 3.907 15 C -0.070 4.070 16 C -0.183 4.183 17 C 0.225 3.775 18 N -0.862 5.862 19 C -0.197 4.197 20 C -0.009 4.009 21 Cl -0.079 7.079 22 C -0.143 4.143 23 C -0.202 4.202 24 H 0.282 0.718 25 H 0.101 0.899 26 H 0.109 0.891 27 H 0.403 0.597 28 H 0.140 0.860 29 H 0.155 0.845 30 H 0.411 0.589 31 H 0.407 0.593 32 H 0.140 0.860 33 H 0.097 0.903 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.415 -19.137 -1.555 19.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.178 4.178 3 Si 0.797 3.203 4 H -0.185 1.185 5 H -0.190 1.190 6 H -0.194 1.194 7 C -0.536 4.536 8 H 0.084 0.916 9 C 0.040 3.960 10 C -0.165 4.165 11 C -0.187 4.187 12 C 0.022 3.978 13 N -0.328 5.328 14 C -0.004 4.004 15 C -0.091 4.091 16 C -0.207 4.207 17 C 0.119 3.881 18 N -0.402 5.402 19 C -0.222 4.222 20 C -0.039 4.039 21 Cl -0.050 7.050 22 C -0.165 4.165 23 C -0.222 4.222 24 H 0.093 0.907 25 H 0.119 0.881 26 H 0.127 0.873 27 H 0.239 0.761 28 H 0.158 0.842 29 H 0.173 0.827 30 H 0.242 0.758 31 H 0.237 0.763 32 H 0.157 0.843 33 H 0.115 0.885 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.616 -18.957 -1.370 19.016 hybrid contribution -0.117 0.901 0.304 0.958 sum -0.733 -18.056 -1.067 18.102 Atomic orbital electron populations 1.69946 1.08760 1.29761 1.38201 1.26595 0.95406 1.04055 0.91785 0.85269 0.79427 0.76893 0.78708 1.18451 1.19000 1.19418 1.19597 0.98461 0.92991 1.42598 0.91556 1.17781 0.93428 0.92744 0.92022 1.20811 0.99031 0.96712 0.99967 1.20204 1.01706 0.91452 1.05293 1.17252 0.94617 0.85480 1.00440 1.41015 1.41219 1.01046 1.49527 1.17249 1.02371 0.88552 0.92181 1.21343 0.94072 0.93237 1.00426 1.20820 1.06326 0.98557 0.94950 1.17633 0.91741 0.86883 0.91882 1.42411 1.60685 1.17243 1.19865 1.20443 1.05992 0.93826 1.01894 1.21495 0.97275 0.91965 0.93134 1.98376 1.69725 1.64272 1.72612 1.19895 0.97505 0.96623 1.02468 1.20677 1.03247 0.92966 1.05329 0.90739 0.88137 0.87298 0.76059 0.84214 0.82733 0.75803 0.76315 0.84258 0.88458 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.50 10.98 21.81 0.24 -46.26 16 2 C 0.03 1.81 5.11 85.21 0.44 2.24 16 3 Si 0.98 40.74 29.60 68.60 2.03 42.77 16 4 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 6 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 7 C -0.51 -29.02 9.02 23.35 0.21 -28.81 16 8 H 0.07 3.72 7.91 -2.91 -0.02 3.70 16 9 C 0.04 2.45 5.58 -21.27 -0.12 2.33 16 10 C -0.15 -7.94 8.64 22.47 0.19 -7.75 16 11 C -0.16 -7.80 9.82 22.15 0.22 -7.58 16 12 C 0.12 5.19 6.11 38.73 0.24 5.43 16 13 N -0.70 -24.12 4.87 -179.97 -0.88 -25.00 16 14 C 0.09 2.86 4.49 38.23 0.17 3.03 16 15 C -0.07 -1.74 9.96 22.39 0.22 -1.52 16 16 C -0.18 -3.57 9.89 22.39 0.22 -3.35 16 17 C 0.23 4.37 6.76 38.18 0.26 4.63 16 18 N -0.86 -9.75 9.10 -51.24 -0.47 -10.21 16 19 C -0.20 -4.79 9.67 22.41 0.22 -4.57 16 20 C -0.01 -0.28 5.89 22.44 0.13 -0.15 16 21 Cl -0.08 -2.73 27.98 -2.72 -0.08 -2.81 16 22 C -0.14 -6.65 9.12 22.16 0.20 -6.44 16 23 C -0.20 -10.58 9.74 22.47 0.22 -10.36 16 24 H 0.28 14.19 8.30 -92.71 -0.77 13.42 16 25 H 0.10 5.76 6.15 -2.91 -0.02 5.75 16 26 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 27 H 0.40 12.36 8.82 -92.71 -0.82 11.54 16 28 H 0.14 3.15 8.06 -2.91 -0.02 3.12 16 29 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 30 H 0.41 2.78 8.84 -92.71 -0.82 1.96 16 31 H 0.41 3.43 8.84 -92.71 -0.82 2.61 16 32 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 33 H 0.10 4.24 6.75 -2.91 -0.02 4.22 16 34 H 0.09 4.53 8.06 -2.92 -0.02 4.51 16 Total: -1.00 -66.43 309.56 2.39 -64.05 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: -1.28 Total: 30.34 kcal Atomic # 6 Polarization: -55.70 SS G_CDS: 2.82 Total: -52.88 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -1.10 Total: -81.47 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Atomic # 17 Polarization: -2.73 SS G_CDS: -0.08 Total: -2.81 kcal Total: -66.43 2.39 -64.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601256.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.228 kcal (2) G-P(sol) polarization free energy of solvation -66.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds