Wall clock time and date at job start Tue Mar 31 2020 05:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33479 * 122.71948 * 2 1 4 4 S 1.76169 * 108.06699 * 180.02562 * 3 2 1 5 5 C 1.70969 * 90.34394 * 359.97438 * 4 3 2 6 6 N 1.38819 * 124.94878 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99825 * 0.02562 * 6 5 4 8 8 O 1.21635 * 119.99912 * 0.02562 * 7 6 5 9 9 C 1.47343 * 119.99994 * 179.97438 * 7 6 5 10 10 C 1.39274 * 120.29114 * 354.91447 * 9 7 6 11 11 C 1.38180 * 120.09122 * 180.27489 * 10 9 7 12 12 C 1.38849 * 120.68453 * 359.48325 * 11 10 9 13 13 C 1.37575 * 120.57941 * 0.51691 * 12 11 10 14 14 C 1.40725 * 119.88487 * 359.74485 * 13 12 11 15 15 C 1.40848 * 120.33381 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00244 * 141.29929 * 15 14 13 17 17 C 1.40279 * 119.99852 * 321.29886 * 15 14 13 18 18 N 1.30626 * 120.00210 * 174.57706 * 17 15 14 19 19 Si 1.86801 * 119.99903 * 354.57089 * 17 15 14 20 20 H 1.48505 * 109.46668 * 89.16687 * 19 17 15 21 21 H 1.48501 * 109.47331 * 209.15900 * 19 17 15 22 22 H 1.48499 * 109.47256 * 329.16542 * 19 17 15 23 23 N 1.29671 * 110.10609 * 0.23223 * 5 4 3 24 24 H 1.08998 * 109.47450 * 89.99725 * 1 2 3 25 25 H 1.09004 * 109.46636 * 210.00141 * 1 2 3 26 26 H 1.09002 * 109.46458 * 329.99526 * 1 2 3 27 27 H 1.08006 * 125.96911 * 0.04879 * 3 2 1 28 28 H 0.96989 * 120.00192 * 180.02562 * 6 5 4 29 29 H 1.08005 * 119.95006 * 359.97438 * 10 9 7 30 30 H 1.08004 * 119.65386 * 179.71993 * 11 10 9 31 31 H 1.07998 * 119.71412 * 180.28813 * 12 11 10 32 32 H 1.07993 * 120.05827 * 179.77077 * 13 12 11 33 33 H 0.96995 * 120.00249 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2285 1.1230 0.0000 4 16 3.9329 0.6774 -0.0007 5 6 3.5103 -0.9793 -0.0002 6 7 4.4164 -2.0311 -0.0010 7 6 5.7405 -1.7798 -0.0017 8 8 6.1416 -0.6315 -0.0012 9 6 6.7022 -2.8961 -0.0019 10 6 6.2532 -4.2101 0.1052 11 6 7.1591 -5.2535 0.1103 12 6 8.5214 -5.0097 -0.0015 13 6 8.9956 -3.7227 -0.1088 14 6 8.0948 -2.6415 -0.1110 15 6 8.5698 -1.3201 -0.2210 16 1 8.0270 -0.5986 -0.8135 17 6 9.7481 -0.9411 0.4394 18 7 10.2463 0.2520 0.2533 19 14 10.6045 -2.1427 1.5849 20 1 11.5743 -2.9587 0.8110 21 1 11.3246 -1.3900 2.6433 22 1 9.5956 -3.0345 2.2110 23 7 2.2203 -1.1103 -0.0045 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3632 0.8900 0.5139 27 1 1.8360 2.1292 0.0007 28 1 4.0965 -2.9467 -0.0010 29 1 5.1958 -4.4135 0.1893 30 1 6.8035 -6.2695 0.1982 31 1 9.2153 -5.8373 -0.0004 32 1 10.0571 -3.5424 -0.1915 33 1 11.0608 0.5141 0.7101 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058248482.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:58 Heat of formation + Delta-G solvation = 34.987262 kcal Electronic energy + Delta-G solvation = -19639.258171 eV Core-core repulsion = 16563.736195 eV Total energy + Delta-G solvation = -3075.521977 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.01633 -39.05069 -37.34140 -34.63255 -33.70377 -31.26584 -30.68316 -29.98936 -27.30209 -25.76749 -24.15744 -22.46678 -21.28353 -20.67111 -19.23859 -17.85342 -17.44344 -16.77634 -16.13104 -15.53816 -15.23547 -14.63677 -14.27374 -14.00343 -13.85393 -13.68392 -12.97408 -12.78879 -12.70056 -12.54182 -12.39561 -12.13685 -11.73048 -11.15969 -11.00108 -10.93248 -10.57543 -10.38006 -10.18381 -9.94336 -9.42703 -9.37953 -8.88192 -8.79511 -8.09858 -7.84074 -7.71333 -7.05870 -4.67182 1.12674 1.58658 1.85489 2.33086 2.44194 2.98035 3.00828 3.10189 3.17145 3.17712 3.71712 3.83169 4.40224 4.77277 5.16187 5.36166 5.51826 5.57293 5.63913 5.64420 5.81920 5.85859 5.96703 6.15202 6.29675 6.32209 6.59066 6.68607 6.90387 7.00360 7.16316 7.34079 7.47515 7.67761 7.81421 8.15837 8.26216 8.40116 8.61172 8.73127 9.91453 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.022424 B = 0.005177 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.383542 B = 5406.752211 C = 6471.353507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.088 3.912 3 C -0.347 4.347 4 S 0.246 5.754 5 C 0.265 3.735 6 N -0.634 5.634 7 C 0.554 3.446 8 O -0.488 6.488 9 C -0.252 4.252 10 C -0.038 4.038 11 C -0.246 4.246 12 C -0.062 4.062 13 C -0.219 4.219 14 C 0.119 3.881 15 C -0.391 4.391 16 H 0.117 0.883 17 C 0.079 3.921 18 N -0.786 5.786 19 Si 0.909 3.091 20 H -0.266 1.266 21 H -0.287 1.287 22 H -0.242 1.242 23 N -0.535 5.535 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.167 0.833 28 H 0.415 0.585 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.534 -2.174 0.763 9.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.045 4.045 3 C -0.488 4.488 4 S 0.497 5.503 5 C -0.103 4.103 6 N -0.285 5.285 7 C 0.349 3.651 8 O -0.363 6.363 9 C -0.257 4.257 10 C -0.057 4.057 11 C -0.265 4.265 12 C -0.081 4.081 13 C -0.238 4.238 14 C 0.114 3.886 15 C -0.418 4.418 16 H 0.134 0.866 17 C -0.143 4.143 18 N -0.408 5.408 19 Si 0.735 3.265 20 H -0.192 1.192 21 H -0.214 1.214 22 H -0.165 1.165 23 N -0.260 5.260 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.184 0.816 28 H 0.254 0.746 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.127 0.873 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.197 -1.136 0.780 8.312 hybrid contribution -0.674 -1.041 0.479 1.329 sum -8.871 -2.177 1.258 9.220 Atomic orbital electron populations 1.20289 0.87904 1.02729 1.02405 1.19716 0.97246 0.86359 1.01197 1.27220 0.99888 1.03339 1.18350 1.85248 1.00959 0.96464 1.67663 1.23514 0.90351 0.95261 1.01150 1.43249 1.05019 1.07690 1.72496 1.18793 0.79591 0.90623 0.76066 1.90723 1.75513 1.22035 1.48073 1.19000 0.93132 0.90329 1.23221 1.20812 0.97351 0.92343 0.95209 1.20328 0.93142 0.97233 1.15833 1.20804 0.95141 0.95906 0.96219 1.21216 0.98715 0.92680 1.11162 1.17489 0.89602 0.93514 0.87948 1.20005 1.03741 0.95627 1.22435 0.86578 1.26339 0.95327 0.95966 0.96645 1.69527 1.17873 1.19156 1.34281 0.86372 0.80032 0.80364 0.79781 1.19196 1.21412 1.16476 1.66210 1.02475 1.32485 1.24850 0.91122 0.91086 0.91096 0.81550 0.74607 0.88416 0.88074 0.88167 0.87347 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.31 36.01 0.37 -0.44 16 2 C 0.09 1.34 6.74 -84.20 -0.57 0.77 16 3 C -0.35 -5.14 11.11 29.07 0.32 -4.81 16 4 S 0.25 4.40 20.21 -107.50 -2.17 2.22 16 5 C 0.26 4.92 8.19 -87.49 -0.72 4.20 16 6 N -0.63 -11.70 5.35 -14.10 -0.08 -11.78 16 7 C 0.55 12.02 7.68 -12.56 -0.10 11.92 16 8 O -0.49 -11.87 11.13 5.25 0.06 -11.81 16 9 C -0.25 -5.54 5.92 -104.37 -0.62 -6.16 16 10 C -0.04 -0.72 9.52 -39.22 -0.37 -1.09 16 11 C -0.25 -4.50 10.03 -39.38 -0.39 -4.89 16 12 C -0.06 -1.20 10.01 -39.60 -0.40 -1.59 16 13 C -0.22 -4.82 6.94 -38.88 -0.27 -5.09 16 14 C 0.12 2.87 5.04 -106.53 -0.54 2.34 16 15 C -0.39 -10.27 8.08 -37.83 -0.31 -10.58 16 16 H 0.12 3.35 6.37 -52.49 -0.33 3.01 16 17 C 0.08 1.99 5.51 -17.30 -0.10 1.89 16 18 N -0.79 -20.27 13.92 55.56 0.77 -19.50 16 19 Si 0.91 19.62 24.48 -169.99 -4.16 15.45 16 20 H -0.27 -5.43 6.70 56.52 0.38 -5.06 16 21 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.24 -5.34 6.68 56.52 0.38 -4.96 16 23 N -0.53 -9.41 10.58 -11.31 -0.12 -9.53 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 27 H 0.17 1.95 8.06 -52.48 -0.42 1.53 16 28 H 0.42 6.57 6.87 -40.82 -0.28 6.29 16 29 H 0.10 1.49 6.43 -52.48 -0.34 1.16 16 30 H 0.10 1.56 8.06 -52.48 -0.42 1.14 16 31 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.11 2.34 4.89 -52.49 -0.26 2.08 16 33 H 0.29 6.72 8.29 -40.82 -0.34 6.38 16 LS Contribution 292.64 15.07 4.41 4.41 Total: -1.00 -28.20 292.64 -7.89 -36.09 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -2.93 Total: 7.97 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -3.68 Total: -13.53 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.58 Total: -40.81 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.06 Total: -11.81 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.16 Total: 15.45 kcal Atomic # 16 Polarization: 4.40 SS G_CDS: -2.17 Total: 2.22 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.20 -7.89 -36.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058248482.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.078 kcal (2) G-P(sol) polarization free energy of solvation -28.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds