Wall clock time and date at job start Tue Mar 31 2020 05:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33479 * 122.71948 * 2 1 4 4 S 1.76169 * 108.06699 * 180.02562 * 3 2 1 5 5 C 1.70969 * 90.34394 * 359.97438 * 4 3 2 6 6 N 1.38819 * 124.94878 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99825 * 0.02562 * 6 5 4 8 8 O 1.21635 * 119.99912 * 0.02562 * 7 6 5 9 9 C 1.47343 * 119.99994 * 179.97438 * 7 6 5 10 10 C 1.39274 * 120.29114 * 354.91447 * 9 7 6 11 11 C 1.38180 * 120.09122 * 180.27489 * 10 9 7 12 12 C 1.38849 * 120.68453 * 359.48325 * 11 10 9 13 13 C 1.37575 * 120.57941 * 0.51691 * 12 11 10 14 14 C 1.40725 * 119.88487 * 359.74485 * 13 12 11 15 15 C 1.40848 * 120.33381 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00244 * 141.29929 * 15 14 13 17 17 C 1.40279 * 119.99852 * 321.29886 * 15 14 13 18 18 N 1.30626 * 120.00210 * 174.57706 * 17 15 14 19 19 Si 1.86801 * 119.99903 * 354.57089 * 17 15 14 20 20 H 1.48505 * 109.46668 * 89.16687 * 19 17 15 21 21 H 1.48501 * 109.47331 * 209.15900 * 19 17 15 22 22 H 1.48499 * 109.47256 * 329.16542 * 19 17 15 23 23 N 1.29671 * 110.10609 * 0.23223 * 5 4 3 24 24 H 1.08998 * 109.47450 * 89.99725 * 1 2 3 25 25 H 1.09004 * 109.46636 * 210.00141 * 1 2 3 26 26 H 1.09002 * 109.46458 * 329.99526 * 1 2 3 27 27 H 1.08006 * 125.96911 * 0.04879 * 3 2 1 28 28 H 0.96989 * 120.00192 * 180.02562 * 6 5 4 29 29 H 1.08005 * 119.95006 * 359.97438 * 10 9 7 30 30 H 1.08004 * 119.65386 * 179.71993 * 11 10 9 31 31 H 1.07998 * 119.71412 * 180.28813 * 12 11 10 32 32 H 1.07993 * 120.05827 * 179.77077 * 13 12 11 33 33 H 0.96995 * 120.00249 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2285 1.1230 0.0000 4 16 3.9329 0.6774 -0.0007 5 6 3.5103 -0.9793 -0.0002 6 7 4.4164 -2.0311 -0.0010 7 6 5.7405 -1.7798 -0.0017 8 8 6.1416 -0.6315 -0.0012 9 6 6.7022 -2.8961 -0.0019 10 6 6.2532 -4.2101 0.1052 11 6 7.1591 -5.2535 0.1103 12 6 8.5214 -5.0097 -0.0015 13 6 8.9956 -3.7227 -0.1088 14 6 8.0948 -2.6415 -0.1110 15 6 8.5698 -1.3201 -0.2210 16 1 8.0270 -0.5986 -0.8135 17 6 9.7481 -0.9411 0.4394 18 7 10.2463 0.2520 0.2533 19 14 10.6045 -2.1427 1.5849 20 1 11.5743 -2.9587 0.8110 21 1 11.3246 -1.3900 2.6433 22 1 9.5956 -3.0345 2.2110 23 7 2.2203 -1.1103 -0.0045 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3632 0.8900 0.5139 27 1 1.8360 2.1292 0.0007 28 1 4.0965 -2.9467 -0.0010 29 1 5.1958 -4.4135 0.1893 30 1 6.8035 -6.2695 0.1982 31 1 9.2153 -5.8373 -0.0004 32 1 10.0571 -3.5424 -0.1915 33 1 11.0608 0.5141 0.7101 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058248482.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:57 Heat of formation + Delta-G solvation = 17.091085 kcal Electronic energy + Delta-G solvation = -19640.034208 eV Core-core repulsion = 16563.736195 eV Total energy + Delta-G solvation = -3076.298013 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.55961 -40.48372 -38.97503 -36.22608 -35.43110 -32.63387 -32.38694 -31.42168 -28.42178 -27.45874 -25.66906 -24.01342 -22.91927 -22.18325 -20.66600 -19.52994 -18.97099 -18.29601 -17.55792 -17.21623 -16.71767 -16.23180 -15.85891 -15.52804 -15.28124 -15.03436 -14.61903 -14.40384 -14.02796 -13.92206 -13.56816 -13.32553 -13.26085 -12.73787 -12.62232 -12.50628 -12.13809 -11.88475 -11.71596 -11.63580 -11.11541 -10.76749 -10.56926 -10.20467 -9.69190 -9.49408 -9.12886 -8.85183 -6.54019 -0.27937 0.21290 0.26600 0.79399 1.03718 1.25298 1.37002 1.46487 1.67758 1.69352 2.08869 2.15087 2.65772 3.42688 3.55049 4.01523 4.15325 4.36159 4.39635 4.46326 4.63386 4.75925 4.81606 4.84341 4.91377 4.93726 5.06564 5.24946 5.35082 5.45179 5.58758 5.75959 5.87209 6.11213 6.20342 6.39188 6.65110 6.72943 6.81135 7.08596 8.19211 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.022424 B = 0.005177 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.383542 B = 5406.752211 C = 6471.353507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.071 3.929 3 C -0.321 4.321 4 S 0.190 5.810 5 C 0.243 3.757 6 N -0.621 5.621 7 C 0.552 3.448 8 O -0.522 6.522 9 C -0.264 4.264 10 C -0.040 4.040 11 C -0.224 4.224 12 C -0.055 4.055 13 C -0.241 4.241 14 C 0.107 3.893 15 C -0.438 4.438 16 H 0.068 0.932 17 C 0.039 3.961 18 N -0.843 5.843 19 Si 0.965 3.035 20 H -0.245 1.245 21 H -0.282 1.282 22 H -0.248 1.248 23 N -0.533 5.533 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.097 0.903 27 H 0.202 0.798 28 H 0.427 0.573 29 H 0.137 0.863 30 H 0.147 0.853 31 H 0.141 0.859 32 H 0.108 0.892 33 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.904 -5.416 1.480 13.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.061 4.061 3 C -0.461 4.461 4 S 0.440 5.560 5 C -0.124 4.124 6 N -0.273 5.273 7 C 0.346 3.654 8 O -0.399 6.399 9 C -0.269 4.269 10 C -0.058 4.058 11 C -0.243 4.243 12 C -0.073 4.073 13 C -0.260 4.260 14 C 0.103 3.897 15 C -0.467 4.467 16 H 0.086 0.914 17 C -0.176 4.176 18 N -0.469 5.469 19 Si 0.787 3.213 20 H -0.170 1.170 21 H -0.209 1.209 22 H -0.171 1.171 23 N -0.258 5.258 24 H 0.104 0.896 25 H 0.092 0.908 26 H 0.115 0.885 27 H 0.219 0.781 28 H 0.268 0.732 29 H 0.155 0.845 30 H 0.165 0.835 31 H 0.159 0.841 32 H 0.126 0.874 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.615 -4.407 1.482 11.588 hybrid contribution -0.326 -0.214 0.198 0.437 sum -10.941 -4.621 1.681 11.995 Atomic orbital electron populations 1.20436 0.84431 1.04234 1.03813 1.20492 0.99304 0.85632 1.00627 1.27495 0.97092 1.04989 1.16545 1.85493 1.04479 0.97672 1.68357 1.23601 0.90753 0.95030 1.02986 1.42871 1.04022 1.08400 1.72011 1.18907 0.80658 0.90206 0.75634 1.90743 1.76608 1.23392 1.49153 1.19357 0.92679 0.92141 1.22758 1.21242 0.99852 0.90789 0.93925 1.20961 0.92516 0.99135 1.11668 1.21320 0.96639 0.95691 0.93692 1.21324 0.98592 0.93432 1.12659 1.17733 0.91127 0.93265 0.87564 1.19755 1.05183 0.96189 1.25555 0.91375 1.27031 0.95634 0.97356 0.97588 1.69589 1.19349 1.20972 1.36986 0.85536 0.79160 0.78450 0.78122 1.16952 1.20919 1.17120 1.66280 1.01867 1.33677 1.23979 0.89647 0.90793 0.88452 0.78124 0.73151 0.84503 0.83539 0.84134 0.87422 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.28 10.31 71.24 0.73 -0.55 16 2 C 0.07 2.00 6.74 41.46 0.28 2.28 16 3 C -0.32 -8.92 11.11 66.74 0.74 -8.18 16 4 S 0.19 6.99 20.21 -56.49 -1.14 5.85 16 5 C 0.24 9.04 8.19 179.25 1.47 10.50 16 6 N -0.62 -22.81 5.35 -316.76 -1.69 -24.51 16 7 C 0.55 24.67 7.68 86.64 0.67 25.33 16 8 O -0.52 -27.26 11.13 -4.14 -0.05 -27.30 16 9 C -0.26 -11.60 5.92 -19.70 -0.12 -11.72 16 10 C -0.04 -1.34 9.52 22.51 0.21 -1.13 16 11 C -0.22 -6.97 10.03 22.40 0.22 -6.74 16 12 C -0.06 -1.89 10.01 22.26 0.22 -1.66 16 13 C -0.24 -10.31 6.94 22.72 0.16 -10.15 16 14 C 0.11 5.28 5.04 -21.10 -0.11 5.18 16 15 C -0.44 -24.79 8.08 23.41 0.19 -24.60 16 16 H 0.07 4.38 6.37 -2.91 -0.02 4.36 16 17 C 0.04 2.09 5.51 85.37 0.47 2.56 16 18 N -0.84 -47.13 13.92 21.88 0.30 -46.83 16 19 Si 0.96 41.49 24.48 68.60 1.68 43.17 16 20 H -0.24 -9.53 6.70 99.48 0.67 -8.86 16 21 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 22 H -0.25 -10.67 6.68 99.48 0.66 -10.01 16 23 N -0.53 -17.94 10.58 -189.70 -2.01 -19.95 16 24 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.10 1.29 8.12 -2.39 -0.02 1.27 16 27 H 0.20 4.07 8.06 -2.91 -0.02 4.05 16 28 H 0.43 12.80 6.87 -92.72 -0.64 12.16 16 29 H 0.14 3.54 6.43 -2.91 -0.02 3.52 16 30 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 31 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16 32 H 0.11 4.56 4.89 -2.91 -0.01 4.54 16 33 H 0.29 14.75 8.29 -92.71 -0.77 13.98 16 Total: -1.00 -67.41 292.64 2.69 -64.72 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 0.45 Total: 23.73 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: 5.14 Total: -18.88 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -3.40 Total: -91.29 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.05 Total: -27.30 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 1.68 Total: 43.17 kcal Atomic # 16 Polarization: 6.99 SS G_CDS: -1.14 Total: 5.85 kcal Total: -67.41 2.69 -64.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058248482.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.811 kcal (2) G-P(sol) polarization free energy of solvation -67.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds