Wall clock time and date at job start Tue Mar 31 2020 05:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99930 * 2 1 4 4 H 1.48495 * 109.46978 * 239.99864 * 3 2 1 5 5 H 1.48498 * 109.46856 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46785 * 119.99994 * 3 2 1 7 7 C 1.37878 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00029 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47007 * 180.02562 * 9 7 2 11 11 O 1.45196 * 109.46871 * 179.97438 * 10 9 7 12 12 C 1.34709 * 116.99760 * 180.02562 * 11 10 9 13 13 O 1.21468 * 120.00425 * 359.97438 * 12 11 10 14 14 C 1.47733 * 120.00010 * 180.02562 * 12 11 10 15 15 C 1.39648 * 120.14556 * 359.97438 * 14 12 11 16 16 C 1.37925 * 119.84421 * 179.70537 * 15 14 12 17 17 C 1.38393 * 120.14992 * 0.29812 * 16 15 14 18 18 C 1.38337 * 120.30240 * 359.97438 * 17 16 15 19 19 C 1.37966 * 120.15571 * 359.97438 * 18 17 16 20 20 C 1.50700 * 120.07944 * 180.02562 * 19 18 17 21 21 F 1.39893 * 109.47131 * 0.02562 * 20 19 18 22 22 F 1.39903 * 109.46460 * 120.00496 * 20 19 18 23 23 F 1.39892 * 109.47375 * 240.00359 * 20 19 18 24 24 H 0.97000 * 119.99698 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.47304 * 59.99899 * 9 7 2 26 26 H 1.09001 * 109.46767 * 299.99486 * 9 7 2 27 27 H 1.08996 * 109.47309 * 59.99243 * 10 9 7 28 28 H 1.09001 * 109.46783 * 299.99287 * 10 9 7 29 29 H 1.08002 * 120.08118 * 359.97438 * 15 14 12 30 30 H 1.07999 * 119.92353 * 180.28322 * 16 15 14 31 31 H 1.08005 * 119.84500 * 179.97438 * 17 16 15 32 32 H 1.08004 * 119.92237 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0018 11 8 1.5194 -4.9195 0.0024 12 6 2.2531 -6.0493 0.0041 13 8 3.4661 -5.9857 0.0046 14 6 1.5824 -7.3656 0.0043 15 6 0.1881 -7.4423 0.0032 16 6 -0.4316 -8.6745 -0.0028 17 6 0.3253 -9.8331 -0.0016 18 6 1.7069 -9.7643 0.0052 19 6 2.3398 -8.5384 0.0102 20 6 3.8450 -8.4655 0.0170 21 9 4.3746 -9.7603 0.0164 22 9 4.2838 -7.7820 -1.1222 23 9 4.2739 -7.7863 1.1623 24 1 -0.4850 0.8401 -0.0004 25 1 0.6248 -2.5572 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 2.8714 -3.6039 0.8922 28 1 2.8726 -3.6047 -0.8878 29 1 -0.4038 -6.5388 0.0027 30 1 -1.5098 -8.7353 -0.0083 31 1 -0.1651 -10.7954 -0.0059 32 1 2.2915 -10.6724 0.0066 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058817439.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:05 Heat of formation + Delta-G solvation = -215.070315 kcal Electronic energy + Delta-G solvation = -22608.449776 eV Core-core repulsion = 18505.182127 eV Total energy + Delta-G solvation = -4103.267649 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.99112 -47.57428 -47.31834 -40.46228 -38.94810 -36.20446 -33.39897 -32.30837 -31.88027 -30.19062 -26.47485 -25.22895 -24.04212 -22.39793 -21.22575 -20.70633 -18.73261 -18.27002 -18.16674 -17.57269 -16.64274 -16.09552 -16.07716 -15.42981 -15.08435 -14.76271 -14.49018 -14.35354 -14.13867 -13.93171 -13.54192 -13.51803 -13.46341 -13.09149 -12.84586 -12.72247 -12.37163 -11.97040 -11.54020 -11.27212 -11.09191 -10.76830 -10.73993 -10.35837 -9.71329 -9.67812 -9.61889 -9.43584 -9.34562 -8.45940 -6.12425 -4.16835 0.24767 0.74305 2.53241 2.62761 2.93145 3.29753 3.33579 3.35200 3.37280 3.72565 4.03877 4.36828 4.50065 4.52838 4.59360 4.66104 4.94174 5.02671 5.19546 5.24399 5.49550 5.76216 5.80125 5.94958 6.03934 6.05881 6.31277 6.59045 6.82652 7.50811 7.58262 7.82315 8.03383 8.21080 8.88250 9.47751 10.99028 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.026136 B = 0.003820 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.051617 B = 7328.204103 C = 8214.153086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.026 3.974 10 C 0.076 3.924 11 O -0.347 6.347 12 C 0.489 3.511 13 O -0.493 6.493 14 C -0.070 4.070 15 C -0.062 4.062 16 C -0.101 4.101 17 C -0.094 4.094 18 C -0.087 4.087 19 C -0.131 4.131 20 C 0.514 3.486 21 F -0.186 7.186 22 F -0.163 7.163 23 F -0.164 7.164 24 H 0.264 0.736 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.155 0.845 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.456 -22.063 0.006 22.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.004 3.996 11 O -0.263 6.263 12 C 0.332 3.668 13 O -0.383 6.383 14 C -0.071 4.071 15 C -0.080 4.080 16 C -0.119 4.119 17 C -0.112 4.112 18 C -0.105 4.105 19 C -0.133 4.133 20 C 0.460 3.540 21 F -0.167 7.167 22 F -0.145 7.145 23 F -0.145 7.145 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.173 0.827 30 H 0.159 0.841 31 H 0.158 0.842 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.206 -21.844 0.006 21.845 hybrid contribution 0.804 1.003 0.001 1.286 sum 0.597 -20.841 0.007 20.849 Atomic orbital electron populations 1.69960 1.06093 1.27131 1.49684 1.24970 0.94920 0.99374 0.94781 0.86522 0.79488 0.82413 0.78833 1.20042 1.21104 1.20035 1.20935 0.93196 0.90053 1.52387 0.92248 1.19175 0.94165 0.88918 0.98900 1.23750 0.96487 0.78063 1.01323 1.86543 1.41780 1.15470 1.82499 1.20970 0.85876 0.85659 0.74274 1.90900 1.14549 1.88088 1.44753 1.19081 0.94376 0.89938 1.03740 1.21676 0.92514 0.99723 0.94089 1.21459 1.01139 0.91846 0.97485 1.21422 0.93056 0.99429 0.97290 1.20992 0.95465 0.96213 0.97864 1.20142 0.91822 0.94850 1.06460 1.17931 0.87751 0.73178 0.75173 1.93134 1.88396 1.38792 1.96404 1.93248 1.90843 1.79747 1.50618 1.93242 1.91132 1.79965 1.50159 0.92640 0.95292 0.95300 0.91982 0.91977 0.82738 0.84055 0.84233 0.83691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.77 9.11 -34.44 -0.31 -15.08 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.03 0.66 5.35 -27.88 -0.15 0.51 16 10 C 0.08 1.68 5.41 37.16 0.20 1.89 16 11 O -0.35 -6.85 9.47 -40.52 -0.38 -7.23 16 12 C 0.49 8.91 7.71 34.61 0.27 9.18 16 13 O -0.49 -10.03 11.09 -19.24 -0.21 -10.25 16 14 C -0.07 -1.00 5.85 -104.98 -0.61 -1.61 16 15 C -0.06 -0.69 9.62 -39.17 -0.38 -1.07 16 16 C -0.10 -0.80 10.03 -39.64 -0.40 -1.20 16 17 C -0.09 -0.67 10.04 -39.49 -0.40 -1.06 16 18 C -0.09 -0.80 9.42 -39.64 -0.37 -1.17 16 19 C -0.13 -1.69 5.40 -104.21 -0.56 -2.25 16 20 C 0.51 7.54 2.78 36.01 0.10 7.64 16 21 F -0.19 -2.32 15.98 2.25 0.04 -2.29 16 22 F -0.16 -2.74 14.98 2.25 0.03 -2.70 16 23 F -0.16 -2.74 15.05 2.25 0.03 -2.71 16 24 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.15 1.69 7.61 -52.49 -0.40 1.29 16 30 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 31 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 32 H 0.15 1.02 7.15 -52.48 -0.38 0.64 16 LS Contribution 296.39 15.07 4.47 4.47 Total: -1.00 -31.70 296.39 -5.88 -37.57 By element: Atomic # 1 Polarization: -2.37 SS G_CDS: -2.85 Total: -5.23 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -2.71 Total: -2.58 kcal Atomic # 7 Polarization: -26.12 SS G_CDS: 0.74 Total: -25.38 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.60 Total: -17.48 kcal Atomic # 9 Polarization: -7.80 SS G_CDS: 0.10 Total: -7.70 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.70 -5.88 -37.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058817439.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.497 kcal (2) G-P(sol) polarization free energy of solvation -31.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds