Wall clock time and date at job start Tue Mar 31 2020 05:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99930 * 2 1 4 4 H 1.48495 * 109.46978 * 239.99864 * 3 2 1 5 5 H 1.48498 * 109.46856 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46785 * 119.99994 * 3 2 1 7 7 C 1.37878 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00029 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47007 * 180.02562 * 9 7 2 11 11 O 1.45196 * 109.46871 * 179.97438 * 10 9 7 12 12 C 1.34709 * 116.99760 * 180.02562 * 11 10 9 13 13 O 1.21468 * 120.00425 * 359.97438 * 12 11 10 14 14 C 1.47733 * 120.00010 * 180.02562 * 12 11 10 15 15 C 1.39648 * 120.14556 * 359.97438 * 14 12 11 16 16 C 1.37925 * 119.84421 * 179.70537 * 15 14 12 17 17 C 1.38393 * 120.14992 * 0.29812 * 16 15 14 18 18 C 1.38337 * 120.30240 * 359.97438 * 17 16 15 19 19 C 1.37966 * 120.15571 * 359.97438 * 18 17 16 20 20 C 1.50700 * 120.07944 * 180.02562 * 19 18 17 21 21 F 1.39893 * 109.47131 * 0.02562 * 20 19 18 22 22 F 1.39903 * 109.46460 * 120.00496 * 20 19 18 23 23 F 1.39892 * 109.47375 * 240.00359 * 20 19 18 24 24 H 0.97000 * 119.99698 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.47304 * 59.99899 * 9 7 2 26 26 H 1.09001 * 109.46767 * 299.99486 * 9 7 2 27 27 H 1.08996 * 109.47309 * 59.99243 * 10 9 7 28 28 H 1.09001 * 109.46783 * 299.99287 * 10 9 7 29 29 H 1.08002 * 120.08118 * 359.97438 * 15 14 12 30 30 H 1.07999 * 119.92353 * 180.28322 * 16 15 14 31 31 H 1.08005 * 119.84500 * 179.97438 * 17 16 15 32 32 H 1.08004 * 119.92237 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0018 11 8 1.5194 -4.9195 0.0024 12 6 2.2531 -6.0493 0.0041 13 8 3.4661 -5.9857 0.0046 14 6 1.5824 -7.3656 0.0043 15 6 0.1881 -7.4423 0.0032 16 6 -0.4316 -8.6745 -0.0028 17 6 0.3253 -9.8331 -0.0016 18 6 1.7069 -9.7643 0.0052 19 6 2.3398 -8.5384 0.0102 20 6 3.8450 -8.4655 0.0170 21 9 4.3746 -9.7603 0.0164 22 9 4.2838 -7.7820 -1.1222 23 9 4.2739 -7.7863 1.1623 24 1 -0.4850 0.8401 -0.0004 25 1 0.6248 -2.5572 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 2.8714 -3.6039 0.8922 28 1 2.8726 -3.6047 -0.8878 29 1 -0.4038 -6.5388 0.0027 30 1 -1.5098 -8.7353 -0.0083 31 1 -0.1651 -10.7954 -0.0059 32 1 2.2915 -10.6724 0.0066 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058817439.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:05 Heat of formation + Delta-G solvation = -232.789634 kcal Electronic energy + Delta-G solvation = -22609.218144 eV Core-core repulsion = 18505.182127 eV Total energy + Delta-G solvation = -4104.036017 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -51.13578 -48.68838 -48.54907 -41.74831 -39.98848 -37.77157 -35.48351 -33.15759 -32.96023 -32.01234 -27.68612 -26.91397 -25.21471 -23.51032 -22.83183 -22.11695 -19.81197 -19.44739 -19.27888 -18.99640 -18.23059 -17.77057 -17.65920 -16.57450 -16.16413 -16.07464 -15.63569 -15.60316 -15.24161 -15.23010 -14.86826 -14.78542 -14.73364 -14.41639 -14.32315 -13.91507 -13.73800 -13.14792 -13.11210 -12.80480 -12.62020 -12.60453 -12.34590 -11.92309 -11.58001 -11.54085 -11.42101 -10.62095 -10.39563 -10.25947 -8.28380 -6.41517 -0.68532 -0.01613 1.36107 1.38687 1.43894 1.46112 1.53294 1.67344 2.38834 2.45450 2.68143 3.02902 3.06121 3.38722 3.46073 3.71242 3.97662 4.17395 4.18103 4.19609 4.21682 4.38772 4.64426 4.76085 4.97429 5.11373 5.17285 5.26324 5.43681 5.43973 5.64509 5.70560 6.04528 6.52171 6.71052 7.28106 8.83934 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.026136 B = 0.003820 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.051617 B = 7328.204103 C = 8214.153086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.554 4.554 8 H 0.063 0.937 9 C 0.034 3.966 10 C 0.092 3.908 11 O -0.351 6.351 12 C 0.484 3.516 13 O -0.523 6.523 14 C -0.104 4.104 15 C -0.067 4.067 16 C -0.088 4.088 17 C -0.068 4.068 18 C -0.081 4.081 19 C -0.146 4.146 20 C 0.507 3.493 21 F -0.173 7.173 22 F -0.182 7.182 23 F -0.182 7.182 24 H 0.269 0.731 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.149 0.851 30 H 0.181 0.819 31 H 0.189 0.811 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.521 -24.093 -0.002 24.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.190 4.190 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.591 4.591 8 H 0.081 0.919 9 C -0.003 4.003 10 C 0.019 3.981 11 O -0.268 6.268 12 C 0.330 3.670 13 O -0.414 6.414 14 C -0.105 4.105 15 C -0.086 4.086 16 C -0.105 4.105 17 C -0.085 4.085 18 C -0.099 4.099 19 C -0.148 4.148 20 C 0.453 3.547 21 F -0.155 7.155 22 F -0.163 7.163 23 F -0.164 7.164 24 H 0.077 0.923 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.167 0.833 30 H 0.198 0.802 31 H 0.206 0.794 32 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.272 -23.900 -0.002 23.933 hybrid contribution 1.057 1.447 0.004 1.792 sum -0.215 -22.452 0.002 22.453 Atomic orbital electron populations 1.70073 1.07702 1.28384 1.50157 1.25917 0.95846 1.03237 0.93959 0.85399 0.78244 0.77566 0.79245 1.19183 1.20245 1.19175 1.21330 0.93655 0.91294 1.52871 0.91919 1.18967 0.94225 0.90217 0.96929 1.23239 0.95242 0.78607 1.01023 1.86520 1.41723 1.15375 1.83134 1.21809 0.85845 0.86357 0.73002 1.90872 1.15792 1.88425 1.46315 1.18930 0.95693 0.87766 1.08113 1.21795 0.91095 1.01456 0.94212 1.21913 1.03110 0.90404 0.95109 1.22013 0.91911 1.01192 0.93391 1.21405 0.96845 0.95289 0.96377 1.20147 0.90235 0.95911 1.08481 1.18280 0.89217 0.73190 0.74032 1.93143 1.88448 1.37584 1.96278 1.93199 1.91242 1.80356 1.51550 1.93194 1.91521 1.80565 1.51095 0.92250 0.97197 0.97210 0.92252 0.92240 0.83333 0.80204 0.79352 0.81255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.07 13.29 21.45 0.28 -54.79 16 2 C 0.01 0.56 5.46 84.65 0.46 1.02 16 3 Si 0.97 43.85 29.54 68.60 2.03 45.88 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.55 -31.74 9.11 25.60 0.23 -31.51 16 8 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.03 1.83 5.35 29.85 0.16 1.99 16 10 C 0.09 4.28 5.41 71.98 0.39 4.67 16 11 O -0.35 -14.58 9.47 -56.18 -0.53 -15.11 16 12 C 0.48 18.48 7.71 70.33 0.54 19.02 16 13 O -0.52 -22.42 11.09 19.94 0.22 -22.20 16 14 C -0.10 -2.96 5.85 -20.10 -0.12 -3.08 16 15 C -0.07 -1.41 9.62 22.54 0.22 -1.20 16 16 C -0.09 -1.00 10.03 22.23 0.22 -0.78 16 17 C -0.07 -0.59 10.04 22.33 0.22 -0.37 16 18 C -0.08 -1.20 9.42 22.23 0.21 -0.99 16 19 C -0.15 -3.63 5.40 -19.60 -0.11 -3.74 16 20 C 0.51 15.05 2.78 71.24 0.20 15.25 16 21 F -0.17 -4.19 15.98 44.97 0.72 -3.47 16 22 F -0.18 -6.35 14.98 44.97 0.67 -5.68 16 23 F -0.18 -6.35 15.05 44.97 0.68 -5.68 16 24 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 25 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 28 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.15 3.21 7.61 -2.91 -0.02 3.19 16 30 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16 31 H 0.19 -0.04 8.06 -2.91 -0.02 -0.07 16 32 H 0.17 1.64 7.15 -2.91 -0.02 1.62 16 Total: -1.00 -72.26 296.39 7.86 -64.40 By element: Atomic # 1 Polarization: -4.79 SS G_CDS: 1.16 Total: -3.63 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 2.64 Total: 0.29 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 0.28 Total: -54.79 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -0.31 Total: -37.32 kcal Atomic # 9 Polarization: -16.89 SS G_CDS: 2.07 Total: -14.82 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -72.26 7.86 -64.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058817439.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.391 kcal (2) G-P(sol) polarization free energy of solvation -72.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds