Wall clock time and date at job start Tue Mar 31 2020 05:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00140 * 2 1 4 4 H 1.48500 * 109.46915 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46868 * 299.99846 * 3 2 1 6 6 H 1.48496 * 109.47045 * 59.99920 * 3 2 1 7 7 C 1.37883 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00147 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99631 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46781 * 179.97438 * 9 7 2 11 11 O 1.45199 * 109.46906 * 179.97438 * 10 9 7 12 12 C 1.34797 * 116.99921 * 180.02562 * 11 10 9 13 13 O 1.21543 * 119.99842 * 0.02562 * 12 11 10 14 14 C 1.47110 * 119.99873 * 180.02562 * 12 11 10 15 15 C 1.38511 * 120.60521 * 0.02562 * 14 12 11 16 16 C 1.41755 * 118.70295 * 180.27732 * 15 14 12 17 17 C 1.40335 * 120.19859 * 180.33221 * 16 15 14 18 18 C 1.36485 * 119.87676 * 179.71355 * 17 16 15 19 19 C 1.38823 * 120.47242 * 359.71924 * 18 17 16 20 20 C 1.37855 * 120.63379 * 359.97438 * 19 18 17 21 21 C 1.39079 * 120.00030 * 0.02562 * 20 19 18 22 22 O 1.35013 * 119.86651 * 180.02562 * 21 20 19 23 23 C 1.34338 * 121.44342 * 179.97438 * 22 21 20 24 24 O 1.21674 * 119.93120 * 179.97438 * 23 22 21 25 25 H 0.96995 * 119.99971 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47118 * 60.00162 * 9 7 2 27 27 H 1.09001 * 109.47688 * 299.99791 * 9 7 2 28 28 H 1.08999 * 109.47056 * 60.00761 * 10 9 7 29 29 H 1.08988 * 109.47174 * 300.00205 * 10 9 7 30 30 H 1.08002 * 120.64415 * 359.97438 * 15 14 12 31 31 H 1.08001 * 120.05943 * 359.43500 * 17 16 15 32 32 H 1.08002 * 119.76428 * 179.73726 * 18 17 16 33 33 H 1.07998 * 119.68167 * 179.97438 * 19 18 17 34 34 H 1.08005 * 120.00270 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5193 -4.9196 0.0011 12 6 2.2534 -6.0501 0.0018 13 8 3.4672 -5.9864 0.0023 14 6 1.5855 -7.3608 0.0018 15 6 0.2032 -7.4479 0.0007 16 6 -0.3982 -8.7316 0.0069 17 6 -1.7959 -8.8563 -0.0011 18 6 -2.3679 -10.0955 -0.0010 19 6 -1.5766 -11.2362 0.0010 20 6 -0.2016 -11.1372 0.0024 21 6 0.4055 -9.8859 0.0024 22 8 1.7524 -9.7921 0.0033 23 6 2.3718 -8.6001 0.0028 24 8 3.5874 -8.5476 0.0041 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5568 0.8903 28 1 2.8719 -3.6044 0.8906 29 1 2.8719 -3.6044 -0.8893 30 1 -0.4046 -6.5551 0.0002 31 1 -2.4179 -7.9734 -0.0027 32 1 -3.4438 -10.1894 -0.0028 33 1 -2.0427 -12.2104 0.0014 34 1 0.4042 -12.0313 0.0036 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058817591.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:04 Heat of formation + Delta-G solvation = -117.753961 kcal Electronic energy + Delta-G solvation = -21275.907532 eV Core-core repulsion = 17718.716577 eV Total energy + Delta-G solvation = -3557.190955 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.12652 -39.85355 -39.13449 -37.43980 -35.94187 -35.05008 -33.35250 -31.38178 -30.69328 -30.02413 -25.90548 -24.95903 -24.40860 -23.42957 -21.87054 -20.82477 -19.85917 -18.36508 -17.74472 -17.04242 -16.94530 -16.17660 -16.01527 -15.84739 -15.62626 -15.15492 -15.01370 -14.50547 -14.16385 -13.77329 -13.47405 -13.33212 -12.87940 -12.45385 -12.39098 -12.29592 -11.86998 -11.30471 -11.07352 -11.00642 -10.77651 -10.72980 -10.64321 -10.16239 -9.67670 -9.64710 -9.31420 -9.31355 -8.77368 -8.47101 -6.13492 -4.17327 -0.45704 0.62756 1.16996 1.94088 2.14716 2.95621 2.96037 3.26574 3.34171 3.39722 3.40638 3.70521 3.94558 4.09904 4.30402 4.38493 4.59479 4.65311 4.83574 5.11420 5.19660 5.23675 5.29966 5.39622 5.62806 5.72382 5.82694 6.06021 6.07989 6.09469 6.60318 6.81868 6.92190 7.23342 7.52182 7.57927 7.83989 8.14291 8.22601 8.88333 9.47362 10.98102 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.025987 B = 0.003205 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.208907 B = 8734.014102 C = 9790.776083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.525 4.525 8 H 0.061 0.939 9 C 0.025 3.975 10 C 0.077 3.923 11 O -0.356 6.356 12 C 0.508 3.492 13 O -0.484 6.484 14 C -0.244 4.244 15 C 0.067 3.933 16 C -0.169 4.169 17 C -0.039 4.039 18 C -0.149 4.149 19 C -0.051 4.051 20 C -0.142 4.142 21 C 0.162 3.838 22 O -0.263 6.263 23 C 0.523 3.477 24 O -0.418 6.418 25 H 0.263 0.737 26 H 0.029 0.971 27 H 0.029 0.971 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.171 0.829 31 H 0.146 0.854 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.996 -23.378 -0.010 25.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.079 0.921 9 C -0.012 4.012 10 C 0.005 3.995 11 O -0.273 6.273 12 C 0.351 3.649 13 O -0.372 6.372 14 C -0.247 4.247 15 C 0.048 3.952 16 C -0.170 4.170 17 C -0.057 4.057 18 C -0.167 4.167 19 C -0.069 4.069 20 C -0.161 4.161 21 C 0.116 3.884 22 O -0.175 6.175 23 C 0.366 3.634 24 O -0.300 6.300 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.189 0.811 31 H 0.164 0.836 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -8.015 -23.309 -0.009 24.649 hybrid contribution 0.457 1.118 -0.001 1.208 sum -7.558 -22.191 -0.010 23.443 Atomic orbital electron populations 1.69974 1.06089 1.26904 1.49963 1.24977 0.94928 0.99410 0.94823 0.86410 0.80126 0.83075 0.77696 1.19544 1.20819 1.20823 1.21023 0.93305 0.90031 1.52001 0.92120 1.19187 0.94181 0.88961 0.98855 1.23718 0.96472 0.78001 1.01328 1.86525 1.41989 1.15422 1.83375 1.20007 0.85692 0.84427 0.74755 1.90911 1.14349 1.87816 1.44113 1.21556 0.93873 0.92468 1.16789 1.22738 0.93781 0.97682 0.80998 1.18230 0.95152 0.92153 1.11467 1.21221 0.91931 0.99206 0.93310 1.20979 1.01062 0.92048 1.02573 1.21315 0.92189 0.99703 0.93733 1.20677 0.95079 0.95094 1.05235 1.19323 0.79379 0.94550 0.95120 1.83729 1.19913 1.35966 1.77921 1.19889 0.87383 0.80323 0.75774 1.91061 1.11319 1.83851 1.43767 0.92767 0.95310 0.95301 0.92045 0.92034 0.81113 0.83609 0.84438 0.84094 0.83657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.53 -14.68 9.11 -34.44 -0.31 -15.00 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 9 C 0.03 0.65 5.35 -27.88 -0.15 0.50 16 10 C 0.08 1.72 5.42 37.16 0.20 1.92 16 11 O -0.36 -7.05 9.51 -40.76 -0.39 -7.43 16 12 C 0.51 9.79 7.89 34.33 0.27 10.06 16 13 O -0.48 -10.98 15.25 -26.32 -0.40 -11.38 16 14 C -0.24 -3.72 6.05 -102.75 -0.62 -4.34 16 15 C 0.07 0.74 9.45 -38.14 -0.36 0.38 16 16 C -0.17 -1.55 5.74 -106.85 -0.61 -2.16 16 17 C -0.04 -0.24 9.72 -39.43 -0.38 -0.62 16 18 C -0.15 -0.69 9.97 -40.00 -0.40 -1.09 16 19 C -0.05 -0.23 10.02 -39.51 -0.40 -0.63 16 20 C -0.14 -0.96 9.98 -39.41 -0.39 -1.35 16 21 C 0.16 1.60 6.75 -38.36 -0.26 1.34 16 22 O -0.26 -3.42 9.80 -21.02 -0.21 -3.62 16 23 C 0.52 8.40 8.13 34.18 0.28 8.67 16 24 O -0.42 -8.32 16.30 -26.44 -0.43 -8.75 16 25 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.06 1.37 8.14 -51.94 -0.42 0.95 16 30 H 0.17 1.61 7.65 -52.49 -0.40 1.20 16 31 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 32 H 0.14 0.31 8.06 -52.49 -0.42 -0.11 16 33 H 0.14 0.23 8.06 -52.49 -0.42 -0.19 16 34 H 0.15 0.74 8.06 -52.48 -0.42 0.32 16 LS Contribution 312.53 15.07 4.71 4.71 Total: -1.00 -34.82 312.53 -7.56 -42.38 By element: Atomic # 1 Polarization: -2.94 SS G_CDS: -3.32 Total: -6.26 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -3.23 Total: -0.71 kcal Atomic # 7 Polarization: -25.97 SS G_CDS: 0.74 Total: -25.24 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -1.43 Total: -31.19 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.82 -7.56 -42.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058817591.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.370 kcal (2) G-P(sol) polarization free energy of solvation -34.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds