Wall clock time and date at job start Tue Mar 31 2020 05:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00140 * 2 1 4 4 H 1.48500 * 109.46915 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46868 * 299.99846 * 3 2 1 6 6 H 1.48496 * 109.47045 * 59.99920 * 3 2 1 7 7 C 1.37883 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00147 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99631 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46781 * 179.97438 * 9 7 2 11 11 O 1.45199 * 109.46906 * 179.97438 * 10 9 7 12 12 C 1.34797 * 116.99921 * 180.02562 * 11 10 9 13 13 O 1.21543 * 119.99842 * 0.02562 * 12 11 10 14 14 C 1.47110 * 119.99873 * 180.02562 * 12 11 10 15 15 C 1.38511 * 120.60521 * 0.02562 * 14 12 11 16 16 C 1.41755 * 118.70295 * 180.27732 * 15 14 12 17 17 C 1.40335 * 120.19859 * 180.33221 * 16 15 14 18 18 C 1.36485 * 119.87676 * 179.71355 * 17 16 15 19 19 C 1.38823 * 120.47242 * 359.71924 * 18 17 16 20 20 C 1.37855 * 120.63379 * 359.97438 * 19 18 17 21 21 C 1.39079 * 120.00030 * 0.02562 * 20 19 18 22 22 O 1.35013 * 119.86651 * 180.02562 * 21 20 19 23 23 C 1.34338 * 121.44342 * 179.97438 * 22 21 20 24 24 O 1.21674 * 119.93120 * 179.97438 * 23 22 21 25 25 H 0.96995 * 119.99971 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47118 * 60.00162 * 9 7 2 27 27 H 1.09001 * 109.47688 * 299.99791 * 9 7 2 28 28 H 1.08999 * 109.47056 * 60.00761 * 10 9 7 29 29 H 1.08988 * 109.47174 * 300.00205 * 10 9 7 30 30 H 1.08002 * 120.64415 * 359.97438 * 15 14 12 31 31 H 1.08001 * 120.05943 * 359.43500 * 17 16 15 32 32 H 1.08002 * 119.76428 * 179.73726 * 18 17 16 33 33 H 1.07998 * 119.68167 * 179.97438 * 19 18 17 34 34 H 1.08005 * 120.00270 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5193 -4.9196 0.0011 12 6 2.2534 -6.0501 0.0018 13 8 3.4672 -5.9864 0.0023 14 6 1.5855 -7.3608 0.0018 15 6 0.2032 -7.4479 0.0007 16 6 -0.3982 -8.7316 0.0069 17 6 -1.7959 -8.8563 -0.0011 18 6 -2.3679 -10.0955 -0.0010 19 6 -1.5766 -11.2362 0.0010 20 6 -0.2016 -11.1372 0.0024 21 6 0.4055 -9.8859 0.0024 22 8 1.7524 -9.7921 0.0033 23 6 2.3718 -8.6001 0.0028 24 8 3.5874 -8.5476 0.0041 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6240 -2.5568 0.8903 28 1 2.8719 -3.6044 0.8906 29 1 2.8719 -3.6044 -0.8893 30 1 -0.4046 -6.5551 0.0002 31 1 -2.4179 -7.9734 -0.0027 32 1 -3.4438 -10.1894 -0.0028 33 1 -2.0427 -12.2104 0.0014 34 1 0.4042 -12.0313 0.0036 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058817591.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:03 Heat of formation + Delta-G solvation = -138.011804 kcal Electronic energy + Delta-G solvation = -21276.785978 eV Core-core repulsion = 17718.716577 eV Total energy + Delta-G solvation = -3558.069401 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.07112 -41.34036 -40.03652 -38.48690 -37.56781 -36.00307 -35.40221 -32.47152 -31.87433 -31.19193 -27.41469 -26.28820 -25.51878 -24.22256 -23.22495 -22.53848 -20.73824 -19.52435 -18.86502 -18.52783 -18.14512 -17.88195 -17.44997 -17.10877 -16.49107 -16.48816 -16.03997 -15.72782 -15.15268 -14.84048 -14.66406 -14.49462 -14.39141 -14.24247 -13.42288 -13.15379 -13.09049 -12.87999 -12.63493 -12.59454 -12.45783 -12.01317 -11.82328 -11.75656 -11.52548 -11.46727 -11.30279 -10.61358 -9.89140 -9.62158 -8.27881 -6.39930 -1.32896 -0.02830 0.46561 0.89720 0.92991 1.41179 1.41358 1.54349 1.65476 1.87621 2.39486 2.64633 2.73059 3.06813 3.19506 3.22339 3.66836 3.86828 4.16180 4.19416 4.19676 4.25101 4.35664 4.37275 4.51869 4.66853 4.87809 4.96343 5.16948 5.25470 5.35403 5.45231 5.46916 5.60960 5.72652 5.92450 6.06714 6.15344 6.61775 6.72836 7.29397 8.84726 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.025987 B = 0.003205 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.208907 B = 8734.014102 C = 9790.776083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.010 3.990 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.552 4.552 8 H 0.060 0.940 9 C 0.035 3.965 10 C 0.091 3.909 11 O -0.351 6.351 12 C 0.512 3.488 13 O -0.531 6.531 14 C -0.303 4.303 15 C 0.125 3.875 16 C -0.196 4.196 17 C -0.028 4.028 18 C -0.141 4.141 19 C -0.022 4.022 20 C -0.152 4.152 21 C 0.137 3.863 22 O -0.266 6.266 23 C 0.528 3.472 24 O -0.481 6.481 25 H 0.269 0.731 26 H 0.013 0.987 27 H 0.013 0.987 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.191 0.809 31 H 0.172 0.828 32 H 0.175 0.825 33 H 0.183 0.817 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.469 -24.953 -0.015 27.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.189 4.189 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.590 4.590 8 H 0.079 0.921 9 C -0.002 4.002 10 C 0.018 3.982 11 O -0.268 6.268 12 C 0.358 3.642 13 O -0.422 6.422 14 C -0.306 4.306 15 C 0.107 3.893 16 C -0.196 4.196 17 C -0.045 4.045 18 C -0.158 4.158 19 C -0.040 4.040 20 C -0.170 4.170 21 C 0.092 3.908 22 O -0.178 6.178 23 C 0.376 3.624 24 O -0.368 6.368 25 H 0.078 0.922 26 H 0.032 0.968 27 H 0.032 0.968 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.208 0.792 31 H 0.190 0.810 32 H 0.193 0.807 33 H 0.200 0.800 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.544 -24.918 -0.013 27.462 hybrid contribution 1.108 1.289 -0.001 1.700 sum -10.436 -23.629 -0.014 25.831 Atomic orbital electron populations 1.70069 1.07552 1.28225 1.50328 1.25880 0.95869 1.03101 0.94059 0.85317 0.78783 0.78336 0.78123 1.19103 1.19908 1.19921 1.21386 0.93619 0.91377 1.52578 0.92145 1.18979 0.94157 0.89858 0.97230 1.23265 0.95427 0.78534 1.00991 1.86490 1.41504 1.15039 1.83782 1.20617 0.85396 0.85117 0.73080 1.90874 1.16255 1.88258 1.46815 1.20993 0.95236 0.89866 1.24478 1.23069 0.91966 0.99594 0.74665 1.18367 0.96679 0.90734 1.13863 1.21622 0.90297 1.01331 0.91284 1.21507 1.03027 0.91079 1.00218 1.21908 0.90892 1.01781 0.89378 1.21043 0.96461 0.94203 1.05304 1.19959 0.78025 0.96430 0.96350 1.83676 1.22083 1.34316 1.77711 1.19893 0.86905 0.81105 0.74528 1.91007 1.13532 1.84935 1.47358 0.92249 0.96823 0.96818 0.92422 0.92404 0.79209 0.81048 0.80712 0.80021 0.82292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.11 13.29 21.45 0.28 -53.83 16 2 C 0.01 0.58 5.46 84.66 0.46 1.04 16 3 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.55 -31.44 9.11 25.60 0.23 -31.21 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.03 1.85 5.35 29.85 0.16 2.01 16 10 C 0.09 4.25 5.42 71.98 0.39 4.64 16 11 O -0.35 -14.50 9.51 -57.08 -0.54 -15.04 16 12 C 0.51 21.05 7.89 70.15 0.55 21.60 16 13 O -0.53 -26.11 15.25 26.40 0.40 -25.71 16 14 C -0.30 -9.75 6.05 -18.65 -0.11 -9.87 16 15 C 0.13 2.67 9.45 23.20 0.22 2.89 16 16 C -0.20 -3.12 5.74 -21.31 -0.12 -3.25 16 17 C -0.03 -0.21 9.72 22.37 0.22 0.01 16 18 C -0.14 -0.42 9.97 22.00 0.22 -0.20 16 19 C -0.02 -0.07 10.02 22.32 0.22 0.15 16 20 C -0.15 -1.53 9.98 22.38 0.22 -1.31 16 21 C 0.14 2.51 6.75 23.06 0.16 2.66 16 22 O -0.27 -7.19 9.80 13.63 0.13 -7.05 16 23 C 0.53 18.37 8.13 70.05 0.57 18.94 16 24 O -0.48 -21.16 16.30 26.00 0.42 -20.74 16 25 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 26 H 0.01 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 29 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 30 H 0.19 3.21 7.65 -2.91 -0.02 3.19 16 31 H 0.17 0.46 8.06 -2.91 -0.02 0.44 16 32 H 0.18 -0.59 8.06 -2.91 -0.02 -0.61 16 33 H 0.18 -0.75 8.06 -2.91 -0.02 -0.78 16 34 H 0.16 1.15 8.06 -2.91 -0.02 1.12 16 Total: -1.00 -81.79 312.53 7.25 -74.54 By element: Atomic # 1 Polarization: -7.18 SS G_CDS: 1.13 Total: -6.05 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 3.39 Total: 8.12 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.28 Total: -53.83 kcal Atomic # 8 Polarization: -68.96 SS G_CDS: 0.42 Total: -68.54 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -81.79 7.25 -74.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058817591.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.475 kcal (2) G-P(sol) polarization free energy of solvation -81.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds