Wall clock time and date at job start Tue Mar 31 2020 06:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86789 * 119.99959 * 2 1 4 4 H 1.48502 * 109.47230 * 269.99794 * 3 2 1 5 5 H 1.48497 * 109.47395 * 30.00101 * 3 2 1 6 6 H 1.48504 * 109.47292 * 149.99945 * 3 2 1 7 7 C 1.37874 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00647 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99775 * 180.02562 * 7 2 1 10 10 N 1.46507 * 109.47094 * 179.97438 * 9 7 2 11 11 C 1.34771 * 120.00126 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99826 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00199 * 180.02562 * 11 10 9 14 14 N 1.46504 * 109.46868 * 179.97438 * 13 11 10 15 15 C 1.39987 * 119.99769 * 179.97438 * 14 13 11 16 16 C 1.38803 * 120.04288 * 0.02562 * 15 14 13 17 17 C 1.38337 * 119.94922 * 179.97438 * 16 15 14 18 18 F 1.35098 * 119.97878 * 180.02562 * 17 16 15 19 19 C 1.38661 * 120.04051 * 359.97438 * 17 16 15 20 20 F 1.35099 * 119.95228 * 179.97438 * 19 17 16 21 21 C 1.38418 * 120.09038 * 0.02562 * 19 17 16 22 22 C 1.38307 * 120.04820 * 0.25827 * 21 19 17 23 23 F 1.35102 * 120.02007 * 179.74457 * 22 21 19 24 24 H 0.96999 * 119.99777 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46890 * 60.00203 * 9 7 2 26 26 H 1.08997 * 109.46996 * 299.99734 * 9 7 2 27 27 H 0.96998 * 119.99990 * 0.02562 * 10 9 7 28 28 H 1.09000 * 109.47105 * 60.00395 * 13 11 10 29 29 H 1.08997 * 109.46890 * 299.99860 * 13 11 10 30 30 H 0.97002 * 120.00384 * 0.02562 * 14 13 11 31 31 H 1.07998 * 120.02398 * 359.97438 * 16 15 14 32 32 H 1.08002 * 119.97143 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 7 3.9999 -2.5753 0.0022 11 6 5.3249 -2.8217 0.0024 12 8 6.1131 -1.8998 0.0021 13 6 5.8273 -4.2425 0.0030 14 7 7.2923 -4.2424 0.0024 15 6 7.9922 -5.4547 0.0033 16 6 7.2991 -6.6573 0.0042 17 6 7.9928 -7.8542 0.0046 18 9 7.3188 -9.0250 0.0049 19 6 9.3794 -7.8529 0.0035 20 9 10.0550 -9.0228 0.0044 21 6 10.0723 -6.6546 0.0026 22 6 9.3825 -5.4558 0.0082 23 9 10.0594 -4.2866 0.0125 24 1 -0.4850 0.8401 0.0004 25 1 3.8745 -0.6801 0.8912 26 1 3.8752 -0.6805 -0.8888 27 1 3.3696 -3.3126 0.0021 28 1 5.4640 -4.7566 -0.8869 29 1 5.4639 -4.7559 0.8931 30 1 7.7773 -3.4023 0.0022 31 1 6.2191 -6.6586 0.0046 32 1 11.1523 -6.6559 0.0022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061094143.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:49 Heat of formation + Delta-G solvation = -143.833427 kcal Electronic energy + Delta-G solvation = -21447.077991 eV Core-core repulsion = 17379.192157 eV Total energy + Delta-G solvation = -4067.885835 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.69274 -49.16182 -48.75483 -39.84071 -38.91678 -35.55156 -34.50516 -32.52879 -30.84901 -30.23270 -28.34689 -26.43585 -23.69898 -22.65470 -21.98035 -20.28141 -18.95562 -18.45099 -17.92124 -17.28978 -16.71668 -16.54949 -16.06035 -15.83236 -15.74119 -15.51464 -15.23779 -15.15975 -14.89644 -14.55801 -14.49649 -13.90484 -13.74109 -13.47683 -12.86653 -12.50699 -12.48957 -12.42274 -11.96196 -11.88444 -11.15906 -10.87824 -10.38930 -10.08571 -9.66607 -9.58689 -9.29371 -8.90558 -8.41557 -7.82515 -6.31633 -4.35375 0.47305 0.68170 2.72440 2.83335 2.91171 3.18987 3.26367 3.32949 3.45267 3.68103 3.77076 4.05122 4.10796 4.23708 4.63379 4.84385 5.03092 5.03688 5.08584 5.12568 5.27039 5.30647 5.46861 5.60929 6.21359 6.57980 6.69193 6.90281 6.94296 7.21372 7.29659 7.91881 8.30409 8.52231 8.68626 9.27083 10.80094 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.033122 B = 0.002943 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.169008 B = 9511.729939 C =10336.448484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.548 4.548 8 H 0.081 0.919 9 C 0.220 3.780 10 N -0.696 5.696 11 C 0.495 3.505 12 O -0.553 6.553 13 C 0.097 3.903 14 N -0.716 5.716 15 C 0.220 3.780 16 C -0.193 4.193 17 C 0.117 3.883 18 F -0.123 7.123 19 C 0.026 3.974 20 F -0.129 7.129 21 C -0.109 4.109 22 C 0.040 3.960 23 F -0.128 7.128 24 H 0.269 0.731 25 H 0.028 0.972 26 H 0.023 0.977 27 H 0.400 0.600 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.421 0.579 31 H 0.156 0.844 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.787 -15.138 0.032 22.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.586 4.586 8 H 0.099 0.901 9 C 0.098 3.902 10 N -0.344 5.344 11 C 0.279 3.721 12 O -0.432 6.432 13 C -0.031 4.031 14 N -0.347 5.347 15 C 0.112 3.888 16 C -0.217 4.217 17 C 0.096 3.904 18 F -0.102 7.102 19 C 0.003 3.997 20 F -0.108 7.108 21 C -0.130 4.130 22 C 0.016 3.984 23 F -0.107 7.107 24 H 0.079 0.921 25 H 0.046 0.954 26 H 0.041 0.959 27 H 0.234 0.766 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.261 0.739 31 H 0.174 0.826 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 16.925 -14.325 0.035 22.173 hybrid contribution 0.212 0.629 -0.024 0.664 sum 17.137 -13.696 0.012 21.938 Atomic orbital electron populations 1.69874 1.06222 1.27591 1.48930 1.24793 0.94807 0.99209 0.93738 0.86813 0.80521 0.83221 0.79103 1.19787 1.20787 1.18551 1.21049 0.88292 0.95345 1.53901 0.90114 1.19570 0.95491 0.78046 0.97055 1.46127 1.05187 1.11643 1.71455 1.20258 0.83824 0.90117 0.77919 1.90676 1.55382 1.45772 1.51377 1.21264 0.81067 0.96716 1.04011 1.44486 1.05137 1.05719 1.79314 1.17491 0.89159 0.87252 0.94901 1.20328 1.01419 0.88361 1.11598 1.17275 0.88015 0.82051 1.03080 1.91548 1.79907 1.45082 1.93620 1.16915 0.87895 0.82129 1.12715 1.91520 1.79726 1.44896 1.94645 1.20682 1.01717 0.88971 1.01586 1.16666 0.87519 0.81884 1.12339 1.91525 1.79587 1.45056 1.94498 0.92113 0.95431 0.95882 0.76570 0.88613 0.88610 0.73871 0.82592 0.82496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.58 13.96 55.43 0.77 -24.80 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.88 20.63 27.47 -169.99 -4.67 15.96 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 7 C -0.55 -14.25 9.83 -34.44 -0.34 -14.59 16 8 H 0.08 2.18 7.84 -52.49 -0.41 1.76 16 9 C 0.22 5.03 4.50 -5.19 -0.02 5.01 16 10 N -0.70 -12.36 5.55 -61.47 -0.34 -12.70 16 11 C 0.50 8.03 7.90 -10.99 -0.09 7.95 16 12 O -0.55 -11.09 15.67 5.56 0.09 -11.01 16 13 C 0.10 1.05 5.40 -5.19 -0.03 1.02 16 14 N -0.72 -8.21 5.71 -59.72 -0.34 -8.55 16 15 C 0.22 2.24 6.66 -83.63 -0.56 1.69 16 16 C -0.19 -1.74 9.29 -39.34 -0.37 -2.10 16 17 C 0.12 1.14 7.30 -39.39 -0.29 0.86 16 18 F -0.12 -1.30 17.18 2.25 0.04 -1.27 16 19 C 0.03 0.25 7.30 -39.36 -0.29 -0.03 16 20 F -0.13 -1.37 17.18 2.25 0.04 -1.33 16 21 C -0.11 -0.95 9.99 -39.49 -0.39 -1.35 16 22 C 0.04 0.41 7.31 -39.26 -0.29 0.12 16 23 F -0.13 -1.44 16.64 2.25 0.04 -1.40 16 24 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 26 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 27 H 0.40 6.01 8.32 -40.82 -0.34 5.67 16 28 H 0.10 0.82 7.95 -51.93 -0.41 0.41 16 29 H 0.10 0.82 7.95 -51.93 -0.41 0.41 16 30 H 0.42 5.52 6.92 -40.82 -0.28 5.24 16 31 H 0.16 1.12 6.74 -52.49 -0.35 0.77 16 32 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 297.91 15.07 4.49 4.49 Total: -1.00 -30.34 297.91 -5.21 -35.54 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -2.57 Total: 4.44 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -2.75 Total: 0.62 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 0.09 Total: -46.05 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.11 Total: -4.00 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.96 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.34 -5.21 -35.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061094143.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.289 kcal (2) G-P(sol) polarization free energy of solvation -30.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds