Wall clock time and date at job start Tue Mar 31 2020 06:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99696 * 2 1 4 4 H 1.48501 * 109.47099 * 239.99732 * 3 2 1 5 5 H 1.48497 * 109.47322 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47056 * 119.99703 * 3 2 1 7 7 C 1.37868 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00291 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00274 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47543 * 179.97438 * 9 7 2 11 11 C 1.34783 * 119.99943 * 179.97438 * 10 9 7 12 12 O 1.21275 * 119.99914 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99600 * 179.97438 * 11 10 9 14 14 N 1.46498 * 109.46769 * 179.97438 * 13 11 10 15 15 C 1.39803 * 119.99941 * 179.72228 * 14 13 11 16 16 C 1.38862 * 120.02690 * 0.02562 * 15 14 13 17 17 C 1.38351 * 119.96612 * 179.74057 * 16 15 14 18 18 F 1.35103 * 119.98257 * 180.25227 * 17 16 15 19 19 C 1.38609 * 120.03328 * 0.53008 * 17 16 15 20 20 F 1.35091 * 119.97354 * 179.70287 * 19 17 16 21 21 C 1.38616 * 120.05592 * 359.72224 * 19 17 16 22 22 F 1.35100 * 119.98517 * 180.02562 * 21 19 17 23 23 C 1.38343 * 120.03131 * 0.02562 * 21 19 17 24 24 H 0.97004 * 120.00287 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47280 * 59.98954 * 9 7 2 26 26 H 1.09008 * 109.46977 * 299.99483 * 9 7 2 27 27 H 0.96995 * 119.99612 * 359.97438 * 10 9 7 28 28 H 1.09004 * 109.47210 * 60.00194 * 13 11 10 29 29 H 1.08994 * 109.47121 * 300.00164 * 13 11 10 30 30 H 0.97001 * 120.00384 * 0.02562 * 14 13 11 31 31 H 1.08000 * 120.01924 * 359.97438 * 16 15 14 32 32 H 1.08003 * 120.02001 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5615 -5.1049 0.0020 13 6 2.7332 -6.0287 0.0005 14 7 2.0008 -7.2974 0.0018 15 6 2.6998 -8.5081 -0.0043 16 6 4.0884 -8.5088 -0.0111 17 6 4.7789 -9.7076 -0.0117 18 9 6.1299 -9.7086 -0.0132 19 6 4.0853 -10.9077 -0.0166 20 9 4.7608 -12.0776 -0.0233 21 6 2.6992 -10.9084 -0.0151 22 9 2.0246 -12.0790 -0.0194 23 6 2.0062 -9.7111 -0.0092 24 1 -0.4851 0.8401 0.0004 25 1 0.6247 -2.5570 -0.8895 26 1 0.6242 -2.5567 0.8904 27 1 3.1568 -3.4353 0.0002 28 1 3.3606 -5.9708 0.8900 29 1 3.3592 -5.9710 -0.8899 30 1 1.0308 -7.2975 0.0025 31 1 4.6291 -7.5739 -0.0121 32 1 0.9261 -9.7119 -0.0085 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061095865.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:50 Heat of formation + Delta-G solvation = -147.862232 kcal Electronic energy + Delta-G solvation = -21253.465269 eV Core-core repulsion = 17185.404732 eV Total energy + Delta-G solvation = -4068.060537 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.84006 -49.38395 -48.51373 -39.89398 -38.85639 -35.32373 -34.38381 -32.53029 -30.92465 -30.02914 -27.95905 -26.21171 -23.70740 -22.89065 -22.14234 -20.12780 -18.94879 -18.26521 -17.73631 -17.37933 -16.88994 -16.30119 -16.15680 -15.66010 -15.56494 -15.52608 -15.16518 -15.15620 -14.99059 -14.77626 -14.42399 -13.94707 -13.70115 -13.01223 -12.77500 -12.64762 -12.40145 -12.09814 -11.83126 -11.79378 -11.12064 -10.96841 -10.44520 -10.17150 -9.57046 -9.46054 -9.25332 -8.88521 -8.15050 -7.88978 -6.28314 -4.36534 0.52800 0.70561 2.72072 2.93919 3.00160 3.17998 3.23417 3.24459 3.33827 3.82136 3.95459 4.06741 4.25095 4.28380 4.59888 4.77047 5.05912 5.08118 5.17056 5.18084 5.30309 5.41099 5.53973 5.63394 6.28147 6.71534 7.09194 7.13758 7.33201 7.34006 7.49381 7.82109 8.34132 8.56118 8.80194 9.30427 10.81674 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.036639 B = 0.002630 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.021155 B =10643.370630 C =11386.926660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.548 4.548 8 H 0.064 0.936 9 C 0.250 3.750 10 N -0.703 5.703 11 C 0.493 3.507 12 O -0.552 6.552 13 C 0.094 3.906 14 N -0.712 5.712 15 C 0.275 3.725 16 C -0.225 4.225 17 C 0.152 3.848 18 F -0.120 7.120 19 C -0.040 4.040 20 F -0.127 7.127 21 C 0.151 3.849 22 F -0.120 7.120 23 C -0.218 4.218 24 H 0.268 0.732 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.394 0.606 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.420 0.580 31 H 0.153 0.847 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.491 -17.915 -0.016 19.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.587 4.587 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.351 5.351 11 C 0.276 3.724 12 O -0.431 6.431 13 C -0.034 4.034 14 N -0.341 5.341 15 C 0.166 3.834 16 C -0.249 4.249 17 C 0.131 3.869 18 F -0.098 7.098 19 C -0.063 4.063 20 F -0.106 7.106 21 C 0.130 3.870 22 F -0.098 7.098 23 C -0.241 4.241 24 H 0.078 0.922 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.227 0.773 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.260 0.740 31 H 0.170 0.830 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 7.580 -17.754 -0.013 19.304 hybrid contribution 0.790 0.638 -0.004 1.015 sum 8.370 -17.116 -0.017 19.052 Atomic orbital electron populations 1.69953 1.06153 1.27647 1.48406 1.24949 0.94933 0.99546 0.94486 0.86448 0.79421 0.82138 0.78769 1.19991 1.21006 1.19984 1.21153 0.93283 0.90312 1.53906 0.91799 1.19182 0.88185 0.81715 0.97992 1.46428 1.11595 1.05785 1.71264 1.20217 0.89260 0.84650 0.78226 1.90674 1.16583 1.84470 1.51415 1.21306 0.94971 0.83250 1.03826 1.44577 1.09842 1.01115 1.78608 1.17084 0.90101 0.85884 0.90300 1.20516 0.92798 0.97653 1.13957 1.16925 0.77274 0.92065 1.00624 1.91557 1.27648 1.97203 1.93410 1.17194 0.88778 0.81645 1.18730 1.91505 1.79553 1.44515 1.95050 1.16886 0.87216 0.82061 1.00837 1.91554 1.79642 1.45212 1.93440 1.20430 1.01532 0.88814 1.13366 0.92237 0.95277 0.95264 0.77273 0.88790 0.88798 0.74011 0.82978 0.82989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.98 13.29 55.43 0.74 -24.25 16 2 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.91 19.93 29.54 -169.99 -5.02 14.91 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.55 -13.95 9.28 -34.44 -0.32 -14.27 16 8 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 9 C 0.25 6.09 5.43 -5.20 -0.03 6.06 16 10 N -0.70 -12.75 5.55 -61.47 -0.34 -13.09 16 11 C 0.49 8.13 7.90 -10.98 -0.09 8.04 16 12 O -0.55 -11.32 15.67 5.56 0.09 -11.23 16 13 C 0.09 1.01 5.39 -5.19 -0.03 0.98 16 14 N -0.71 -7.55 5.71 -59.80 -0.34 -7.90 16 15 C 0.28 2.65 6.65 -83.76 -0.56 2.09 16 16 C -0.23 -2.06 9.29 -39.31 -0.37 -2.42 16 17 C 0.15 1.58 7.30 -39.40 -0.29 1.29 16 18 F -0.12 -1.32 17.18 2.25 0.04 -1.28 16 19 C -0.04 -0.45 7.31 -39.31 -0.29 -0.74 16 20 F -0.13 -1.59 17.09 2.25 0.04 -1.55 16 21 C 0.15 1.59 7.30 -39.40 -0.29 1.30 16 22 F -0.12 -1.34 17.18 2.25 0.04 -1.30 16 23 C -0.22 -2.03 9.87 -39.31 -0.39 -2.42 16 24 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.03 0.80 8.14 -51.92 -0.42 0.37 16 27 H 0.39 5.87 8.32 -40.82 -0.34 5.53 16 28 H 0.09 0.81 7.96 -51.93 -0.41 0.39 16 29 H 0.09 0.80 7.94 -51.93 -0.41 0.39 16 30 H 0.42 4.86 7.45 -40.82 -0.30 4.56 16 31 H 0.15 1.12 6.73 -52.49 -0.35 0.77 16 32 H 0.15 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 302.33 15.07 4.56 4.56 Total: -1.00 -29.90 302.33 -5.56 -35.46 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -2.62 Total: 4.14 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -2.73 Total: 1.53 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.05 Total: -45.23 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.12 Total: -4.13 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.90 -5.56 -35.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061095865.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.401 kcal (2) G-P(sol) polarization free energy of solvation -29.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds