Wall clock time and date at job start Tue Mar 31 2020 06:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99696 * 2 1 4 4 H 1.48501 * 109.47099 * 239.99732 * 3 2 1 5 5 H 1.48497 * 109.47322 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47056 * 119.99703 * 3 2 1 7 7 C 1.37868 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00291 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00274 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47543 * 179.97438 * 9 7 2 11 11 C 1.34783 * 119.99943 * 179.97438 * 10 9 7 12 12 O 1.21275 * 119.99914 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.99600 * 179.97438 * 11 10 9 14 14 N 1.46498 * 109.46769 * 179.97438 * 13 11 10 15 15 C 1.39803 * 119.99941 * 179.72228 * 14 13 11 16 16 C 1.38862 * 120.02690 * 0.02562 * 15 14 13 17 17 C 1.38351 * 119.96612 * 179.74057 * 16 15 14 18 18 F 1.35103 * 119.98257 * 180.25227 * 17 16 15 19 19 C 1.38609 * 120.03328 * 0.53008 * 17 16 15 20 20 F 1.35091 * 119.97354 * 179.70287 * 19 17 16 21 21 C 1.38616 * 120.05592 * 359.72224 * 19 17 16 22 22 F 1.35100 * 119.98517 * 180.02562 * 21 19 17 23 23 C 1.38343 * 120.03131 * 0.02562 * 21 19 17 24 24 H 0.97004 * 120.00287 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47280 * 59.98954 * 9 7 2 26 26 H 1.09008 * 109.46977 * 299.99483 * 9 7 2 27 27 H 0.96995 * 119.99612 * 359.97438 * 10 9 7 28 28 H 1.09004 * 109.47210 * 60.00194 * 13 11 10 29 29 H 1.08994 * 109.47121 * 300.00164 * 13 11 10 30 30 H 0.97001 * 120.00384 * 0.02562 * 14 13 11 31 31 H 1.08000 * 120.01924 * 359.97438 * 16 15 14 32 32 H 1.08003 * 120.02001 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5615 -5.1049 0.0020 13 6 2.7332 -6.0287 0.0005 14 7 2.0008 -7.2974 0.0018 15 6 2.6998 -8.5081 -0.0043 16 6 4.0884 -8.5088 -0.0111 17 6 4.7789 -9.7076 -0.0117 18 9 6.1299 -9.7086 -0.0132 19 6 4.0853 -10.9077 -0.0166 20 9 4.7608 -12.0776 -0.0233 21 6 2.6992 -10.9084 -0.0151 22 9 2.0246 -12.0790 -0.0194 23 6 2.0062 -9.7111 -0.0092 24 1 -0.4851 0.8401 0.0004 25 1 0.6247 -2.5570 -0.8895 26 1 0.6242 -2.5567 0.8904 27 1 3.1568 -3.4353 0.0002 28 1 3.3606 -5.9708 0.8900 29 1 3.3592 -5.9710 -0.8899 30 1 1.0308 -7.2975 0.0025 31 1 4.6291 -7.5739 -0.0121 32 1 0.9261 -9.7119 -0.0085 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061095865.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:50 Heat of formation + Delta-G solvation = -168.563929 kcal Electronic energy + Delta-G solvation = -21254.362962 eV Core-core repulsion = 17185.404732 eV Total energy + Delta-G solvation = -4068.958230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.69228 -50.20584 -49.38585 -40.96155 -39.98331 -36.43546 -35.89479 -34.38392 -31.72264 -31.01263 -29.46449 -27.44818 -24.77710 -24.27886 -23.14969 -21.52591 -19.89913 -19.21640 -18.70292 -18.55688 -17.72946 -17.72222 -17.28827 -16.82871 -16.72336 -16.48451 -16.33134 -16.17106 -15.93751 -15.88534 -15.30165 -15.23308 -14.94494 -14.38783 -13.95946 -13.85353 -13.64411 -13.46614 -12.97271 -12.94250 -12.66678 -12.61762 -12.24009 -11.50738 -10.99946 -10.93354 -10.78952 -10.01592 -9.87468 -8.69096 -8.28706 -6.44766 -0.22654 -0.10278 1.45453 1.48250 1.56348 1.64977 1.81207 2.20827 2.34231 2.49111 2.71846 3.07123 3.16165 3.24324 3.52314 3.77117 3.88858 4.06579 4.33291 4.39708 4.54096 4.61435 4.79886 4.92336 5.10959 5.25207 5.45729 5.47220 5.65504 5.84770 5.94994 6.44673 6.66324 6.83711 7.23801 7.41790 8.82920 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.036639 B = 0.002630 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.021155 B =10643.370630 C =11386.926660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.289 1.289 6 H -0.262 1.262 7 C -0.556 4.556 8 H 0.087 0.913 9 C 0.266 3.734 10 N -0.700 5.700 11 C 0.491 3.509 12 O -0.597 6.597 13 C 0.109 3.891 14 N -0.718 5.718 15 C 0.277 3.723 16 C -0.211 4.211 17 C 0.148 3.852 18 F -0.124 7.124 19 C -0.056 4.056 20 F -0.140 7.140 21 C 0.144 3.856 22 F -0.127 7.127 23 C -0.209 4.209 24 H 0.268 0.732 25 H -0.010 1.010 26 H -0.010 1.010 27 H 0.413 0.587 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.415 0.585 31 H 0.178 0.822 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.790 -17.523 -0.015 20.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.804 3.196 4 H -0.187 1.187 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.594 4.594 8 H 0.105 0.895 9 C 0.143 3.857 10 N -0.350 5.350 11 C 0.278 3.722 12 O -0.479 6.479 13 C -0.018 4.018 14 N -0.347 5.347 15 C 0.168 3.832 16 C -0.234 4.234 17 C 0.126 3.874 18 F -0.103 7.103 19 C -0.079 4.079 20 F -0.119 7.119 21 C 0.122 3.878 22 F -0.105 7.105 23 C -0.233 4.233 24 H 0.077 0.923 25 H 0.008 0.992 26 H 0.008 0.992 27 H 0.250 0.750 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.254 0.746 31 H 0.195 0.805 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 9.944 -17.402 -0.012 20.043 hybrid contribution 0.029 0.440 -0.005 0.440 sum 9.972 -16.963 -0.017 19.677 Atomic orbital electron populations 1.70117 1.08232 1.28592 1.50032 1.26013 0.95702 1.03814 0.93973 0.85264 0.77936 0.76875 0.79515 1.18666 1.21477 1.18655 1.21612 0.94462 0.90555 1.52761 0.89518 1.18556 0.88657 0.84137 0.94363 1.46083 1.11600 1.05240 1.72034 1.21213 0.89703 0.85253 0.76038 1.90661 1.19205 1.85154 1.52832 1.21339 0.93168 0.80364 1.06951 1.44568 1.09666 1.01317 1.79130 1.17049 0.90261 0.85410 0.90464 1.20701 0.92477 0.98081 1.12183 1.16973 0.77123 0.92154 1.01105 1.91547 1.27973 1.97220 1.93522 1.17454 0.89175 0.81649 1.19589 1.91468 1.79846 1.45318 1.95229 1.16945 0.87035 0.82212 1.01562 1.91535 1.79730 1.45685 1.93599 1.20563 1.02260 0.88363 1.12118 0.92313 0.99190 0.99181 0.75006 0.85462 0.85469 0.74614 0.80485 0.81701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.89 13.29 21.44 0.28 -53.60 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.98 40.20 29.54 68.60 2.03 42.23 16 4 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 5 H -0.29 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 7 C -0.56 -28.05 9.28 25.60 0.24 -27.81 16 8 H 0.09 3.87 7.60 -2.91 -0.02 3.85 16 9 C 0.27 13.28 5.43 85.63 0.46 13.74 16 10 N -0.70 -24.62 5.55 -466.79 -2.59 -27.21 16 11 C 0.49 15.52 7.90 87.66 0.69 16.22 16 12 O -0.60 -24.68 15.67 -3.01 -0.05 -24.73 16 13 C 0.11 1.90 5.39 85.63 0.46 2.37 16 14 N -0.72 -13.21 5.71 -343.11 -1.96 -15.17 16 15 C 0.28 4.51 6.65 38.17 0.25 4.77 16 16 C -0.21 -3.11 9.29 22.45 0.21 -2.91 16 17 C 0.15 2.75 7.30 22.39 0.16 2.91 16 18 F -0.12 -2.49 17.18 44.97 0.77 -1.72 16 19 C -0.06 -1.19 7.31 22.45 0.16 -1.02 16 20 F -0.14 -3.45 17.09 44.97 0.77 -2.68 16 21 C 0.14 2.85 7.30 22.39 0.16 3.01 16 22 F -0.13 -2.76 17.18 44.97 0.77 -1.98 16 23 C -0.21 -3.51 9.87 22.44 0.22 -3.29 16 24 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 25 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 26 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 27 H 0.41 11.21 8.32 -92.71 -0.77 10.44 16 28 H 0.13 1.51 7.96 -2.38 -0.02 1.49 16 29 H 0.13 1.51 7.94 -2.39 -0.02 1.49 16 30 H 0.42 8.93 7.45 -92.71 -0.69 8.24 16 31 H 0.18 1.69 6.73 -2.91 -0.02 1.67 16 32 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -67.44 302.33 3.27 -64.17 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -0.25 Total: 11.99 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 3.49 Total: 8.70 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -4.26 Total: -95.98 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.05 Total: -24.73 kcal Atomic # 9 Polarization: -8.69 SS G_CDS: 2.31 Total: -6.38 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -67.44 3.27 -64.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061095865.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.389 kcal (2) G-P(sol) polarization free energy of solvation -67.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds