Wall clock time and date at job start Tue Mar 31 2020 05:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47255 * 2 1 4 4 C 1.50705 * 109.46875 * 119.99737 * 2 1 3 5 5 H 1.07998 * 119.99966 * 119.99543 * 4 2 1 6 6 C 1.37875 * 120.00132 * 299.99933 * 4 2 1 7 7 N 1.31509 * 119.99953 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00083 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47022 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47332 * 119.99877 * 8 6 4 11 11 H 1.48504 * 109.47164 * 239.99976 * 8 6 4 12 12 N 1.46499 * 109.47083 * 239.99470 * 2 1 3 13 13 C 1.46499 * 120.00225 * 300.00126 * 12 2 1 14 14 S 1.65600 * 119.99691 * 120.00273 * 12 2 1 15 15 O 1.42102 * 106.40015 * 23.54405 * 14 12 2 16 16 O 1.42097 * 106.40174 * 156.45969 * 14 12 2 17 17 C 1.76194 * 107.22024 * 270.00162 * 14 12 2 18 18 C 1.38240 * 120.40192 * 269.72621 * 17 14 12 19 19 N 1.31854 * 120.81613 * 179.71962 * 18 17 14 20 20 C 1.31873 * 121.74975 * 0.54355 * 19 18 17 21 21 C 1.38422 * 120.72851 * 359.74318 * 20 19 18 22 22 F 1.35096 * 120.44341 * 179.97438 * 21 20 19 23 23 C 1.38587 * 120.40972 * 89.99987 * 17 14 12 24 24 H 1.08996 * 109.47255 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47233 * 300.00485 * 1 2 3 26 26 H 1.09001 * 109.46541 * 60.00107 * 1 2 3 27 27 H 0.97006 * 119.99999 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47391 * 270.00005 * 13 12 2 29 29 H 1.09001 * 109.46813 * 150.00061 * 13 12 2 30 30 H 1.09004 * 109.47041 * 30.00189 * 13 12 2 31 31 H 1.07997 * 119.59134 * 359.97438 * 18 17 14 32 32 H 1.08000 * 119.63391 * 179.72058 * 20 19 18 33 33 H 1.08002 * 120.79716 * 359.97438 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.1473 -2.2862 3.6039 10 1 3.1472 -0.1856 4.8161 11 1 1.1677 -1.5864 4.8166 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 16 2.9704 0.1140 -2.2862 15 8 3.5795 1.1827 -1.5747 16 8 3.7119 -0.8791 -2.9813 17 6 1.8962 0.8534 -3.4710 18 6 1.5374 0.1655 -4.6152 19 7 0.7297 0.7088 -5.5046 20 6 0.2422 1.9241 -5.3483 21 6 0.5615 2.6760 -4.2307 22 9 0.0593 3.9206 -4.0767 23 6 1.4053 2.1337 -3.2701 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 0.7087 1.1614 3.4844 28 1 2.4157 -2.7378 -0.9715 29 1 1.6238 -2.2853 -2.5001 30 1 0.6904 -2.3003 -0.9845 31 1 1.9200 -0.8307 -4.7806 32 1 -0.4131 2.3375 -6.1007 33 1 1.6720 2.6960 -2.3875 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095064.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:01 Heat of formation + Delta-G solvation = -74.138769 kcal Electronic energy + Delta-G solvation = -21345.249419 eV Core-core repulsion = 17834.226158 eV Total energy + Delta-G solvation = -3511.023261 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.073 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.15505 -40.16750 -36.91539 -36.32349 -35.45261 -32.85881 -32.67841 -31.21268 -29.21324 -25.73865 -25.24377 -24.52630 -23.83201 -20.86943 -19.03715 -17.93457 -17.58499 -17.24575 -16.91316 -16.43110 -15.99654 -15.92431 -15.29686 -14.59423 -14.11753 -13.79693 -13.61413 -13.44083 -13.30075 -12.92212 -12.72330 -12.14138 -11.89739 -11.70154 -11.48834 -11.47724 -11.33196 -11.06489 -10.88406 -10.63322 -10.39896 -10.34529 -10.08559 -9.83286 -9.36366 -9.34411 -8.53406 -8.11684 -6.14691 -4.21676 0.25572 0.74094 0.79335 3.11310 3.24426 3.33011 3.36718 3.51459 3.72062 4.04052 4.13678 4.34684 4.40150 4.59043 4.69200 4.85875 5.17130 5.33901 5.44310 5.48287 5.62326 6.03707 6.23949 6.26821 6.51131 6.64467 6.68807 6.88838 7.28423 7.39216 7.51929 7.68564 7.94178 8.16941 8.80937 9.44751 10.91161 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.022490 B = 0.005759 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.716232 B = 4860.969809 C = 5431.175748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.265 3.735 3 H 0.062 0.938 4 C -0.519 4.519 5 H 0.066 0.934 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.900 3.100 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.284 1.284 12 N -0.975 5.975 13 C 0.105 3.895 14 S 2.686 3.314 15 O -0.943 6.943 16 O -0.963 6.963 17 C -0.702 4.702 18 C 0.183 3.817 19 N -0.472 5.472 20 C 0.118 3.882 21 C 0.028 3.972 22 F -0.125 7.125 23 C -0.003 4.003 24 H 0.036 0.964 25 H 0.096 0.904 26 H 0.008 0.992 27 H 0.264 0.736 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.179 0.821 32 H 0.173 0.827 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.455 0.308 -12.344 12.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.162 3.838 3 H 0.079 0.921 4 C -0.559 4.559 5 H 0.084 0.916 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.728 3.272 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.210 1.210 12 N -0.816 5.816 13 C -0.041 4.041 14 S 2.771 3.229 15 O -0.933 6.933 16 O -0.954 6.954 17 C -0.785 4.785 18 C 0.025 3.975 19 N -0.180 5.180 20 C -0.040 4.040 21 C 0.006 3.994 22 F -0.104 7.104 23 C -0.030 4.030 24 H 0.055 0.945 25 H 0.114 0.886 26 H 0.027 0.973 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.196 0.804 32 H 0.190 0.810 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.917 0.072 -12.989 13.130 hybrid contribution -0.412 0.565 1.328 1.500 sum -2.329 0.637 -11.661 11.909 Atomic orbital electron populations 1.22159 0.98187 1.00010 1.00683 1.18866 0.91373 0.93212 0.80328 0.92087 1.21327 1.31772 1.13122 0.89705 0.91626 1.24913 0.94882 0.94995 0.99081 1.69857 1.36436 1.22704 1.23859 0.86408 0.78623 0.79671 0.82530 1.19638 1.20847 1.20973 1.57455 1.70393 1.19632 1.34164 1.21262 1.02217 0.81453 0.99162 1.02458 0.74079 0.73670 0.72716 1.93597 1.72921 1.56016 1.70792 1.93537 1.67935 1.58822 1.75060 1.32673 1.21924 1.06067 1.17836 1.22661 0.88918 0.99146 0.86777 1.67868 1.09726 1.10547 1.29845 1.23204 0.96135 0.89941 0.94766 1.18765 0.99805 0.82637 0.98187 1.91552 1.85490 1.37660 1.95658 1.21488 0.90142 0.93307 0.98058 0.94461 0.88596 0.97290 0.92635 0.92542 0.92976 0.90619 0.80374 0.80962 0.81550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.95 37.16 0.33 -2.93 16 2 C 0.26 6.09 2.62 -69.08 -0.18 5.91 16 3 H 0.06 1.53 6.91 -51.93 -0.36 1.17 16 4 C -0.52 -13.33 8.37 -34.44 -0.29 -13.61 16 5 H 0.07 1.67 7.65 -52.49 -0.40 1.27 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -23.91 11.32 55.43 0.63 -23.28 16 8 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 9 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 12 N -0.98 -18.76 3.06 -115.85 -0.35 -19.12 16 13 C 0.11 1.70 9.53 59.85 0.57 2.27 16 14 S 2.69 48.56 5.65 -107.50 -0.61 47.95 16 15 O -0.94 -20.08 15.92 -57.17 -0.91 -20.99 16 16 O -0.96 -17.81 16.37 -57.17 -0.94 -18.74 16 17 C -0.70 -10.66 5.99 -39.45 -0.24 -10.89 16 18 C 0.18 2.50 10.69 -17.54 -0.19 2.31 16 19 N -0.47 -6.21 10.36 -13.19 -0.14 -6.34 16 20 C 0.12 1.38 11.17 -17.47 -0.20 1.18 16 21 C 0.03 0.37 7.35 -39.28 -0.29 0.08 16 22 F -0.12 -1.61 17.28 2.25 0.04 -1.57 16 23 C 0.00 -0.04 9.64 -39.22 -0.38 -0.42 16 24 H 0.04 0.76 6.66 -51.93 -0.35 0.41 16 25 H 0.10 2.31 6.07 -51.93 -0.32 2.00 16 26 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 27 H 0.26 6.75 8.31 -40.82 -0.34 6.42 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.67 7.79 -51.93 -0.40 0.27 16 30 H 0.08 1.19 6.43 -51.93 -0.33 0.86 16 31 H 0.18 2.05 7.62 -52.49 -0.40 1.65 16 32 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.17 2.43 7.71 -52.49 -0.40 2.03 16 LS Contribution 299.92 15.07 4.52 4.52 Total: -1.00 -30.05 299.92 -7.09 -37.15 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -3.37 Total: -0.47 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -0.95 Total: -14.53 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 0.14 Total: -48.74 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -1.85 Total: -39.74 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 48.56 SS G_CDS: -0.61 Total: 47.95 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.05 -7.09 -37.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095064.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.991 kcal (2) G-P(sol) polarization free energy of solvation -30.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds