Wall clock time and date at job start Tue Mar 31 2020 05:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47255 * 2 1 4 4 C 1.50705 * 109.46875 * 119.99737 * 2 1 3 5 5 H 1.07998 * 119.99966 * 119.99543 * 4 2 1 6 6 C 1.37875 * 120.00132 * 299.99933 * 4 2 1 7 7 N 1.31509 * 119.99953 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00083 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47022 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47332 * 119.99877 * 8 6 4 11 11 H 1.48504 * 109.47164 * 239.99976 * 8 6 4 12 12 N 1.46499 * 109.47083 * 239.99470 * 2 1 3 13 13 C 1.46499 * 120.00225 * 300.00126 * 12 2 1 14 14 S 1.65600 * 119.99691 * 120.00273 * 12 2 1 15 15 O 1.42102 * 106.40015 * 23.54405 * 14 12 2 16 16 O 1.42097 * 106.40174 * 156.45969 * 14 12 2 17 17 C 1.76194 * 107.22024 * 270.00162 * 14 12 2 18 18 C 1.38240 * 120.40192 * 269.72621 * 17 14 12 19 19 N 1.31854 * 120.81613 * 179.71962 * 18 17 14 20 20 C 1.31873 * 121.74975 * 0.54355 * 19 18 17 21 21 C 1.38422 * 120.72851 * 359.74318 * 20 19 18 22 22 F 1.35096 * 120.44341 * 179.97438 * 21 20 19 23 23 C 1.38587 * 120.40972 * 89.99987 * 17 14 12 24 24 H 1.08996 * 109.47255 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47233 * 300.00485 * 1 2 3 26 26 H 1.09001 * 109.46541 * 60.00107 * 1 2 3 27 27 H 0.97006 * 119.99999 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47391 * 270.00005 * 13 12 2 29 29 H 1.09001 * 109.46813 * 150.00061 * 13 12 2 30 30 H 1.09004 * 109.47041 * 30.00189 * 13 12 2 31 31 H 1.07997 * 119.59134 * 359.97438 * 18 17 14 32 32 H 1.08000 * 119.63391 * 179.72058 * 20 19 18 33 33 H 1.08002 * 120.79716 * 359.97438 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.1473 -2.2862 3.6039 10 1 3.1472 -0.1856 4.8161 11 1 1.1677 -1.5864 4.8166 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 16 2.9704 0.1140 -2.2862 15 8 3.5795 1.1827 -1.5747 16 8 3.7119 -0.8791 -2.9813 17 6 1.8962 0.8534 -3.4710 18 6 1.5374 0.1655 -4.6152 19 7 0.7297 0.7088 -5.5046 20 6 0.2422 1.9241 -5.3483 21 6 0.5615 2.6760 -4.2307 22 9 0.0593 3.9206 -4.0767 23 6 1.4053 2.1337 -3.2701 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 0.7087 1.1614 3.4844 28 1 2.4157 -2.7378 -0.9715 29 1 1.6238 -2.2853 -2.5001 30 1 0.6904 -2.3003 -0.9845 31 1 1.9200 -0.8307 -4.7806 32 1 -0.4131 2.3375 -6.1007 33 1 1.6720 2.6960 -2.3875 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095064.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:00 Heat of formation + Delta-G solvation = -94.981120 kcal Electronic energy + Delta-G solvation = -21346.153211 eV Core-core repulsion = 17834.226158 eV Total energy + Delta-G solvation = -3511.927053 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.073 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.17758 -41.22281 -38.43662 -37.94621 -36.97780 -34.54489 -33.95182 -32.26486 -30.94084 -27.30606 -27.02889 -25.62473 -24.90646 -22.58947 -20.34754 -19.30659 -18.71447 -18.59948 -18.28202 -18.01468 -17.18867 -17.04553 -16.94083 -16.28472 -15.28992 -15.13139 -14.84320 -14.82739 -14.56466 -14.50227 -13.81256 -13.70844 -13.41737 -13.23436 -13.19093 -12.99377 -12.81600 -12.80217 -12.59180 -12.23135 -12.16450 -11.92101 -11.54891 -11.14975 -10.93654 -10.50875 -10.38923 -9.70168 -8.11791 -6.24870 -0.87699 -0.59871 -0.31668 1.43447 1.46940 1.56891 1.90796 2.25164 2.44915 2.63889 2.70820 3.09605 3.17567 3.27537 3.55126 3.57892 3.70090 4.06926 4.18832 4.49117 4.54887 4.69732 4.85677 4.94532 5.01705 5.10189 5.20937 5.24168 5.61229 5.69321 5.85175 6.09483 6.28492 6.36300 6.82912 7.44392 8.92750 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.022490 B = 0.005759 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.716232 B = 4860.969809 C = 5431.175748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.269 3.731 3 H 0.032 0.968 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.955 3.045 9 H -0.268 1.268 10 H -0.285 1.285 11 H -0.277 1.277 12 N -0.984 5.984 13 C 0.095 3.905 14 S 2.700 3.300 15 O -0.985 6.985 16 O -0.970 6.970 17 C -0.706 4.706 18 C 0.189 3.811 19 N -0.475 5.475 20 C 0.138 3.862 21 C 0.026 3.974 22 F -0.124 7.124 23 C -0.019 4.019 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.029 0.971 27 H 0.264 0.736 28 H 0.051 0.949 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.200 0.800 32 H 0.215 0.785 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.349 -0.451 -14.117 14.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.165 3.835 3 H 0.050 0.950 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.781 3.219 9 H -0.192 1.192 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.824 5.824 13 C -0.050 4.050 14 S 2.790 3.210 15 O -0.976 6.976 16 O -0.960 6.960 17 C -0.794 4.794 18 C 0.031 3.969 19 N -0.183 5.183 20 C -0.020 4.020 21 C 0.004 3.996 22 F -0.102 7.102 23 C -0.047 4.047 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.216 0.784 32 H 0.232 0.768 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.783 -0.730 -14.737 15.015 hybrid contribution -0.160 0.856 1.736 1.942 sum -2.943 0.125 -13.001 13.330 Atomic orbital electron populations 1.21957 0.97055 1.00484 1.00330 1.18515 0.92110 0.91793 0.81067 0.95034 1.21656 1.31580 1.13080 0.91102 0.92074 1.25622 0.95211 0.95697 1.01663 1.69972 1.37340 1.23753 1.24332 0.85544 0.78211 0.78639 0.79464 1.19217 1.21140 1.20227 1.57306 1.70395 1.20945 1.33786 1.21511 1.02172 0.79667 1.01624 1.01627 0.73910 0.72885 0.72587 1.93543 1.74463 1.57278 1.72278 1.93518 1.68506 1.59050 1.74909 1.32046 1.22931 1.06527 1.17923 1.23016 0.88278 0.99764 0.85864 1.68018 1.09796 1.11127 1.29401 1.23870 0.94820 0.88916 0.94436 1.18794 0.99620 0.82871 0.98303 1.91560 1.85385 1.37596 1.95685 1.21542 0.91028 0.93474 0.98618 0.93466 0.91285 0.95215 0.92645 0.93040 0.89364 0.90240 0.78354 0.76808 0.82544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.99 8.95 71.98 0.64 -5.34 16 2 C 0.27 12.58 2.62 44.25 0.12 12.70 16 3 H 0.03 1.66 6.91 -2.39 -0.02 1.65 16 4 C -0.53 -27.79 8.37 25.60 0.21 -27.58 16 5 H 0.06 3.15 7.65 -2.91 -0.02 3.12 16 6 C 0.02 0.95 5.30 84.65 0.45 1.40 16 7 N -0.91 -50.07 11.32 21.45 0.24 -49.83 16 8 Si 0.96 42.18 29.54 68.60 2.03 44.20 16 9 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 10 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 12 N -0.98 -37.62 3.06 -520.44 -1.59 -39.22 16 13 C 0.10 2.95 9.53 127.77 1.22 4.17 16 14 S 2.70 97.40 5.65 -56.49 -0.32 97.08 16 15 O -0.99 -43.40 15.92 -128.00 -2.04 -45.44 16 16 O -0.97 -34.89 16.37 -128.00 -2.10 -36.99 16 17 C -0.71 -20.61 5.99 22.35 0.13 -20.47 16 18 C 0.19 4.63 10.69 84.69 0.90 5.53 16 19 N -0.48 -10.81 10.36 -195.65 -2.03 -12.83 16 20 C 0.14 2.71 11.17 84.73 0.95 3.65 16 21 C 0.03 0.64 7.35 22.47 0.17 0.80 16 22 F -0.12 -2.95 17.28 44.97 0.78 -2.18 16 23 C -0.02 -0.56 9.64 22.51 0.22 -0.34 16 24 H 0.05 1.89 6.66 -2.39 -0.02 1.87 16 25 H 0.07 3.38 6.07 -2.39 -0.01 3.36 16 26 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.26 13.77 8.31 -92.70 -0.77 13.00 16 28 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.09 2.06 7.79 -2.39 -0.02 2.04 16 30 H 0.08 2.39 6.43 -2.38 -0.02 2.37 16 31 H 0.20 3.93 7.62 -2.91 -0.02 3.91 16 32 H 0.22 2.35 8.06 -2.91 -0.02 2.33 16 33 H 0.16 4.75 7.71 -2.91 -0.02 4.72 16 Total: -1.00 -64.61 299.92 1.12 -63.49 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 1.14 Total: 7.20 kcal Atomic # 6 Polarization: -30.49 SS G_CDS: 5.01 Total: -25.49 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -3.38 Total: -101.89 kcal Atomic # 8 Polarization: -78.29 SS G_CDS: -4.13 Total: -82.43 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 16 Polarization: 97.40 SS G_CDS: -0.32 Total: 97.08 kcal Total: -64.61 1.12 -63.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095064.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.492 kcal (2) G-P(sol) polarization free energy of solvation -64.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds