Wall clock time and date at job start Tue Mar 31 2020 05:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.46509 * 119.99920 * 60.00125 * 12 2 1 14 14 S 1.65602 * 120.00679 * 239.99966 * 12 2 1 15 15 O 1.42100 * 106.40635 * 203.54125 * 14 12 2 16 16 O 1.42101 * 106.39740 * 336.46506 * 14 12 2 17 17 C 1.76208 * 107.21547 * 89.99733 * 14 12 2 18 18 C 1.38234 * 120.40711 * 269.73126 * 17 14 12 19 19 N 1.31848 * 120.81595 * 179.68173 * 18 17 14 20 20 C 1.31868 * 121.75043 * 0.62926 * 19 18 17 21 21 C 1.38419 * 120.72650 * 359.65734 * 20 19 18 22 22 F 1.35106 * 120.44114 * 180.02562 * 21 20 19 23 23 C 1.38589 * 120.39978 * 90.00298 * 17 14 12 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 28 28 H 1.09003 * 109.46975 * 89.99812 * 13 12 2 29 29 H 1.08995 * 109.47277 * 209.99863 * 13 12 2 30 30 H 1.09003 * 109.46743 * 330.00349 * 13 12 2 31 31 H 1.07997 * 119.58772 * 359.97438 * 18 17 14 32 32 H 1.08001 * 119.63452 * 179.67901 * 20 19 18 33 33 H 1.08004 * 120.80367 * 359.97438 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9704 0.1142 2.2863 15 8 3.7118 -0.8788 2.9816 16 8 3.5794 1.1830 1.5749 17 6 1.8960 0.8537 3.4711 18 6 1.4107 2.1328 3.2733 19 7 0.6014 2.6915 4.1515 20 6 0.2329 2.0654 5.2520 21 6 0.6828 0.7844 5.5213 22 9 0.3011 0.1481 6.6504 23 6 1.5316 0.1619 4.6154 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 0.7089 1.1612 -3.4844 28 1 2.4157 -2.7377 0.9718 29 1 1.6238 -2.2851 2.5002 30 1 0.6904 -2.3002 0.9847 31 1 1.6944 2.6795 2.3862 32 1 -0.4276 2.5575 5.9507 33 1 1.8986 -0.8373 4.7981 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095067.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:02 Heat of formation + Delta-G solvation = -73.720919 kcal Electronic energy + Delta-G solvation = -21303.255120 eV Core-core repulsion = 17792.249979 eV Total energy + Delta-G solvation = -3511.005142 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.22343 -40.16576 -36.91773 -36.32106 -35.45401 -32.88558 -32.66711 -31.19711 -29.20526 -25.74533 -25.23889 -24.50186 -23.86584 -20.86255 -19.05397 -17.94216 -17.59630 -17.24528 -16.89808 -16.48484 -16.04881 -15.88415 -15.30859 -14.59757 -14.17465 -13.78382 -13.60850 -13.49265 -13.30548 -12.91852 -12.71670 -12.13646 -11.90373 -11.69497 -11.47331 -11.45923 -11.33363 -11.04165 -10.86590 -10.64352 -10.43035 -10.36001 -10.07573 -9.81379 -9.37639 -9.34527 -8.51478 -8.11765 -6.13115 -4.20400 0.25930 0.73078 0.77734 3.12403 3.27852 3.32678 3.35476 3.51055 3.68896 4.07448 4.14708 4.34012 4.36092 4.59486 4.66556 4.82221 5.18331 5.33536 5.42687 5.46607 5.61840 6.02410 6.23205 6.26125 6.50390 6.65916 6.69984 6.90120 7.28924 7.43551 7.52864 7.69735 7.95397 8.18175 8.81377 9.45832 10.92591 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.026790 B = 0.005288 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.927227 B = 5293.907621 C = 5552.748344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.265 3.735 3 H 0.063 0.937 4 C -0.522 4.522 5 H 0.064 0.936 6 C 0.065 3.935 7 N -0.890 5.890 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.975 5.975 13 C 0.106 3.894 14 S 2.686 3.314 15 O -0.966 6.966 16 O -0.941 6.941 17 C -0.703 4.703 18 C 0.194 3.806 19 N -0.468 5.468 20 C 0.120 3.880 21 C 0.023 3.977 22 F -0.128 7.128 23 C -0.010 4.010 24 H 0.035 0.965 25 H 0.096 0.904 26 H 0.009 0.991 27 H 0.265 0.735 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.184 0.816 32 H 0.173 0.827 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.391 -0.736 13.037 13.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.163 3.837 3 H 0.081 0.919 4 C -0.561 4.561 5 H 0.082 0.918 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.816 5.816 13 C -0.040 4.040 14 S 2.771 3.229 15 O -0.956 6.956 16 O -0.931 6.931 17 C -0.786 4.786 18 C 0.036 3.964 19 N -0.176 5.176 20 C -0.038 4.038 21 C 0.000 4.000 22 F -0.106 7.106 23 C -0.038 4.038 24 H 0.054 0.946 25 H 0.115 0.885 26 H 0.028 0.972 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.201 0.799 32 H 0.190 0.810 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.939 0.289 12.817 12.966 hybrid contribution -0.286 -1.261 -0.086 1.296 sum -2.224 -0.972 12.731 12.960 Atomic orbital electron populations 1.22161 0.98173 0.99948 1.00761 1.18869 0.91382 0.93255 0.80226 0.91934 1.21243 1.31965 1.13176 0.89747 0.91784 1.24901 0.94860 0.94980 0.99016 1.69833 1.36253 1.22615 1.24082 0.86527 0.79386 0.79553 0.81772 1.20223 1.21193 1.20068 1.57463 1.70391 1.19586 1.34194 1.21251 1.02237 0.81539 0.99017 1.02462 0.74073 0.73700 0.72686 1.93531 1.68043 1.58938 1.75064 1.93603 1.72830 1.55948 1.70698 1.32689 1.22133 1.07861 1.15906 1.22799 0.87109 0.89855 0.96647 1.67919 1.11806 1.35826 1.02079 1.23251 0.95956 0.89934 0.94695 1.18758 1.01273 0.94011 0.85918 1.91540 1.89687 1.81540 1.47871 1.21371 0.91511 1.00326 0.90548 0.94556 0.88548 0.97221 0.92501 0.92556 0.93171 0.90590 0.79907 0.80969 0.82020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 8.95 37.16 0.33 -2.92 16 2 C 0.27 6.08 2.62 -69.09 -0.18 5.90 16 3 H 0.06 1.56 6.91 -51.93 -0.36 1.20 16 4 C -0.52 -13.35 8.37 -34.44 -0.29 -13.64 16 5 H 0.06 1.62 7.65 -52.49 -0.40 1.22 16 6 C 0.07 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -23.82 11.32 55.43 0.63 -23.19 16 8 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 N -0.98 -18.76 3.06 -115.85 -0.35 -19.12 16 13 C 0.11 1.72 9.53 59.85 0.57 2.29 16 14 S 2.69 48.57 5.65 -107.50 -0.61 47.97 16 15 O -0.97 -18.09 16.43 -57.17 -0.94 -19.03 16 16 O -0.94 -19.80 15.87 -57.17 -0.91 -20.71 16 17 C -0.70 -10.67 5.99 -39.45 -0.24 -10.91 16 18 C 0.19 2.92 10.68 -17.55 -0.19 2.74 16 19 N -0.47 -6.62 10.36 -13.20 -0.14 -6.75 16 20 C 0.12 1.41 11.17 -17.47 -0.20 1.22 16 21 C 0.02 0.28 7.34 -39.28 -0.29 -0.01 16 22 F -0.13 -1.47 17.28 2.25 0.04 -1.43 16 23 C -0.01 -0.14 9.64 -39.22 -0.38 -0.51 16 24 H 0.04 0.74 6.66 -51.93 -0.35 0.39 16 25 H 0.10 2.32 6.07 -51.93 -0.32 2.00 16 26 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.66 7.79 -51.93 -0.40 0.26 16 30 H 0.08 1.20 6.43 -51.93 -0.33 0.87 16 31 H 0.18 2.67 7.62 -52.49 -0.40 2.27 16 32 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.16 1.86 7.71 -52.48 -0.40 1.46 16 LS Contribution 299.93 15.07 4.52 4.52 Total: -1.00 -29.85 299.93 -7.09 -36.95 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -3.37 Total: -0.34 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -0.95 Total: -14.25 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.14 Total: -49.06 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -1.85 Total: -39.74 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 48.57 SS G_CDS: -0.61 Total: 47.97 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.85 -7.09 -36.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095067.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.776 kcal (2) G-P(sol) polarization free energy of solvation -29.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds