Wall clock time and date at job start Tue Mar 31 2020 05:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.46509 * 119.99920 * 60.00125 * 12 2 1 14 14 S 1.65602 * 120.00679 * 239.99966 * 12 2 1 15 15 O 1.42100 * 106.40635 * 203.54125 * 14 12 2 16 16 O 1.42101 * 106.39740 * 336.46506 * 14 12 2 17 17 C 1.76208 * 107.21547 * 89.99733 * 14 12 2 18 18 C 1.38234 * 120.40711 * 269.73126 * 17 14 12 19 19 N 1.31848 * 120.81595 * 179.68173 * 18 17 14 20 20 C 1.31868 * 121.75043 * 0.62926 * 19 18 17 21 21 C 1.38419 * 120.72650 * 359.65734 * 20 19 18 22 22 F 1.35106 * 120.44114 * 180.02562 * 21 20 19 23 23 C 1.38589 * 120.39978 * 90.00298 * 17 14 12 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 28 28 H 1.09003 * 109.46975 * 89.99812 * 13 12 2 29 29 H 1.08995 * 109.47277 * 209.99863 * 13 12 2 30 30 H 1.09003 * 109.46743 * 330.00349 * 13 12 2 31 31 H 1.07997 * 119.58772 * 359.97438 * 18 17 14 32 32 H 1.08001 * 119.63452 * 179.67901 * 20 19 18 33 33 H 1.08004 * 120.80367 * 359.97438 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9704 0.1142 2.2863 15 8 3.7118 -0.8788 2.9816 16 8 3.5794 1.1830 1.5749 17 6 1.8960 0.8537 3.4711 18 6 1.4107 2.1328 3.2733 19 7 0.6014 2.6915 4.1515 20 6 0.2329 2.0654 5.2520 21 6 0.6828 0.7844 5.5213 22 9 0.3011 0.1481 6.6504 23 6 1.5316 0.1619 4.6154 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 0.7089 1.1612 -3.4844 28 1 2.4157 -2.7377 0.9718 29 1 1.6238 -2.2851 2.5002 30 1 0.6904 -2.3002 0.9847 31 1 1.6944 2.6795 2.3862 32 1 -0.4276 2.5575 5.9507 33 1 1.8986 -0.8373 4.7981 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095067.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:02 Heat of formation + Delta-G solvation = -94.313788 kcal Electronic energy + Delta-G solvation = -21304.148094 eV Core-core repulsion = 17792.249979 eV Total energy + Delta-G solvation = -3511.898116 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.16179 -41.23145 -38.43697 -37.94128 -36.97859 -34.53200 -33.96386 -32.24759 -30.92915 -27.29330 -27.03435 -25.58519 -24.94930 -22.57439 -20.34449 -19.29973 -18.70762 -18.59033 -18.27704 -18.03916 -17.13075 -17.02737 -16.94960 -16.28813 -15.30829 -15.10490 -14.85342 -14.81489 -14.59082 -14.49794 -13.78552 -13.73145 -13.41375 -13.23342 -13.17409 -12.99003 -12.78040 -12.77706 -12.59168 -12.24742 -12.15378 -11.90468 -11.56666 -11.15286 -10.92031 -10.47740 -10.38431 -9.70206 -8.09535 -6.22780 -0.87421 -0.59794 -0.30643 1.46833 1.48619 1.55240 1.90466 2.24740 2.46505 2.62275 2.72742 3.08641 3.19590 3.27895 3.55053 3.57443 3.71237 4.06011 4.17342 4.47597 4.54642 4.68531 4.84392 4.96640 5.01926 5.11820 5.19362 5.25120 5.62581 5.69846 5.86656 6.11334 6.30307 6.38778 6.84141 7.46217 8.94545 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.026790 B = 0.005288 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.927227 B = 5293.907621 C = 5552.748344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.269 3.731 3 H 0.036 0.964 4 C -0.537 4.537 5 H 0.060 0.940 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 0.954 3.046 9 H -0.267 1.267 10 H -0.284 1.284 11 H -0.278 1.278 12 N -0.984 5.984 13 C 0.096 3.904 14 S 2.700 3.300 15 O -0.975 6.975 16 O -0.980 6.980 17 C -0.706 4.706 18 C 0.183 3.817 19 N -0.481 5.481 20 C 0.132 3.868 21 C 0.031 3.969 22 F -0.119 7.119 23 C -0.012 4.012 24 H 0.045 0.955 25 H 0.069 0.931 26 H 0.029 0.971 27 H 0.265 0.735 28 H 0.051 0.949 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.177 0.823 32 H 0.214 0.786 33 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.276 -1.489 14.783 15.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.165 3.835 3 H 0.053 0.947 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.780 3.220 9 H -0.192 1.192 10 H -0.209 1.209 11 H -0.204 1.204 12 N -0.824 5.824 13 C -0.049 4.049 14 S 2.790 3.210 15 O -0.965 6.965 16 O -0.970 6.970 17 C -0.793 4.793 18 C 0.026 3.974 19 N -0.189 5.189 20 C -0.026 4.026 21 C 0.009 3.991 22 F -0.098 7.098 23 C -0.039 4.039 24 H 0.064 0.936 25 H 0.088 0.912 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.194 0.806 32 H 0.230 0.770 33 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -2.796 -0.507 14.539 14.814 hybrid contribution -0.046 -1.003 -0.447 1.099 sum -2.842 -1.510 14.092 14.455 Atomic orbital electron populations 1.21958 0.97073 1.00372 1.00414 1.18531 0.92096 0.91938 0.80907 0.94655 1.21589 1.31779 1.13173 0.91150 0.92173 1.25598 0.95181 0.95675 1.01559 1.69951 1.37159 1.23648 1.24467 0.85677 0.78527 0.78986 0.78836 1.19239 1.20938 1.20365 1.57313 1.70392 1.20853 1.33850 1.21485 1.02209 0.79843 1.01345 1.01622 0.73892 0.72913 0.72555 1.93511 1.68677 1.59288 1.74988 1.93552 1.74305 1.57078 1.72099 1.32027 1.23046 1.08153 1.16120 1.22789 0.87640 0.89951 0.97066 1.67987 1.11950 1.36173 1.02810 1.23907 0.94989 0.89672 0.94034 1.18702 1.00631 0.94034 0.85775 1.91573 1.89473 1.81402 1.47303 1.21599 0.91364 1.01038 0.89905 0.93642 0.91197 0.95168 0.92602 0.93042 0.89758 0.90196 0.80632 0.76994 0.80269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.96 8.95 71.98 0.64 -5.32 16 2 C 0.27 12.52 2.62 44.24 0.12 12.63 16 3 H 0.04 1.84 6.91 -2.39 -0.02 1.82 16 4 C -0.54 -27.84 8.37 25.60 0.21 -27.62 16 5 H 0.06 3.08 7.65 -2.91 -0.02 3.05 16 6 C 0.02 1.05 5.30 84.66 0.45 1.50 16 7 N -0.91 -49.77 11.32 21.45 0.24 -49.53 16 8 Si 0.95 42.01 29.54 68.60 2.03 44.04 16 9 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 12 N -0.98 -37.61 3.06 -520.44 -1.59 -39.20 16 13 C 0.10 3.01 9.53 127.77 1.22 4.23 16 14 S 2.70 97.40 5.65 -56.49 -0.32 97.08 16 15 O -0.97 -35.64 16.43 -128.00 -2.10 -37.74 16 16 O -0.98 -42.56 15.87 -128.00 -2.03 -44.60 16 17 C -0.71 -20.61 5.99 22.35 0.13 -20.47 16 18 C 0.18 5.41 10.68 84.69 0.90 6.31 16 19 N -0.48 -12.62 10.36 -195.67 -2.03 -14.65 16 20 C 0.13 2.65 11.17 84.73 0.95 3.60 16 21 C 0.03 0.65 7.34 22.47 0.17 0.81 16 22 F -0.12 -2.28 17.28 44.97 0.78 -1.50 16 23 C -0.01 -0.28 9.64 22.51 0.22 -0.07 16 24 H 0.04 1.82 6.66 -2.39 -0.02 1.80 16 25 H 0.07 3.41 6.07 -2.39 -0.01 3.39 16 26 H 0.03 1.12 8.14 -2.38 -0.02 1.11 16 27 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.08 2.02 7.79 -2.39 -0.02 2.00 16 30 H 0.08 2.42 6.43 -2.39 -0.02 2.40 16 31 H 0.18 5.30 7.62 -2.91 -0.02 5.28 16 32 H 0.21 2.44 8.06 -2.91 -0.02 2.41 16 33 H 0.18 3.58 7.71 -2.91 -0.02 3.55 16 Total: -1.00 -63.88 299.93 1.12 -62.76 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: 1.14 Total: 7.74 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: 5.01 Total: -24.40 kcal Atomic # 7 Polarization: -100.00 SS G_CDS: -3.38 Total: -103.38 kcal Atomic # 8 Polarization: -78.20 SS G_CDS: -4.13 Total: -82.34 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.78 Total: -1.50 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 16 Polarization: 97.40 SS G_CDS: -0.32 Total: 97.08 kcal Total: -63.88 1.12 -62.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095067.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.555 kcal (2) G-P(sol) polarization free energy of solvation -63.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds