Wall clock time and date at job start Tue Mar 31 2020 05:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99597 * 2 1 4 4 H 1.48500 * 109.47332 * 270.00213 * 3 2 1 5 5 H 1.48504 * 109.47282 * 30.00252 * 3 2 1 6 6 H 1.48503 * 109.47368 * 150.00134 * 3 2 1 7 7 C 1.38719 * 120.00536 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99919 * 359.97438 * 7 2 1 9 9 S 1.76204 * 120.00459 * 179.97438 * 7 2 1 10 10 C 1.76196 * 100.00021 * 185.11743 * 9 7 2 11 11 C 1.39224 * 120.01901 * 265.52827 * 10 9 7 12 12 C 1.38138 * 120.19920 * 179.97438 * 11 10 9 13 13 C 1.38077 * 120.24587 * 359.74465 * 12 11 10 14 14 C 1.39644 * 120.03471 * 0.51105 * 13 12 11 15 15 C 1.47835 * 120.09898 * 179.76241 * 14 13 12 16 16 N 1.32110 * 126.67754 * 359.73032 * 15 14 13 17 17 C 1.34207 * 105.54863 * 179.97438 * 16 15 14 18 18 C 1.50700 * 126.19050 * 179.97438 * 17 16 15 19 19 C 1.52994 * 117.50228 * 188.62251 * 18 17 16 20 20 C 1.52995 * 117.49758 * 119.99781 * 18 17 16 21 21 N 1.30037 * 107.62570 * 0.02562 * 17 16 15 22 22 O 1.21290 * 110.48085 * 359.97438 * 21 17 16 23 23 C 1.38824 * 120.01889 * 85.51554 * 10 9 7 24 24 H 0.96996 * 120.00261 * 359.97438 * 1 2 3 25 25 H 1.08002 * 119.90395 * 0.02562 * 11 10 9 26 26 H 1.08002 * 119.87679 * 180.02562 * 12 11 10 27 27 H 1.07998 * 119.98406 * 180.25431 * 13 12 11 28 28 H 1.09001 * 115.55074 * 334.33162 * 18 17 16 29 29 H 1.09007 * 117.49714 * 0.02562 * 19 18 17 30 30 H 1.08997 * 117.50507 * 145.02204 * 19 18 17 31 31 H 1.09010 * 117.49938 * 214.98158 * 20 18 17 32 32 H 1.08996 * 117.50349 * 359.97438 * 20 18 17 33 33 H 1.08007 * 120.12479 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4404 0.7000 7 6 2.0100 -1.2013 -0.0005 8 1 1.4700 -2.1367 -0.0005 9 16 3.7720 -1.2013 -0.0012 10 6 4.0779 -2.9295 -0.1565 11 6 4.2919 -3.7039 0.9805 12 6 4.5316 -5.0592 0.8632 13 6 4.5553 -5.6561 -0.3817 14 6 4.3473 -4.8879 -1.5292 15 6 4.3777 -5.5246 -2.8631 16 7 4.5939 -6.8016 -3.1233 17 6 4.5277 -6.9129 -4.4591 18 6 4.7077 -8.1789 -5.2565 19 6 4.7926 -8.0490 -6.7786 20 6 3.5375 -8.6360 -6.1298 21 7 4.2814 -5.7305 -4.9409 22 8 4.1909 -4.9176 -4.0453 23 6 4.1055 -3.5198 -1.4127 24 1 -0.4850 0.8400 0.0004 25 1 4.2696 -3.2438 1.9574 26 1 4.6964 -5.6551 1.7487 27 1 4.7390 -6.7168 -0.4683 28 1 5.3135 -8.9511 -4.7824 29 1 4.7188 -7.0478 -7.2032 30 1 5.4545 -8.7357 -7.3062 31 1 3.3737 -9.7090 -6.2305 32 1 2.6374 -8.0214 -6.1272 33 1 3.9392 -2.9217 -2.2965 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079942493.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:56 Heat of formation + Delta-G solvation = 116.584328 kcal Electronic energy + Delta-G solvation = -18833.379423 eV Core-core repulsion = 15761.395761 eV Total energy + Delta-G solvation = -3071.983662 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.46757 -38.82196 -37.90312 -35.34550 -32.94447 -32.55290 -30.78810 -30.07200 -25.74126 -25.41203 -24.55515 -22.74411 -22.71194 -22.14540 -20.35913 -18.36543 -18.01591 -17.60529 -16.68928 -15.80918 -15.68662 -15.10293 -14.91597 -14.76406 -14.09220 -13.52708 -13.03573 -12.89795 -12.88247 -12.40534 -12.23459 -11.99507 -11.87113 -11.45095 -11.35138 -11.16577 -11.08704 -11.01955 -10.83220 -10.65586 -10.01730 -9.96050 -9.25920 -9.13795 -8.59363 -8.21461 -7.20925 -6.37931 -4.14720 0.54801 1.46052 1.67006 2.33673 2.73122 2.81954 3.22881 3.33307 3.34434 3.44948 3.52598 3.86881 4.01353 4.21058 4.47034 4.54586 4.62230 4.82627 5.00681 5.05591 5.10074 5.21284 5.28408 5.38701 5.50300 5.64031 5.66464 5.70397 5.77057 5.84943 5.92978 6.08801 6.41912 6.51982 6.69637 6.96091 7.85995 8.15558 8.39464 9.05669 10.71347 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.022988 B = 0.003722 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.753091 B = 7521.875111 C = 8226.534585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.239 1.239 7 C -0.512 4.512 8 H 0.092 0.908 9 S -0.108 6.108 10 C -0.082 4.082 11 C -0.045 4.045 12 C -0.136 4.136 13 C -0.058 4.058 14 C -0.055 4.055 15 C 0.248 3.752 16 N -0.482 5.482 17 C 0.202 3.798 18 C -0.077 4.077 19 C -0.159 4.159 20 C -0.157 4.157 21 N -0.388 5.388 22 O 0.084 5.916 23 C -0.034 4.034 24 H 0.272 0.728 25 H 0.137 0.863 26 H 0.132 0.868 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.195 -14.291 -5.981 18.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.163 1.163 7 C -0.659 4.659 8 H 0.110 0.890 9 S 0.126 5.874 10 C -0.193 4.193 11 C -0.067 4.067 12 C -0.156 4.156 13 C -0.078 4.078 14 C -0.059 4.059 15 C 0.032 3.968 16 N -0.215 5.215 17 C -0.071 4.071 18 C -0.097 4.097 19 C -0.197 4.197 20 C -0.196 4.196 21 N -0.097 5.097 22 O 0.025 5.975 23 C -0.057 4.057 24 H 0.083 0.917 25 H 0.155 0.845 26 H 0.150 0.850 27 H 0.152 0.848 28 H 0.153 0.847 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.117 0.883 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 10.733 -13.513 -6.684 18.506 hybrid contribution -0.817 -0.147 -0.010 0.830 sum 9.916 -13.660 -6.694 18.159 Atomic orbital electron populations 1.69921 1.05875 1.27887 1.47350 1.24738 0.94503 0.98853 0.93229 0.86749 0.81610 0.83517 0.79976 1.19012 1.19761 1.16286 1.22249 0.86686 0.97758 1.59209 0.88990 1.83132 1.11279 0.97357 1.95633 1.22118 1.02165 1.01253 0.93728 1.21983 0.92748 0.93036 0.98926 1.21096 1.02460 0.95055 0.96945 1.21149 0.96117 0.99758 0.90799 1.17269 1.10003 0.93474 0.85164 1.26444 0.94003 0.86441 0.89893 1.72023 1.22126 1.14894 1.12497 1.24660 1.00111 0.94354 0.87968 1.20038 1.05424 0.92724 0.91481 1.23078 1.00655 1.03655 0.92315 1.23081 0.92860 1.02040 1.01575 1.74547 1.21816 1.00909 1.12412 1.85427 1.64812 1.34740 1.12481 1.21908 0.93070 0.92061 0.98679 0.91742 0.84533 0.85011 0.84833 0.84713 0.87753 0.87482 0.87374 0.88340 0.84211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.63 13.97 55.49 0.78 -24.85 16 2 C 0.10 2.68 5.50 -17.46 -0.10 2.59 16 3 Si 0.86 20.35 27.73 -169.99 -4.71 15.63 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.24 -5.47 6.74 56.52 0.38 -5.09 16 7 C -0.51 -14.12 10.00 30.91 0.31 -13.81 16 8 H 0.09 2.76 8.02 -52.48 -0.42 2.34 16 9 S -0.11 -2.48 19.38 -107.50 -2.08 -4.56 16 10 C -0.08 -1.59 5.45 -39.00 -0.21 -1.80 16 11 C -0.05 -0.74 9.79 -39.25 -0.38 -1.13 16 12 C -0.14 -1.83 10.02 -39.68 -0.40 -2.23 16 13 C -0.06 -0.82 9.70 -39.12 -0.38 -1.20 16 14 C -0.05 -0.88 5.87 -105.01 -0.62 -1.50 16 15 C 0.25 4.02 8.01 -13.84 -0.11 3.91 16 16 N -0.48 -7.52 11.25 -10.16 -0.11 -7.64 16 17 C 0.20 2.93 7.73 -156.56 -1.21 1.72 16 18 C -0.08 -0.81 6.33 -91.78 -0.58 -1.39 16 19 C -0.16 -1.37 10.14 -26.73 -0.27 -1.64 16 20 C -0.16 -1.37 10.23 -26.73 -0.27 -1.64 16 21 N -0.39 -6.21 11.75 31.19 0.37 -5.84 16 22 O 0.08 1.40 11.13 16.66 0.19 1.58 16 23 C -0.03 -0.62 9.48 -38.92 -0.37 -0.99 16 24 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.14 2.08 8.06 -52.49 -0.42 1.65 16 26 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 27 H 0.13 1.65 7.87 -52.49 -0.41 1.24 16 28 H 0.14 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.10 1.04 7.91 -51.93 -0.41 0.63 16 30 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.11 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.14 2.51 7.95 -52.48 -0.42 2.10 16 LS Contribution 313.16 15.07 4.72 4.72 Total: -1.00 -30.33 313.16 -8.81 -39.14 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -3.35 Total: 0.93 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -4.59 Total: -19.11 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 1.03 Total: -38.33 kcal Atomic # 8 Polarization: 1.40 SS G_CDS: 0.19 Total: 1.58 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.71 Total: 15.63 kcal Atomic # 16 Polarization: -2.48 SS G_CDS: -2.08 Total: -4.56 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.33 -8.81 -39.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079942493.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.722 kcal (2) G-P(sol) polarization free energy of solvation -30.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds