Wall clock time and date at job start Tue Mar 31 2020 05:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99597 * 2 1 4 4 H 1.48500 * 109.47332 * 270.00213 * 3 2 1 5 5 H 1.48504 * 109.47282 * 30.00252 * 3 2 1 6 6 H 1.48503 * 109.47368 * 150.00134 * 3 2 1 7 7 C 1.38719 * 120.00536 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99919 * 359.97438 * 7 2 1 9 9 S 1.76204 * 120.00459 * 179.97438 * 7 2 1 10 10 C 1.76196 * 100.00021 * 185.11743 * 9 7 2 11 11 C 1.39224 * 120.01901 * 265.52827 * 10 9 7 12 12 C 1.38138 * 120.19920 * 179.97438 * 11 10 9 13 13 C 1.38077 * 120.24587 * 359.74465 * 12 11 10 14 14 C 1.39644 * 120.03471 * 0.51105 * 13 12 11 15 15 C 1.47835 * 120.09898 * 179.76241 * 14 13 12 16 16 N 1.32110 * 126.67754 * 359.73032 * 15 14 13 17 17 C 1.34207 * 105.54863 * 179.97438 * 16 15 14 18 18 C 1.50700 * 126.19050 * 179.97438 * 17 16 15 19 19 C 1.52994 * 117.50228 * 188.62251 * 18 17 16 20 20 C 1.52995 * 117.49758 * 119.99781 * 18 17 16 21 21 N 1.30037 * 107.62570 * 0.02562 * 17 16 15 22 22 O 1.21290 * 110.48085 * 359.97438 * 21 17 16 23 23 C 1.38824 * 120.01889 * 85.51554 * 10 9 7 24 24 H 0.96996 * 120.00261 * 359.97438 * 1 2 3 25 25 H 1.08002 * 119.90395 * 0.02562 * 11 10 9 26 26 H 1.08002 * 119.87679 * 180.02562 * 12 11 10 27 27 H 1.07998 * 119.98406 * 180.25431 * 13 12 11 28 28 H 1.09001 * 115.55074 * 334.33162 * 18 17 16 29 29 H 1.09007 * 117.49714 * 0.02562 * 19 18 17 30 30 H 1.08997 * 117.50507 * 145.02204 * 19 18 17 31 31 H 1.09010 * 117.49938 * 214.98158 * 20 18 17 32 32 H 1.08996 * 117.50349 * 359.97438 * 20 18 17 33 33 H 1.08007 * 120.12479 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4404 0.7000 7 6 2.0100 -1.2013 -0.0005 8 1 1.4700 -2.1367 -0.0005 9 16 3.7720 -1.2013 -0.0012 10 6 4.0779 -2.9295 -0.1565 11 6 4.2919 -3.7039 0.9805 12 6 4.5316 -5.0592 0.8632 13 6 4.5553 -5.6561 -0.3817 14 6 4.3473 -4.8879 -1.5292 15 6 4.3777 -5.5246 -2.8631 16 7 4.5939 -6.8016 -3.1233 17 6 4.5277 -6.9129 -4.4591 18 6 4.7077 -8.1789 -5.2565 19 6 4.7926 -8.0490 -6.7786 20 6 3.5375 -8.6360 -6.1298 21 7 4.2814 -5.7305 -4.9409 22 8 4.1909 -4.9176 -4.0453 23 6 4.1055 -3.5198 -1.4127 24 1 -0.4850 0.8400 0.0004 25 1 4.2696 -3.2438 1.9574 26 1 4.6964 -5.6551 1.7487 27 1 4.7390 -6.7168 -0.4683 28 1 5.3135 -8.9511 -4.7824 29 1 4.7188 -7.0478 -7.2032 30 1 5.4545 -8.7357 -7.3062 31 1 3.3737 -9.7090 -6.2305 32 1 2.6374 -8.0214 -6.1272 33 1 3.9392 -2.9217 -2.2965 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079942493.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:56 Heat of formation + Delta-G solvation = 98.525001 kcal Electronic energy + Delta-G solvation = -18834.162534 eV Core-core repulsion = 15761.395761 eV Total energy + Delta-G solvation = -3072.766773 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -46.67077 -40.10836 -38.73158 -36.48549 -34.69678 -34.14948 -32.08733 -31.32395 -27.90122 -26.44842 -25.79427 -23.90258 -23.50294 -23.34036 -21.44886 -20.01991 -19.25183 -19.07313 -17.99774 -17.12512 -16.92964 -16.72873 -16.13560 -15.95888 -15.31323 -14.95552 -14.71442 -14.32230 -13.95476 -13.62852 -13.45803 -13.30782 -13.18002 -13.05330 -12.68939 -12.54123 -12.41397 -12.22485 -12.05796 -11.83044 -11.57233 -11.20217 -11.08291 -10.88384 -9.90946 -9.70648 -9.13186 -8.51695 -6.26244 -0.72274 0.11631 0.48251 1.06461 1.14810 1.33751 1.46179 1.51914 1.68215 2.22989 2.31287 2.48113 2.70345 2.86747 2.90874 2.98698 3.56187 3.73595 3.86397 3.91553 3.99252 4.06898 4.28434 4.38616 4.48301 4.60592 4.65446 4.70034 4.83093 4.87689 4.99861 5.12179 5.16769 5.28451 5.37735 5.70863 5.73335 6.13526 6.90971 6.93515 8.61644 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.022988 B = 0.003722 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.753091 B = 7521.875111 C = 8226.534585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.042 3.958 3 Si 0.920 3.080 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.224 1.224 7 C -0.525 4.525 8 H 0.048 0.952 9 S -0.104 6.104 10 C -0.113 4.113 11 C -0.049 4.049 12 C -0.116 4.116 13 C -0.044 4.044 14 C -0.058 4.058 15 C 0.242 3.758 16 N -0.484 5.484 17 C 0.205 3.795 18 C -0.098 4.098 19 C -0.148 4.148 20 C -0.148 4.148 21 N -0.407 5.407 22 O 0.061 5.939 23 C -0.047 4.047 24 H 0.277 0.723 25 H 0.147 0.853 26 H 0.179 0.821 27 H 0.160 0.840 28 H 0.156 0.844 29 H 0.086 0.914 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.080 0.920 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.137 -16.398 -5.694 21.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.163 4.163 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.186 1.186 6 H -0.148 1.148 7 C -0.672 4.672 8 H 0.067 0.933 9 S 0.130 5.870 10 C -0.224 4.224 11 C -0.070 4.070 12 C -0.135 4.135 13 C -0.063 4.063 14 C -0.063 4.063 15 C 0.026 3.974 16 N -0.217 5.217 17 C -0.068 4.068 18 C -0.118 4.118 19 C -0.186 4.186 20 C -0.186 4.186 21 N -0.119 5.119 22 O 0.008 5.992 23 C -0.070 4.070 24 H 0.087 0.913 25 H 0.165 0.835 26 H 0.197 0.803 27 H 0.178 0.822 28 H 0.174 0.826 29 H 0.104 0.896 30 H 0.156 0.844 31 H 0.157 0.843 32 H 0.099 0.901 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 12.681 -15.608 -6.382 21.099 hybrid contribution -1.405 0.251 -0.139 1.434 sum 11.277 -15.357 -6.521 20.138 Atomic orbital electron populations 1.70033 1.07713 1.29164 1.48860 1.25703 0.95348 1.02593 0.92698 0.85800 0.80900 0.78883 0.80372 1.18568 1.18594 1.14763 1.22409 0.89980 0.96213 1.58605 0.93317 1.82695 1.06860 1.01593 1.95829 1.22020 1.05553 0.99368 0.95470 1.22176 0.92274 0.94283 0.98272 1.21526 0.99819 0.93847 0.98320 1.21542 0.93847 1.00793 0.90140 1.17340 1.10113 0.92752 0.86068 1.26552 0.94173 0.86862 0.89850 1.72027 1.22280 1.14283 1.13153 1.25456 0.98123 0.95222 0.87950 1.20406 1.07462 0.91620 0.92287 1.23172 1.01080 1.03484 0.90874 1.23183 0.91802 1.03506 1.00099 1.74554 1.23319 1.01552 1.12503 1.85407 1.65524 1.35438 1.12866 1.21753 0.94175 0.93167 0.97907 0.91330 0.83478 0.80344 0.82202 0.82595 0.89571 0.84363 0.84315 0.90138 0.85580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.83 13.97 21.63 0.30 -55.53 16 2 C 0.04 2.39 5.50 84.84 0.47 2.86 16 3 Si 0.92 42.44 27.73 68.60 1.90 44.34 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 6 H -0.22 -9.74 6.74 99.48 0.67 -9.07 16 7 C -0.53 -30.13 10.00 67.94 0.68 -29.45 16 8 H 0.05 3.11 8.02 -2.91 -0.02 3.08 16 9 S -0.10 -4.83 19.38 -56.49 -1.09 -5.92 16 10 C -0.11 -4.42 5.45 22.65 0.12 -4.30 16 11 C -0.05 -1.52 9.79 22.48 0.22 -1.30 16 12 C -0.12 -2.73 10.02 22.21 0.22 -2.50 16 13 C -0.04 -1.11 9.70 22.57 0.22 -0.89 16 14 C -0.06 -1.85 5.87 -20.11 -0.12 -1.97 16 15 C 0.24 7.82 8.01 87.31 0.70 8.52 16 16 N -0.48 -14.53 11.25 -302.76 -3.41 -17.94 16 17 C 0.20 5.80 7.73 138.53 1.07 6.87 16 18 C -0.10 -1.86 6.33 -11.54 -0.07 -1.93 16 19 C -0.15 -2.22 10.14 30.59 0.31 -1.91 16 20 C -0.15 -2.23 10.23 30.59 0.31 -1.92 16 21 N -0.41 -13.18 11.75 -58.64 -0.69 -13.87 16 22 O 0.06 2.11 11.13 69.69 0.78 2.89 16 23 C -0.05 -1.75 9.48 22.70 0.22 -1.53 16 24 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 25 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 26 H 0.18 2.62 8.06 -2.91 -0.02 2.59 16 27 H 0.16 3.29 7.87 -2.91 -0.02 3.27 16 28 H 0.16 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.09 1.64 7.91 -2.38 -0.02 1.62 16 30 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.14 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.13 4.86 7.95 -2.91 -0.02 4.84 16 Total: -1.00 -69.17 313.16 3.24 -65.93 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 1.10 Total: 9.56 kcal Atomic # 6 Polarization: -33.81 SS G_CDS: 4.35 Total: -29.46 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -3.79 Total: -87.33 kcal Atomic # 8 Polarization: 2.11 SS G_CDS: 0.78 Total: 2.89 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.90 Total: 44.34 kcal Atomic # 16 Polarization: -4.83 SS G_CDS: -1.09 Total: -5.92 kcal Total: -69.17 3.24 -65.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079942493.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.452 kcal (2) G-P(sol) polarization free energy of solvation -69.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds