Wall clock time and date at job start Tue Mar 31 2020 05:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99964 * 2 1 4 4 H 1.48500 * 109.47301 * 270.00693 * 3 2 1 5 5 H 1.48505 * 109.47145 * 30.00331 * 3 2 1 6 6 H 1.48492 * 109.47199 * 150.00389 * 3 2 1 7 7 C 1.37874 * 120.00397 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00683 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99670 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47006 * 179.97438 * 10 9 7 12 12 S 1.81405 * 109.46817 * 180.02562 * 11 10 9 13 13 O 1.42095 * 109.47054 * 296.38735 * 12 11 10 14 14 C 1.81399 * 102.99706 * 180.02562 * 12 11 10 15 15 C 1.50702 * 109.47410 * 180.02562 * 14 12 11 16 16 C 1.38227 * 119.98630 * 269.73024 * 15 14 12 17 17 C 1.38190 * 120.04956 * 179.72539 * 16 15 14 18 18 C 1.38493 * 120.02103 * 0.53985 * 17 16 15 19 19 F 1.35107 * 120.00973 * 179.75211 * 18 17 16 20 20 C 1.38393 * 119.97680 * 359.73212 * 18 17 16 21 21 C 1.38441 * 119.95090 * 359.97438 * 20 18 17 22 22 F 1.35103 * 120.01018 * 179.97438 * 21 20 18 23 23 H 0.97002 * 120.00183 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47022 * 60.00527 * 9 7 2 25 25 H 1.09002 * 109.47378 * 300.00128 * 9 7 2 26 26 H 1.09004 * 109.47407 * 60.00224 * 10 9 7 27 27 H 1.09007 * 109.47535 * 300.00287 * 10 9 7 28 28 H 1.09000 * 109.46988 * 60.00370 * 11 10 9 29 29 H 1.08998 * 109.46864 * 299.99964 * 11 10 9 30 30 H 1.09004 * 109.47089 * 299.99939 * 14 12 11 31 31 H 1.09004 * 109.47568 * 59.99949 * 14 12 11 32 32 H 1.08002 * 119.97836 * 359.97107 * 16 15 14 33 33 H 1.07998 * 119.99150 * 180.24962 * 17 16 15 34 34 H 1.08006 * 120.02591 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 0.0001 12 16 2.6592 -6.3658 0.0009 13 8 3.4196 -6.3395 -1.1992 14 6 1.5810 -7.8246 0.0008 15 6 2.4249 -9.0731 0.0020 16 6 2.8080 -9.6492 -1.1946 17 6 3.5866 -10.7909 -1.1951 18 6 3.9746 -11.3654 0.0039 19 9 4.7317 -12.4845 0.0032 20 6 3.5869 -10.7927 1.2026 21 6 2.8120 -9.6455 1.2018 22 9 2.4324 -9.0856 2.3713 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8720 -3.6043 0.8895 27 1 2.8721 -3.6043 -0.8905 28 1 0.8534 -5.0451 -0.8897 29 1 0.8540 -5.0445 0.8903 30 1 0.9515 -7.8111 0.8906 31 1 0.9521 -7.8116 -0.8894 32 1 2.5020 -9.2045 -2.1301 33 1 3.8888 -11.2379 -2.1306 34 1 3.8894 -11.2399 2.1380 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084731183.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:35 Heat of formation + Delta-G solvation = -121.091269 kcal Electronic energy + Delta-G solvation = -19363.965803 eV Core-core repulsion = 15830.986567 eV Total energy + Delta-G solvation = -3532.979236 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.32342 -49.27338 -39.25872 -35.55039 -34.46191 -32.95385 -32.04926 -31.14950 -27.72734 -27.02875 -23.60600 -23.47765 -22.18217 -20.30427 -18.53484 -17.60781 -17.43003 -16.49988 -16.29698 -16.24689 -15.77293 -15.67210 -15.11289 -14.91600 -14.73359 -14.43024 -14.33395 -14.02140 -13.60653 -12.94856 -12.44685 -12.40109 -12.23924 -12.09469 -11.90404 -11.69808 -11.43546 -10.89138 -10.83031 -10.71424 -10.31070 -9.82334 -9.55087 -9.37575 -9.15987 -8.76012 -8.37634 -8.01752 -6.02486 -4.05223 0.47832 0.64395 1.63629 2.71708 3.05069 3.31483 3.37569 3.41216 3.50901 3.82568 4.03238 4.19453 4.28222 4.44694 4.47706 4.72937 5.04479 5.29744 5.33250 5.41947 5.42377 5.51066 5.55937 5.65512 5.67712 5.86144 6.15252 6.39261 6.47235 6.66185 7.01132 7.63265 7.75402 7.96699 8.38423 9.01715 9.59213 11.08793 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.043053 B = 0.002755 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.199930 B =10160.972518 C =10318.388421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.094 4.094 11 C -0.431 4.431 12 S 1.231 4.769 13 O -0.840 6.840 14 C -0.418 4.418 15 C -0.100 4.100 16 C -0.055 4.055 17 C -0.157 4.157 18 C 0.123 3.877 19 F -0.132 7.132 20 C -0.188 4.188 21 C 0.133 3.867 22 F -0.122 7.122 23 H 0.261 0.739 24 H 0.014 0.986 25 H 0.020 0.980 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.115 0.885 30 H 0.131 0.869 31 H 0.102 0.898 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.664 -23.802 3.713 24.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.011 4.011 10 C -0.133 4.133 11 C -0.570 4.570 12 S 1.432 4.568 13 O -0.835 6.835 14 C -0.551 4.551 15 C -0.103 4.103 16 C -0.074 4.074 17 C -0.176 4.176 18 C 0.103 3.897 19 F -0.111 7.111 20 C -0.207 4.207 21 C 0.112 3.888 22 F -0.100 7.100 23 H 0.070 0.930 24 H 0.033 0.967 25 H 0.038 0.962 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.101 0.899 29 H 0.133 0.867 30 H 0.149 0.851 31 H 0.121 0.879 32 H 0.160 0.840 33 H 0.161 0.839 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.506 -23.695 3.738 24.612 hybrid contribution -1.042 0.797 -1.641 2.101 sum 4.463 -22.897 2.097 23.422 Atomic orbital electron populations 1.69960 1.06098 1.26668 1.50853 1.25027 0.94863 0.99326 0.95245 0.86578 0.79885 0.83326 0.78143 1.20687 1.21184 1.19737 1.21273 0.93168 0.91016 1.50667 0.92512 1.19097 0.93788 0.90883 0.97376 1.21331 0.98996 0.91775 1.01175 1.27666 1.11474 1.10593 1.07315 1.70910 0.88039 0.85449 1.12422 1.93104 1.55750 1.83724 1.50928 1.26775 1.09965 1.09387 1.08990 1.19276 1.01335 0.97463 0.92197 1.20865 0.95073 0.93632 0.97843 1.21200 1.01078 0.97752 0.97591 1.17293 0.93889 0.84791 0.93722 1.91535 1.73246 1.48946 1.97357 1.21007 1.03011 0.97600 0.99110 1.17033 0.97708 0.92886 0.81133 1.91548 1.89124 1.84151 1.45213 0.92969 0.96734 0.96199 0.92043 0.92769 0.89930 0.86662 0.85119 0.87925 0.83977 0.83865 0.83073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.69 4.97 -27.88 -0.14 0.55 16 10 C -0.09 -1.89 5.16 -26.73 -0.14 -2.03 16 11 C -0.43 -6.62 5.92 37.16 0.22 -6.40 16 12 S 1.23 15.53 13.14 -107.50 -1.41 14.11 16 13 O -0.84 -15.38 18.14 -35.23 -0.64 -16.02 16 14 C -0.42 -4.16 5.87 36.01 0.21 -3.95 16 15 C -0.10 -1.02 5.15 -104.55 -0.54 -1.56 16 16 C -0.05 -0.54 9.70 -39.60 -0.38 -0.93 16 17 C -0.16 -1.39 10.03 -39.51 -0.40 -1.78 16 18 C 0.12 1.12 7.30 -39.43 -0.29 0.83 16 19 F -0.13 -1.24 17.27 2.25 0.04 -1.21 16 20 C -0.19 -1.61 10.01 -39.45 -0.39 -2.00 16 21 C 0.13 1.26 7.24 -39.43 -0.29 0.97 16 22 F -0.12 -1.12 16.47 2.25 0.04 -1.08 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.08 1.34 8.14 -51.92 -0.42 0.92 16 29 H 0.12 1.48 8.14 -51.92 -0.42 1.06 16 30 H 0.13 1.02 7.64 -51.92 -0.40 0.62 16 31 H 0.10 1.01 8.08 -51.92 -0.42 0.59 16 32 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.15 0.99 8.06 -52.48 -0.42 0.56 16 LS Contribution 319.87 15.07 4.82 4.82 Total: -1.00 -34.63 319.87 -8.14 -42.78 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: -4.16 Total: -3.94 kcal Atomic # 6 Polarization: -27.39 SS G_CDS: -2.54 Total: -29.93 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.74 Total: -26.19 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.64 Total: -16.02 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.08 Total: -2.29 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 15.53 SS G_CDS: -1.41 Total: 14.11 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.63 -8.14 -42.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084731183.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.316 kcal (2) G-P(sol) polarization free energy of solvation -34.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds