Wall clock time and date at job start Tue Mar 31 2020 05:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99964 * 2 1 4 4 H 1.48500 * 109.47301 * 270.00693 * 3 2 1 5 5 H 1.48505 * 109.47145 * 30.00331 * 3 2 1 6 6 H 1.48492 * 109.47199 * 150.00389 * 3 2 1 7 7 C 1.37874 * 120.00397 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00683 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99670 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47006 * 179.97438 * 10 9 7 12 12 S 1.81405 * 109.46817 * 180.02562 * 11 10 9 13 13 O 1.42095 * 109.47054 * 296.38735 * 12 11 10 14 14 C 1.81399 * 102.99706 * 180.02562 * 12 11 10 15 15 C 1.50702 * 109.47410 * 180.02562 * 14 12 11 16 16 C 1.38227 * 119.98630 * 269.73024 * 15 14 12 17 17 C 1.38190 * 120.04956 * 179.72539 * 16 15 14 18 18 C 1.38493 * 120.02103 * 0.53985 * 17 16 15 19 19 F 1.35107 * 120.00973 * 179.75211 * 18 17 16 20 20 C 1.38393 * 119.97680 * 359.73212 * 18 17 16 21 21 C 1.38441 * 119.95090 * 359.97438 * 20 18 17 22 22 F 1.35103 * 120.01018 * 179.97438 * 21 20 18 23 23 H 0.97002 * 120.00183 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47022 * 60.00527 * 9 7 2 25 25 H 1.09002 * 109.47378 * 300.00128 * 9 7 2 26 26 H 1.09004 * 109.47407 * 60.00224 * 10 9 7 27 27 H 1.09007 * 109.47535 * 300.00287 * 10 9 7 28 28 H 1.09000 * 109.46988 * 60.00370 * 11 10 9 29 29 H 1.08998 * 109.46864 * 299.99964 * 11 10 9 30 30 H 1.09004 * 109.47089 * 299.99939 * 14 12 11 31 31 H 1.09004 * 109.47568 * 59.99949 * 14 12 11 32 32 H 1.08002 * 119.97836 * 359.97107 * 16 15 14 33 33 H 1.07998 * 119.99150 * 180.24962 * 17 16 15 34 34 H 1.08006 * 120.02591 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 0.0001 12 16 2.6592 -6.3658 0.0009 13 8 3.4196 -6.3395 -1.1992 14 6 1.5810 -7.8246 0.0008 15 6 2.4249 -9.0731 0.0020 16 6 2.8080 -9.6492 -1.1946 17 6 3.5866 -10.7909 -1.1951 18 6 3.9746 -11.3654 0.0039 19 9 4.7317 -12.4845 0.0032 20 6 3.5869 -10.7927 1.2026 21 6 2.8120 -9.6455 1.2018 22 9 2.4324 -9.0856 2.3713 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8720 -3.6043 0.8895 27 1 2.8721 -3.6043 -0.8905 28 1 0.8534 -5.0451 -0.8897 29 1 0.8540 -5.0445 0.8903 30 1 0.9515 -7.8111 0.8906 31 1 0.9521 -7.8116 -0.8894 32 1 2.5020 -9.2045 -2.1301 33 1 3.8888 -11.2379 -2.1306 34 1 3.8894 -11.2399 2.1380 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084731183.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:34 Heat of formation + Delta-G solvation = -142.542055 kcal Electronic energy + Delta-G solvation = -19364.895979 eV Core-core repulsion = 15830.986567 eV Total energy + Delta-G solvation = -3533.909412 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.03667 -49.97843 -39.97073 -36.83552 -36.30779 -34.02978 -33.71385 -31.84320 -29.47248 -27.95809 -25.37711 -24.27136 -23.03307 -21.99663 -19.24936 -18.74021 -18.36027 -18.22413 -17.15488 -17.03539 -16.65173 -16.55040 -16.40942 -16.26481 -15.98309 -15.47103 -15.31530 -14.96139 -14.68868 -14.30244 -13.89844 -13.89386 -13.31539 -13.15892 -13.01087 -12.81516 -12.71027 -12.53006 -12.47310 -12.36321 -11.86472 -11.60567 -11.31707 -10.97825 -10.57090 -10.12422 -9.73011 -9.09112 -8.21585 -6.32958 -0.30255 -0.04988 0.63591 1.39894 1.40976 1.52575 1.67369 2.32414 2.40441 2.76604 2.81700 3.11503 3.30298 3.45923 3.53200 3.83189 4.01945 4.05549 4.18649 4.32325 4.56495 4.62424 4.72189 4.81152 4.85307 4.92781 4.98575 5.13762 5.14984 5.18627 5.49493 5.69538 5.69578 5.83082 6.22694 6.83930 7.36529 8.90006 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.043053 B = 0.002755 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.199930 B =10160.972518 C =10318.388421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.260 1.260 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.027 3.973 10 C -0.089 4.089 11 C -0.437 4.437 12 S 1.284 4.716 13 O -0.899 6.899 14 C -0.408 4.408 15 C -0.116 4.116 16 C -0.068 4.068 17 C -0.157 4.157 18 C 0.118 3.882 19 F -0.134 7.134 20 C -0.184 4.184 21 C 0.132 3.868 22 F -0.119 7.119 23 H 0.264 0.736 24 H -0.018 1.018 25 H 0.008 0.992 26 H 0.083 0.917 27 H 0.033 0.967 28 H 0.068 0.932 29 H 0.143 0.857 30 H 0.160 0.840 31 H 0.106 0.894 32 H 0.142 0.858 33 H 0.161 0.839 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.393 -24.829 4.817 25.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.203 1.203 5 H -0.204 1.204 6 H -0.184 1.184 7 C -0.586 4.586 8 H 0.078 0.922 9 C -0.011 4.011 10 C -0.128 4.128 11 C -0.574 4.574 12 S 1.486 4.514 13 O -0.895 6.895 14 C -0.543 4.543 15 C -0.119 4.119 16 C -0.087 4.087 17 C -0.175 4.175 18 C 0.098 3.902 19 F -0.113 7.113 20 C -0.203 4.203 21 C 0.111 3.889 22 F -0.098 7.098 23 H 0.073 0.927 24 H 0.000 1.000 25 H 0.026 0.974 26 H 0.102 0.898 27 H 0.052 0.948 28 H 0.087 0.913 29 H 0.162 0.838 30 H 0.178 0.822 31 H 0.125 0.875 32 H 0.160 0.840 33 H 0.178 0.822 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 6.249 -24.687 4.842 25.922 hybrid contribution -1.310 0.944 -1.973 2.550 sum 4.939 -23.743 2.868 24.420 Atomic orbital electron populations 1.70084 1.07773 1.27833 1.51670 1.25982 0.95804 1.03380 0.94663 0.85459 0.78908 0.78432 0.78355 1.20254 1.20407 1.18381 1.21760 0.93683 0.92546 1.50627 0.92157 1.19023 0.94313 0.92655 0.95126 1.21126 0.98038 0.92406 1.01229 1.27673 1.11977 1.09689 1.08088 1.70262 0.86466 0.84649 1.09999 1.92999 1.58508 1.84921 1.53028 1.26627 1.09580 1.07369 1.10768 1.19347 1.02079 0.97728 0.92739 1.20995 0.95565 0.94193 0.97930 1.21396 1.00389 0.97305 0.98456 1.17410 0.93908 0.84789 0.94069 1.91534 1.73308 1.49048 1.97379 1.21225 1.02121 0.97083 0.99879 1.17040 0.97792 0.93116 0.80931 1.91558 1.89102 1.84128 1.44968 0.92708 1.00003 0.97351 0.89846 0.94847 0.91315 0.83842 0.82201 0.87545 0.83978 0.82172 0.81004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.00 13.29 21.45 0.28 -56.71 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 7 C -0.55 -31.59 9.11 25.60 0.23 -31.36 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.43 4.97 29.85 0.15 1.58 16 10 C -0.09 -3.64 5.16 30.60 0.16 -3.48 16 11 C -0.44 -13.16 5.92 71.98 0.43 -12.74 16 12 S 1.28 30.87 13.14 -56.49 -0.74 30.13 16 13 O -0.90 -32.87 18.14 -148.98 -2.70 -35.57 16 14 C -0.41 -7.22 5.87 71.24 0.42 -6.80 16 15 C -0.12 -2.15 5.15 -19.82 -0.10 -2.25 16 16 C -0.07 -1.24 9.70 22.26 0.22 -1.03 16 17 C -0.16 -2.51 10.03 22.32 0.22 -2.28 16 18 C 0.12 1.91 7.30 22.37 0.16 2.08 16 19 F -0.13 -2.27 17.27 44.97 0.78 -1.49 16 20 C -0.18 -2.71 10.01 22.36 0.22 -2.48 16 21 C 0.13 2.18 7.24 22.37 0.16 2.34 16 22 F -0.12 -1.85 16.47 44.97 0.74 -1.11 16 23 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 24 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 25 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.08 2.98 8.14 -2.38 -0.02 2.96 16 27 H 0.03 1.46 8.14 -2.38 -0.02 1.45 16 28 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.14 3.44 8.14 -2.39 -0.02 3.42 16 30 H 0.16 1.94 7.64 -2.39 -0.02 1.92 16 31 H 0.11 1.90 8.08 -2.39 -0.02 1.88 16 32 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 33 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 34 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -75.73 319.87 4.22 -71.51 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: 1.10 Total: 2.72 kcal Atomic # 6 Polarization: -58.72 SS G_CDS: 2.73 Total: -55.99 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: 0.28 Total: -56.71 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -2.70 Total: -35.57 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 1.52 Total: -2.60 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: 30.87 SS G_CDS: -0.74 Total: 30.13 kcal Total: -75.73 4.22 -71.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084731183.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.036 kcal (2) G-P(sol) polarization free energy of solvation -75.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds