Wall clock time and date at job start Tue Mar 31 2020 06:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99861 * 2 1 4 4 H 1.48491 * 109.47248 * 270.00045 * 3 2 1 5 5 H 1.48501 * 109.47269 * 30.00010 * 3 2 1 6 6 H 1.48506 * 109.46892 * 149.99913 * 3 2 1 7 7 C 1.37878 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00179 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99714 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46785 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99719 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99837 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99767 * 179.97438 * 11 10 9 14 14 N 1.46901 * 109.46943 * 180.02562 * 13 11 10 15 15 C 1.40173 * 110.99933 * 180.02562 * 14 13 11 16 16 C 1.38960 * 120.06269 * 299.73143 * 15 14 13 17 17 F 1.35099 * 120.03226 * 359.97438 * 16 15 14 18 18 C 1.38344 * 119.93900 * 179.72450 * 16 15 14 19 19 C 1.38464 * 120.05945 * 0.57027 * 18 16 15 20 20 F 1.35102 * 119.93664 * 179.72556 * 19 18 16 21 21 C 1.38451 * 120.11867 * 359.69748 * 19 18 16 22 22 C 1.38349 * 120.06447 * 0.02562 * 21 19 18 23 23 F 1.35092 * 120.02788 * 180.02562 * 22 21 19 24 24 H 0.97000 * 119.99968 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46739 * 59.99909 * 9 7 2 26 26 H 1.08995 * 109.47079 * 299.99751 * 9 7 2 27 27 H 0.96997 * 119.99567 * 0.02562 * 10 9 7 28 28 H 1.09004 * 109.46763 * 60.00720 * 13 11 10 29 29 H 1.08995 * 109.47483 * 300.00377 * 13 11 10 30 30 H 1.00901 * 111.00067 * 303.95401 * 14 13 11 31 31 H 1.08003 * 119.97456 * 180.26941 * 18 16 15 32 32 H 1.08004 * 119.96500 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7538 -4.8833 0.0011 12 8 0.5614 -5.1049 0.0011 13 6 2.7331 -6.0287 0.0005 14 7 1.9986 -7.3009 0.0006 15 6 2.8807 -8.3903 0.0006 16 6 3.7823 -8.5560 -1.0437 17 9 3.8094 -7.6674 -2.0610 18 6 4.6557 -9.6289 -1.0382 19 6 4.6240 -10.5437 0.0007 20 9 5.4742 -11.5936 0.0008 21 6 3.7229 -10.3840 1.0397 22 6 2.8511 -9.3098 1.0422 23 9 1.9726 -9.1544 2.0566 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5570 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 3.1567 -3.4353 0.0009 28 1 3.3604 -5.9709 0.8901 29 1 3.3591 -5.9711 -0.8899 30 1 1.3625 -7.3511 0.7822 31 1 5.3596 -9.7558 -1.8475 32 1 3.7006 -11.0988 1.8490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088722021.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:00 Heat of formation + Delta-G solvation = -142.692521 kcal Electronic energy + Delta-G solvation = -21719.704803 eV Core-core repulsion = 17651.868441 eV Total energy + Delta-G solvation = -4067.836361 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.46405 -49.41103 -49.32800 -39.62333 -38.70901 -35.74580 -34.22073 -32.39631 -30.99323 -30.03096 -27.75379 -25.85780 -23.74108 -22.85696 -22.22668 -19.92007 -18.97337 -18.62163 -17.55875 -16.93374 -16.58508 -16.38594 -16.24467 -15.77492 -15.69498 -15.54485 -15.46460 -15.19036 -14.95284 -14.65447 -14.57682 -13.77492 -13.31111 -12.99995 -12.71410 -12.41091 -12.34161 -11.99762 -11.97736 -11.60355 -11.02005 -10.91424 -10.38217 -10.31275 -9.44539 -9.37987 -9.15427 -8.78336 -8.27270 -7.96867 -6.20128 -4.27547 0.35872 0.39409 2.67020 3.09994 3.20574 3.22344 3.28113 3.30359 3.40451 3.76947 3.83452 4.01690 4.20866 4.32622 4.35114 4.91927 5.10996 5.15424 5.16588 5.21979 5.30940 5.34926 5.40852 5.42773 6.04631 6.49170 6.83340 7.24083 7.33200 7.46189 7.60705 7.92153 8.52026 8.71338 8.98290 9.38993 10.90032 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.032446 B = 0.003009 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.769105 B = 9303.011419 C = 9702.604632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.709 5.709 11 C 0.499 3.501 12 O -0.541 6.541 13 C 0.030 3.970 14 N -0.603 5.603 15 C 0.051 3.949 16 C 0.136 3.864 17 F -0.112 7.112 18 C -0.173 4.173 19 C 0.128 3.872 20 F -0.126 7.126 21 C -0.171 4.171 22 C 0.105 3.895 23 F -0.119 7.119 24 H 0.266 0.734 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.391 0.609 28 H 0.072 0.928 29 H 0.113 0.887 30 H 0.376 0.624 31 H 0.158 0.842 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.652 -20.712 1.005 23.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.358 5.358 11 C 0.282 3.718 12 O -0.419 6.419 13 C -0.100 4.100 14 N -0.229 5.229 15 C -0.052 4.052 16 C 0.114 3.886 17 F -0.090 7.090 18 C -0.193 4.193 19 C 0.107 3.893 20 F -0.104 7.104 21 C -0.192 4.192 22 C 0.081 3.919 23 F -0.098 7.098 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.224 0.776 28 H 0.090 0.910 29 H 0.131 0.869 30 H 0.201 0.799 31 H 0.176 0.824 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 10.435 -20.598 0.345 23.093 hybrid contribution 1.040 0.983 0.780 1.630 sum 11.474 -19.615 1.125 22.753 Atomic orbital electron populations 1.69974 1.06125 1.27390 1.48722 1.24957 0.94927 0.99497 0.94631 0.86399 0.79596 0.82560 0.78263 1.20417 1.20983 1.19730 1.21211 0.93283 0.90384 1.53450 0.91838 1.19143 0.88228 0.81755 0.97893 1.46423 1.11318 1.05847 1.72209 1.20063 0.89224 0.84189 0.78314 1.90695 1.16373 1.84585 1.50244 1.22192 0.96202 0.87396 1.04177 1.57147 1.16147 0.99497 1.50096 1.18937 0.96002 0.96461 0.93797 1.16475 0.97099 0.89570 0.85475 1.91556 1.95468 1.65721 1.56284 1.20987 1.02405 0.94753 1.01161 1.16655 0.91042 0.86374 0.95189 1.91556 1.68218 1.54267 1.96379 1.20943 0.97259 0.99831 1.01137 1.16993 0.92018 0.97529 0.85319 1.91555 1.66224 1.95196 1.56804 0.92382 0.95352 0.95411 0.77590 0.91040 0.86928 0.79888 0.82435 0.82643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.88 13.29 55.43 0.74 -25.14 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 7 C -0.54 -14.57 9.28 -34.44 -0.32 -14.89 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.25 6.53 5.43 -5.19 -0.03 6.50 16 10 N -0.71 -14.46 5.55 -61.47 -0.34 -14.80 16 11 C 0.50 9.64 7.87 -10.99 -0.09 9.56 16 12 O -0.54 -12.74 16.20 5.56 0.09 -12.65 16 13 C 0.03 0.42 5.84 -4.98 -0.03 0.39 16 14 N -0.60 -8.37 6.13 -59.36 -0.36 -8.74 16 15 C 0.05 0.57 5.79 -83.51 -0.48 0.09 16 16 C 0.14 1.41 6.99 -39.28 -0.27 1.13 16 17 F -0.11 -1.32 15.11 2.25 0.03 -1.28 16 18 C -0.17 -1.40 10.00 -39.46 -0.39 -1.79 16 19 C 0.13 1.03 7.30 -39.42 -0.29 0.74 16 20 F -0.13 -1.03 17.26 2.25 0.04 -0.99 16 21 C -0.17 -1.36 10.00 -39.46 -0.39 -1.76 16 22 C 0.10 1.04 7.29 -39.27 -0.29 0.75 16 23 F -0.12 -1.29 16.25 2.25 0.04 -1.25 16 24 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.39 6.72 8.32 -40.82 -0.34 6.38 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.11 1.44 6.08 -51.93 -0.32 1.12 16 30 H 0.38 5.32 7.35 -39.29 -0.29 5.03 16 31 H 0.16 0.95 8.06 -52.48 -0.42 0.52 16 32 H 0.16 0.92 8.06 -52.48 -0.42 0.50 16 LS Contribution 300.09 15.07 4.52 4.52 Total: -1.00 -31.50 300.09 -5.54 -37.04 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -2.59 Total: 5.33 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -2.68 Total: 2.37 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 0.03 Total: -48.68 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.09 Total: -12.65 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.11 Total: -3.53 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.50 -5.54 -37.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088722021.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.651 kcal (2) G-P(sol) polarization free energy of solvation -31.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds