Wall clock time and date at job start Tue Mar 31 2020 06:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99861 * 2 1 4 4 H 1.48491 * 109.47248 * 270.00045 * 3 2 1 5 5 H 1.48501 * 109.47269 * 30.00010 * 3 2 1 6 6 H 1.48506 * 109.46892 * 149.99913 * 3 2 1 7 7 C 1.37878 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00179 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99714 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46785 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99719 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99837 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99767 * 179.97438 * 11 10 9 14 14 N 1.46901 * 109.46943 * 180.02562 * 13 11 10 15 15 C 1.40173 * 110.99933 * 180.02562 * 14 13 11 16 16 C 1.38960 * 120.06269 * 299.73143 * 15 14 13 17 17 F 1.35099 * 120.03226 * 359.97438 * 16 15 14 18 18 C 1.38344 * 119.93900 * 179.72450 * 16 15 14 19 19 C 1.38464 * 120.05945 * 0.57027 * 18 16 15 20 20 F 1.35102 * 119.93664 * 179.72556 * 19 18 16 21 21 C 1.38451 * 120.11867 * 359.69748 * 19 18 16 22 22 C 1.38349 * 120.06447 * 0.02562 * 21 19 18 23 23 F 1.35092 * 120.02788 * 180.02562 * 22 21 19 24 24 H 0.97000 * 119.99968 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46739 * 59.99909 * 9 7 2 26 26 H 1.08995 * 109.47079 * 299.99751 * 9 7 2 27 27 H 0.96997 * 119.99567 * 0.02562 * 10 9 7 28 28 H 1.09004 * 109.46763 * 60.00720 * 13 11 10 29 29 H 1.08995 * 109.47483 * 300.00377 * 13 11 10 30 30 H 1.00901 * 111.00067 * 303.95401 * 14 13 11 31 31 H 1.08003 * 119.97456 * 180.26941 * 18 16 15 32 32 H 1.08004 * 119.96500 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7538 -4.8833 0.0011 12 8 0.5614 -5.1049 0.0011 13 6 2.7331 -6.0287 0.0005 14 7 1.9986 -7.3009 0.0006 15 6 2.8807 -8.3903 0.0006 16 6 3.7823 -8.5560 -1.0437 17 9 3.8094 -7.6674 -2.0610 18 6 4.6557 -9.6289 -1.0382 19 6 4.6240 -10.5437 0.0007 20 9 5.4742 -11.5936 0.0008 21 6 3.7229 -10.3840 1.0397 22 6 2.8511 -9.3098 1.0422 23 9 1.9726 -9.1544 2.0566 24 1 -0.4850 0.8400 0.0004 25 1 0.6247 -2.5570 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 3.1567 -3.4353 0.0009 28 1 3.3604 -5.9709 0.8901 29 1 3.3591 -5.9711 -0.8899 30 1 1.3625 -7.3511 0.7822 31 1 5.3596 -9.7558 -1.8475 32 1 3.7006 -11.0988 1.8490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088722021.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:00 Heat of formation + Delta-G solvation = -165.228167 kcal Electronic energy + Delta-G solvation = -21720.682022 eV Core-core repulsion = 17651.868441 eV Total energy + Delta-G solvation = -4068.813580 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.25174 -50.15760 -50.06255 -40.85633 -39.88231 -36.81225 -36.08040 -34.38756 -31.69360 -31.12286 -29.42247 -27.22493 -24.66977 -24.32842 -23.31056 -21.55971 -19.77580 -19.60248 -18.83544 -18.18487 -17.57641 -17.26605 -17.13707 -17.02343 -16.85437 -16.61321 -16.47600 -16.38122 -16.23025 -15.88478 -15.36408 -15.21868 -14.74153 -14.45790 -14.00966 -13.81643 -13.43559 -13.27308 -13.03095 -12.93278 -12.73535 -12.65195 -12.23555 -11.50153 -11.29137 -10.81655 -10.75925 -10.07785 -9.88930 -9.13437 -8.29987 -6.46755 -0.35918 -0.32479 1.43497 1.45786 1.56928 1.63650 1.91539 2.16733 2.37771 2.43531 2.80950 3.05182 3.05679 3.13678 3.43633 3.70867 3.75895 4.08248 4.17441 4.30754 4.46627 4.56931 4.62349 4.78542 5.07301 5.22085 5.28026 5.44451 5.58427 5.66003 5.82716 5.86127 6.63567 6.82479 7.21663 7.40757 8.82211 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.032446 B = 0.003009 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.769105 B = 9303.011419 C = 9702.604632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.985 3.015 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.254 1.254 7 C -0.556 4.556 8 H 0.086 0.914 9 C 0.267 3.733 10 N -0.703 5.703 11 C 0.496 3.504 12 O -0.588 6.588 13 C 0.048 3.952 14 N -0.624 5.624 15 C 0.035 3.965 16 C 0.126 3.874 17 F -0.123 7.123 18 C -0.157 4.157 19 C 0.136 3.864 20 F -0.123 7.123 21 C -0.158 4.158 22 C 0.099 3.901 23 F -0.128 7.128 24 H 0.269 0.731 25 H -0.012 1.012 26 H -0.010 1.010 27 H 0.410 0.590 28 H 0.104 0.896 29 H 0.129 0.871 30 H 0.370 0.630 31 H 0.181 0.819 32 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.679 -21.574 1.121 26.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.594 4.594 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.354 5.354 11 C 0.283 3.717 12 O -0.469 6.469 13 C -0.081 4.081 14 N -0.249 5.249 15 C -0.066 4.066 16 C 0.104 3.896 17 F -0.102 7.102 18 C -0.177 4.177 19 C 0.115 3.885 20 F -0.101 7.101 21 C -0.178 4.178 22 C 0.076 3.924 23 F -0.106 7.106 24 H 0.078 0.922 25 H 0.006 0.994 26 H 0.008 0.992 27 H 0.246 0.754 28 H 0.121 0.879 29 H 0.147 0.853 30 H 0.194 0.806 31 H 0.199 0.801 32 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 13.528 -21.506 0.458 25.411 hybrid contribution 0.104 1.093 0.751 1.330 sum 13.632 -20.413 1.209 24.576 Atomic orbital electron populations 1.70139 1.08300 1.28601 1.49940 1.26074 0.95772 1.03949 0.93844 0.85148 0.78522 0.76918 0.78585 1.19659 1.21035 1.17780 1.21622 0.94388 0.90482 1.52929 0.89635 1.18569 0.88648 0.84156 0.94250 1.46127 1.11432 1.05255 1.72579 1.21023 0.89590 0.84882 0.76236 1.90670 1.18983 1.85305 1.51929 1.22061 0.94468 0.85197 1.06372 1.57138 1.17186 1.00118 1.50491 1.18980 0.96559 0.96150 0.94953 1.16599 0.97701 0.90221 0.85119 1.91525 1.95616 1.66268 1.56758 1.21161 1.01645 0.93402 1.01519 1.16651 0.90722 0.86170 0.94960 1.91576 1.68083 1.54111 1.96332 1.21131 0.95946 0.99159 1.01526 1.17054 0.92404 0.97909 0.85007 1.91537 1.66659 1.95302 1.57113 0.92236 0.99445 0.99175 0.75363 0.87853 0.85321 0.80584 0.80130 0.80377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.04 13.29 21.45 0.28 -55.76 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.99 41.92 29.54 68.60 2.03 43.94 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 7 C -0.56 -29.91 9.28 25.60 0.24 -29.68 16 8 H 0.09 4.12 7.60 -2.91 -0.02 4.09 16 9 C 0.27 14.51 5.43 85.63 0.46 14.97 16 10 N -0.70 -29.04 5.55 -466.79 -2.59 -31.63 16 11 C 0.50 19.52 7.87 87.66 0.69 20.21 16 12 O -0.59 -28.97 16.20 -3.03 -0.05 -29.02 16 13 C 0.05 1.29 5.84 85.56 0.50 1.79 16 14 N -0.62 -17.12 6.13 -341.73 -2.10 -19.21 16 15 C 0.04 0.75 5.79 38.15 0.22 0.97 16 16 C 0.13 2.35 6.99 22.47 0.16 2.51 16 17 F -0.12 -2.71 15.11 44.97 0.68 -2.03 16 18 C -0.16 -2.07 10.00 22.35 0.22 -1.85 16 19 C 0.14 1.74 7.30 22.37 0.16 1.90 16 20 F -0.12 -1.60 17.26 44.97 0.78 -0.82 16 21 C -0.16 -2.06 10.00 22.35 0.22 -1.84 16 22 C 0.10 1.80 7.29 22.47 0.16 1.97 16 23 F -0.13 -2.65 16.25 44.97 0.73 -1.92 16 24 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 25 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 26 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 27 H 0.41 13.66 8.32 -92.71 -0.77 12.89 16 28 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.13 3.07 6.08 -2.39 -0.01 3.05 16 30 H 0.37 10.67 7.35 -89.69 -0.66 10.01 16 31 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 32 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -70.94 300.09 3.05 -67.90 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -0.22 Total: 16.95 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 3.51 Total: 11.59 kcal Atomic # 7 Polarization: -102.19 SS G_CDS: -4.40 Total: -106.60 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.05 Total: -29.02 kcal Atomic # 9 Polarization: -6.96 SS G_CDS: 2.19 Total: -4.77 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Total: -70.94 3.05 -67.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088722021.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.333 kcal (2) G-P(sol) polarization free energy of solvation -70.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds