Wall clock time and date at job start Tue Mar 31 2020 05:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36858 * 120.00573 * 2 1 4 4 H 1.07996 * 120.00021 * 160.62992 * 3 2 1 5 5 C 1.39027 * 119.99549 * 340.63527 * 3 2 1 6 6 N 1.31383 * 119.99985 * 341.90488 * 5 3 2 7 7 Si 1.86799 * 119.99877 * 161.90291 * 5 3 2 8 8 H 1.48502 * 109.47038 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.46978 * 119.99965 * 7 5 3 10 10 H 1.48499 * 109.47184 * 239.99980 * 7 5 3 11 11 C 1.34777 * 120.00089 * 179.97438 * 2 1 3 12 12 O 1.21748 * 120.00624 * 185.37137 * 11 2 1 13 13 C 1.46448 * 119.99895 * 5.37084 * 11 2 1 14 14 C 1.37032 * 126.13032 * 187.17148 * 13 11 2 15 15 N 1.30596 * 114.00782 * 179.77437 * 14 13 11 16 16 C 1.30357 * 117.31900 * 0.47949 * 15 14 13 17 17 C 1.47771 * 124.74220 * 179.80615 * 16 15 14 18 18 C 1.39610 * 120.14412 * 359.69959 * 17 16 15 19 19 C 1.37951 * 119.84714 * 180.02562 * 18 17 16 20 20 C 1.38372 * 120.14545 * 359.97438 * 19 18 17 21 21 C 1.38356 * 120.30086 * 0.26561 * 20 19 18 22 22 C 1.37952 * 120.14754 * 359.47783 * 21 20 19 23 23 S 1.70918 * 110.51914 * 359.53998 * 16 15 14 24 24 H 1.08998 * 109.46963 * 216.09819 * 1 2 3 25 25 H 1.09004 * 109.46908 * 336.09674 * 1 2 3 26 26 H 1.09002 * 109.46959 * 96.08913 * 1 2 3 27 27 H 0.97002 * 120.00124 * 180.02562 * 6 5 3 28 28 H 1.07999 * 122.99489 * 0.02632 * 14 13 11 29 29 H 1.07996 * 120.07956 * 359.97438 * 18 17 16 30 30 H 1.08001 * 119.92669 * 180.02562 * 19 18 17 31 31 H 1.08006 * 119.84792 * 179.97438 * 20 19 18 32 32 H 1.07996 * 119.93018 * 179.74382 * 21 20 19 33 33 H 1.08003 * 120.07553 * 180.25534 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1852 0.0000 4 1 3.1835 1.2115 0.3102 5 6 1.5132 2.3551 -0.3992 6 7 0.4040 2.2933 -1.1006 7 14 2.2357 4.0150 0.0615 8 1 3.4798 3.8126 0.8468 9 1 2.5488 4.7784 -1.1730 10 1 1.2531 4.7734 0.8767 11 6 2.1389 -1.1672 0.0005 12 8 3.3523 -1.1696 0.0992 13 6 1.4114 -2.4327 -0.1176 14 6 1.9478 -3.6876 0.0064 15 7 1.0804 -4.6530 -0.1389 16 6 -0.1541 -4.3157 -0.3871 17 6 -1.2646 -5.2705 -0.5841 18 6 -1.0282 -6.6447 -0.5156 19 6 -2.0693 -7.5306 -0.7010 20 6 -3.3457 -7.0597 -0.9537 21 6 -3.5859 -5.6992 -1.0278 22 6 -2.5549 -4.8023 -0.8391 23 16 -0.3103 -2.6147 -0.4456 24 1 -0.3633 -0.8304 0.6055 25 1 -0.3633 0.9396 0.4164 26 1 -0.3633 -0.1090 -1.0219 27 1 -0.0397 3.1096 -1.3795 28 1 2.9938 -3.8626 0.2104 29 1 -0.0324 -7.0135 -0.3188 30 1 -1.8879 -8.5939 -0.6479 31 1 -4.1572 -7.7576 -1.0985 32 1 -4.5836 -5.3384 -1.2295 33 1 -2.7445 -3.7404 -0.8931 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101515261.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:58 Heat of formation + Delta-G solvation = 47.910890 kcal Electronic energy + Delta-G solvation = -19283.952855 eV Core-core repulsion = 16208.991290 eV Total energy + Delta-G solvation = -3074.961566 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.58936 -38.86205 -38.02449 -34.91954 -32.31646 -31.86612 -31.02992 -29.07634 -26.73633 -25.85295 -24.43701 -22.80952 -22.16624 -20.86133 -18.73142 -17.90803 -17.14977 -16.62452 -15.82096 -15.49475 -14.99846 -14.71944 -14.66087 -14.33333 -13.83260 -13.72462 -13.48388 -13.35803 -12.66192 -12.63413 -12.06585 -11.85569 -11.63330 -11.52040 -11.20050 -11.12020 -10.87341 -10.62440 -10.47096 -9.57416 -9.41842 -9.10652 -9.03785 -8.83067 -8.69853 -8.08520 -7.83977 -6.68175 -4.05623 0.33146 1.33211 1.55391 1.70572 2.15298 2.97659 3.11628 3.13088 3.19112 3.84142 3.90086 4.09833 4.27428 4.62674 4.84777 4.87062 4.88041 5.04561 5.23379 5.42689 5.52645 5.62312 5.79757 5.89513 5.95025 5.97615 6.32209 6.40210 6.45419 6.46739 6.68099 6.83966 6.86511 7.27073 7.79756 8.11181 8.18440 8.87992 9.06048 9.68899 10.35099 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.033605 B = 0.003988 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.012990 B = 7020.091130 C = 7798.582577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.420 5.420 3 C -0.294 4.294 4 H 0.111 0.889 5 C 0.030 3.970 6 N -0.860 5.860 7 Si 0.932 3.068 8 H -0.264 1.264 9 H -0.278 1.278 10 H -0.276 1.276 11 C 0.497 3.503 12 O -0.580 6.580 13 C -0.239 4.239 14 C 0.072 3.928 15 N -0.466 5.466 16 C 0.000 4.000 17 C -0.007 4.007 18 C -0.082 4.082 19 C -0.122 4.122 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.107 4.107 23 S 0.208 5.792 24 H 0.039 0.961 25 H 0.099 0.901 26 H 0.065 0.935 27 H 0.275 0.725 28 H 0.182 0.818 29 H 0.133 0.867 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.522 -11.366 0.358 15.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.136 5.136 3 C -0.423 4.423 4 H 0.129 0.871 5 C -0.176 4.176 6 N -0.497 5.497 7 Si 0.758 3.242 8 H -0.187 1.187 9 H -0.204 1.204 10 H -0.202 1.202 11 C 0.287 3.713 12 O -0.467 6.467 13 C -0.364 4.364 14 C -0.087 4.087 15 N -0.180 5.180 16 C -0.268 4.268 17 C -0.010 4.010 18 C -0.103 4.103 19 C -0.141 4.141 20 C -0.137 4.137 21 C -0.135 4.135 22 C -0.128 4.128 23 S 0.467 5.533 24 H 0.056 0.944 25 H 0.117 0.883 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.199 0.801 29 H 0.151 0.849 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.805 -11.052 0.180 15.458 hybrid contribution 1.019 0.640 0.198 1.220 sum -9.786 -10.412 0.378 14.294 Atomic orbital electron populations 1.21848 0.81353 1.01104 1.01361 1.43608 1.05544 1.05125 1.59301 1.19946 0.98449 0.82705 1.41161 0.87098 1.25480 0.96547 1.00642 0.94918 1.70013 1.18472 1.30019 1.31173 0.85756 0.79420 0.80303 0.78738 1.18747 1.20351 1.20191 1.16510 0.86769 0.81487 0.86578 1.90676 1.12564 1.85890 1.57585 1.26637 0.95782 1.00550 1.13437 1.22115 1.00338 0.85223 1.01041 1.66229 1.00222 1.36712 1.14847 1.25507 0.94667 0.98937 1.07738 1.17953 0.90232 0.91967 1.00892 1.21322 0.99859 0.91694 0.97440 1.21122 0.92823 0.99671 1.00443 1.21241 0.96988 0.95589 0.99912 1.20997 0.98857 0.93162 1.00517 1.21215 0.91721 1.00030 0.99827 1.84263 1.06766 0.99273 1.62974 0.94372 0.88273 0.91674 0.91449 0.80125 0.84880 0.85775 0.86007 0.85588 0.85693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.91 7.19 59.84 0.43 2.34 16 2 N -0.42 -10.63 3.01 -123.77 -0.37 -11.00 16 3 C -0.29 -7.83 9.33 -15.02 -0.14 -7.97 16 4 H 0.11 3.09 7.35 -52.49 -0.39 2.71 16 5 C 0.03 0.74 4.94 -17.45 -0.09 0.66 16 6 N -0.86 -21.21 10.85 55.50 0.60 -20.61 16 7 Si 0.93 19.26 29.59 -169.99 -5.03 14.23 16 8 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 9 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 10 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 11 C 0.50 12.61 7.58 -12.95 -0.10 12.51 16 12 O -0.58 -16.42 16.53 5.15 0.09 -16.34 16 13 C -0.24 -5.09 6.24 -36.72 -0.23 -5.32 16 14 C 0.07 1.43 11.17 -18.51 -0.21 1.23 16 15 N -0.47 -8.70 10.03 -11.99 -0.12 -8.82 16 16 C 0.00 0.01 7.13 -14.28 -0.10 -0.10 16 17 C -0.01 -0.11 5.87 -104.98 -0.62 -0.72 16 18 C -0.08 -1.07 9.67 -39.17 -0.38 -1.45 16 19 C -0.12 -1.27 10.03 -39.64 -0.40 -1.67 16 20 C -0.12 -1.12 10.04 -39.49 -0.40 -1.52 16 21 C -0.12 -1.18 10.03 -39.64 -0.40 -1.58 16 22 C -0.11 -1.32 9.57 -39.18 -0.37 -1.70 16 23 S 0.21 3.59 16.91 -107.50 -1.82 1.77 16 24 H 0.04 0.73 5.11 -27.99 -0.14 0.59 16 25 H 0.10 2.19 6.45 -51.93 -0.34 1.86 16 26 H 0.06 1.40 7.40 -51.93 -0.38 1.01 16 27 H 0.28 6.31 8.31 -40.82 -0.34 5.97 16 28 H 0.18 3.42 8.06 -52.49 -0.42 2.99 16 29 H 0.13 1.76 7.79 -52.49 -0.41 1.35 16 30 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 32 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.13 1.41 7.22 -52.48 -0.38 1.04 16 LS Contribution 298.90 15.07 4.50 4.50 Total: -1.00 -30.08 298.90 -8.01 -38.08 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -2.86 Total: 3.45 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -2.99 Total: -5.29 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.11 Total: -40.43 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.09 Total: -16.34 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.23 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -1.82 Total: 1.77 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.08 -8.01 -38.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101515261.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.995 kcal (2) G-P(sol) polarization free energy of solvation -30.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds