Wall clock time and date at job start Tue Mar 31 2020 05:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36529 * 120.00051 * 2 1 4 4 H 1.07996 * 119.99944 * 205.65972 * 3 2 1 5 5 C 1.39262 * 119.99776 * 25.66624 * 3 2 1 6 6 N 1.31235 * 120.00153 * 11.33846 * 5 3 2 7 7 Si 1.86803 * 119.99696 * 191.34025 * 5 3 2 8 8 H 1.48500 * 109.46782 * 59.99685 * 7 5 3 9 9 H 1.48491 * 109.46975 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47119 * 299.99877 * 7 5 3 11 11 C 1.34772 * 119.99657 * 180.02562 * 2 1 3 12 12 O 1.21752 * 119.99927 * 179.97438 * 11 2 1 13 13 C 1.46362 * 120.00243 * 0.27329 * 11 2 1 14 14 C 1.35150 * 119.99804 * 179.72178 * 13 11 2 15 15 C 1.46664 * 119.99537 * 179.97438 * 14 13 11 16 16 N 1.29409 * 124.88544 * 179.97438 * 15 14 13 17 17 C 1.33417 * 118.10109 * 179.97438 * 16 15 14 18 18 C 1.41511 * 128.76756 * 180.02562 * 17 16 15 19 19 C 1.35974 * 120.51902 * 179.97438 * 18 17 16 20 20 C 1.38917 * 120.84603 * 359.97438 * 19 18 17 21 21 C 1.37588 * 120.06135 * 0.02562 * 20 19 18 22 22 C 1.39437 * 120.04569 * 0.02562 * 21 20 19 23 23 S 1.75855 * 124.88613 * 359.70386 * 15 14 13 24 24 H 1.08999 * 109.47215 * 264.92236 * 1 2 3 25 25 H 1.09002 * 109.47003 * 24.92294 * 1 2 3 26 26 H 1.09002 * 109.47391 * 144.92075 * 1 2 3 27 27 H 0.96991 * 119.99503 * 180.02562 * 6 5 3 28 28 H 1.07994 * 119.99480 * 359.72710 * 13 11 2 29 29 H 1.07994 * 120.00189 * 0.02562 * 14 13 11 30 30 H 1.08002 * 119.73523 * 359.97213 * 18 17 16 31 31 H 1.07993 * 119.57399 * 179.97438 * 19 18 17 32 32 H 1.07998 * 119.96845 * 179.97438 * 20 19 18 33 33 H 1.08000 * 119.97574 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1477 1.1824 0.0000 4 1 3.1478 1.2285 -0.4050 5 6 1.5544 2.3289 0.5224 6 7 0.4412 2.2361 1.2112 7 14 2.3431 3.9990 0.2425 8 1 2.4249 4.2696 -1.2154 9 1 1.5218 5.0498 0.8953 10 1 3.7094 4.0050 0.8245 11 6 2.1388 -1.1672 -0.0005 12 8 3.3563 -1.1673 -0.0010 13 6 1.4070 -2.4347 -0.0071 14 6 2.0828 -3.6051 -0.0133 15 6 1.3494 -4.8752 -0.0194 16 7 1.8986 -6.0470 -0.0260 17 6 1.0996 -7.1154 -0.0304 18 6 1.4526 -8.4858 -0.0373 19 6 0.4905 -9.4467 -0.0406 20 6 -0.8563 -9.1061 -0.0366 21 6 -1.2325 -7.7827 -0.0299 22 6 -0.2625 -6.7811 -0.0276 23 16 -0.4028 -5.0249 -0.0119 24 1 -0.3633 -0.0910 1.0236 25 1 -0.3633 0.9320 -0.4331 26 1 -0.3634 -0.8410 -0.5906 27 1 0.0279 3.0347 1.5747 28 1 0.3271 -2.4346 -0.0071 29 1 3.1627 -3.6051 -0.0130 30 1 2.4944 -8.7706 -0.0401 31 1 0.7771 -10.4879 -0.0463 32 1 -1.6086 -9.8809 -0.0397 33 1 -2.2800 -7.5196 -0.0265 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101515705.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:04 Heat of formation + Delta-G solvation = 50.824732 kcal Electronic energy + Delta-G solvation = -18745.202857 eV Core-core repulsion = 15670.367645 eV Total energy + Delta-G solvation = -3074.835212 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.26790 -38.61124 -37.01028 -34.95250 -33.06419 -31.82397 -31.26500 -29.40183 -26.73427 -25.63246 -24.40553 -23.27976 -21.97786 -20.42258 -18.98157 -17.94798 -17.23386 -16.86135 -16.10049 -15.50907 -15.20677 -14.82084 -14.76346 -14.27779 -14.00114 -13.99217 -13.36358 -12.94978 -12.55292 -12.26995 -12.09716 -11.96871 -11.76477 -11.49287 -11.36733 -10.96829 -10.85338 -10.53345 -10.47967 -10.23780 -9.72421 -9.62934 -9.19694 -8.57705 -8.26090 -8.14334 -7.85015 -6.57947 -4.01840 0.02277 1.01289 1.20957 1.60068 1.67566 2.71670 3.12538 3.14538 3.18048 3.61946 3.78679 4.01252 4.25075 4.48531 4.67762 4.78234 4.99618 5.01799 5.15186 5.17540 5.40097 5.43050 5.70709 5.88332 5.97829 6.08608 6.19919 6.20433 6.42064 6.58668 6.64795 6.72533 7.02923 7.32843 7.66200 7.94787 8.29089 8.99083 9.17851 9.83180 10.44923 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.048269 B = 0.003084 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.941837 B = 9076.434867 C = 9588.469380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.418 5.418 3 C -0.295 4.295 4 H 0.105 0.895 5 C 0.031 3.969 6 N -0.863 5.863 7 Si 0.933 3.067 8 H -0.270 1.270 9 H -0.282 1.282 10 H -0.269 1.269 11 C 0.451 3.549 12 O -0.591 6.591 13 C -0.107 4.107 14 C -0.081 4.081 15 C 0.173 3.827 16 N -0.474 5.474 17 C 0.095 3.905 18 C -0.070 4.070 19 C -0.109 4.109 20 C -0.112 4.112 21 C -0.069 4.069 22 C -0.185 4.185 23 S 0.061 5.939 24 H 0.057 0.943 25 H 0.079 0.921 26 H 0.032 0.968 27 H 0.275 0.725 28 H 0.119 0.881 29 H 0.157 0.843 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.250 -16.806 -2.172 18.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.133 5.133 3 C -0.424 4.424 4 H 0.122 0.878 5 C -0.175 4.175 6 N -0.500 5.500 7 Si 0.759 3.241 8 H -0.195 1.195 9 H -0.207 1.207 10 H -0.194 1.194 11 C 0.242 3.758 12 O -0.479 6.479 13 C -0.135 4.135 14 C -0.106 4.106 15 C -0.105 4.105 16 N -0.187 5.187 17 C -0.028 4.028 18 C -0.091 4.091 19 C -0.130 4.130 20 C -0.134 4.134 21 C -0.092 4.092 22 C -0.304 4.304 23 S 0.319 5.681 24 H 0.076 0.924 25 H 0.098 0.902 26 H 0.050 0.950 27 H 0.085 0.915 28 H 0.136 0.864 29 H 0.174 0.826 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.086 -15.892 -2.056 17.521 hybrid contribution 0.222 0.000 0.041 0.226 sum -6.864 -15.892 -2.015 17.428 Atomic orbital electron populations 1.21669 0.80946 1.00587 1.01052 1.43562 1.05845 1.05051 1.58836 1.19787 1.01588 0.84223 1.36805 0.87753 1.25556 0.96453 1.00759 0.94722 1.69894 1.18529 1.30791 1.30750 0.85869 0.79297 0.79949 0.78975 1.19526 1.20669 1.19371 1.17716 0.87624 0.83367 0.87059 1.90670 1.13090 1.86771 1.57326 1.23520 0.99602 0.93912 0.96430 1.21256 1.00467 0.85881 1.03016 1.25819 0.91664 0.95095 0.97971 1.66236 1.37260 0.97166 1.18018 1.19139 0.87201 0.93810 1.02602 1.20502 1.00525 0.88636 0.99444 1.20667 0.92684 0.99433 1.00204 1.21090 0.96381 0.95373 1.00547 1.20339 0.97926 0.91231 0.99676 1.23956 0.98174 0.97425 1.10892 1.85013 1.09315 0.98680 1.75138 0.92409 0.90207 0.94991 0.91504 0.86362 0.82556 0.84881 0.85006 0.84987 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.15 8.28 59.85 0.50 2.65 16 2 N -0.42 -10.48 2.99 -123.82 -0.37 -10.85 16 3 C -0.30 -7.93 9.21 -15.08 -0.14 -8.07 16 4 H 0.10 2.91 7.46 -52.49 -0.39 2.52 16 5 C 0.03 0.79 5.06 -17.43 -0.09 0.70 16 6 N -0.86 -21.76 10.83 55.51 0.60 -21.16 16 7 Si 0.93 19.67 29.57 -169.99 -5.03 14.64 16 8 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 9 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 10 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 11 C 0.45 11.06 7.56 -13.00 -0.10 10.96 16 12 O -0.59 -16.50 15.96 5.14 0.08 -16.42 16 13 C -0.11 -2.08 8.75 -37.41 -0.33 -2.41 16 14 C -0.08 -1.49 9.75 -37.28 -0.36 -1.85 16 15 C 0.17 2.92 7.34 -15.17 -0.11 2.81 16 16 N -0.47 -8.13 10.56 -8.80 -0.09 -8.23 16 17 C 0.10 1.43 6.93 -85.17 -0.59 0.84 16 18 C -0.07 -0.82 10.06 -39.15 -0.39 -1.22 16 19 C -0.11 -0.98 9.93 -40.14 -0.40 -1.38 16 20 C -0.11 -0.98 10.04 -39.57 -0.40 -1.37 16 21 C -0.07 -0.74 10.07 -39.37 -0.40 -1.13 16 22 C -0.19 -2.55 6.55 -38.38 -0.25 -2.80 16 23 S 0.06 0.87 22.15 -107.50 -2.38 -1.51 16 24 H 0.06 1.25 7.85 -51.93 -0.41 0.84 16 25 H 0.08 1.77 6.79 -51.93 -0.35 1.41 16 26 H 0.03 0.56 6.38 -51.93 -0.33 0.23 16 27 H 0.27 6.51 8.30 -40.82 -0.34 6.17 16 28 H 0.12 2.00 5.36 -52.49 -0.28 1.72 16 29 H 0.16 3.04 7.52 -52.49 -0.39 2.65 16 30 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 33 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 304.81 15.07 4.59 4.59 Total: -1.00 -30.66 304.81 -8.64 -39.30 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -2.98 Total: 1.91 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -3.06 Total: -2.28 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.14 Total: -40.23 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: 0.08 Total: -16.42 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.38 Total: -1.51 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.66 -8.64 -39.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101515705.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.121 kcal (2) G-P(sol) polarization free energy of solvation -30.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds