Wall clock time and date at job start Tue Mar 31 2020 05:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36529 * 120.00051 * 2 1 4 4 H 1.07996 * 119.99944 * 205.65972 * 3 2 1 5 5 C 1.39262 * 119.99776 * 25.66624 * 3 2 1 6 6 N 1.31235 * 120.00153 * 11.33846 * 5 3 2 7 7 Si 1.86803 * 119.99696 * 191.34025 * 5 3 2 8 8 H 1.48500 * 109.46782 * 59.99685 * 7 5 3 9 9 H 1.48491 * 109.46975 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47119 * 299.99877 * 7 5 3 11 11 C 1.34772 * 119.99657 * 180.02562 * 2 1 3 12 12 O 1.21752 * 119.99927 * 179.97438 * 11 2 1 13 13 C 1.46362 * 120.00243 * 0.27329 * 11 2 1 14 14 C 1.35150 * 119.99804 * 179.72178 * 13 11 2 15 15 C 1.46664 * 119.99537 * 179.97438 * 14 13 11 16 16 N 1.29409 * 124.88544 * 179.97438 * 15 14 13 17 17 C 1.33417 * 118.10109 * 179.97438 * 16 15 14 18 18 C 1.41511 * 128.76756 * 180.02562 * 17 16 15 19 19 C 1.35974 * 120.51902 * 179.97438 * 18 17 16 20 20 C 1.38917 * 120.84603 * 359.97438 * 19 18 17 21 21 C 1.37588 * 120.06135 * 0.02562 * 20 19 18 22 22 C 1.39437 * 120.04569 * 0.02562 * 21 20 19 23 23 S 1.75855 * 124.88613 * 359.70386 * 15 14 13 24 24 H 1.08999 * 109.47215 * 264.92236 * 1 2 3 25 25 H 1.09002 * 109.47003 * 24.92294 * 1 2 3 26 26 H 1.09002 * 109.47391 * 144.92075 * 1 2 3 27 27 H 0.96991 * 119.99503 * 180.02562 * 6 5 3 28 28 H 1.07994 * 119.99480 * 359.72710 * 13 11 2 29 29 H 1.07994 * 120.00189 * 0.02562 * 14 13 11 30 30 H 1.08002 * 119.73523 * 359.97213 * 18 17 16 31 31 H 1.07993 * 119.57399 * 179.97438 * 19 18 17 32 32 H 1.07998 * 119.96845 * 179.97438 * 20 19 18 33 33 H 1.08000 * 119.97574 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1477 1.1824 0.0000 4 1 3.1478 1.2285 -0.4050 5 6 1.5544 2.3289 0.5224 6 7 0.4412 2.2361 1.2112 7 14 2.3431 3.9990 0.2425 8 1 2.4249 4.2696 -1.2154 9 1 1.5218 5.0498 0.8953 10 1 3.7094 4.0050 0.8245 11 6 2.1388 -1.1672 -0.0005 12 8 3.3563 -1.1673 -0.0010 13 6 1.4070 -2.4347 -0.0071 14 6 2.0828 -3.6051 -0.0133 15 6 1.3494 -4.8752 -0.0194 16 7 1.8986 -6.0470 -0.0260 17 6 1.0996 -7.1154 -0.0304 18 6 1.4526 -8.4858 -0.0373 19 6 0.4905 -9.4467 -0.0406 20 6 -0.8563 -9.1061 -0.0366 21 6 -1.2325 -7.7827 -0.0299 22 6 -0.2625 -6.7811 -0.0276 23 16 -0.4028 -5.0249 -0.0119 24 1 -0.3633 -0.0910 1.0236 25 1 -0.3633 0.9320 -0.4331 26 1 -0.3634 -0.8410 -0.5906 27 1 0.0279 3.0347 1.5747 28 1 0.3271 -2.4346 -0.0071 29 1 3.1627 -3.6051 -0.0130 30 1 2.4944 -8.7706 -0.0401 31 1 0.7771 -10.4879 -0.0463 32 1 -1.6086 -9.8809 -0.0397 33 1 -2.2800 -7.5196 -0.0265 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000101515705.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:03 Heat of formation + Delta-G solvation = 32.026873 kcal Electronic energy + Delta-G solvation = -18746.017994 eV Core-core repulsion = 15670.367645 eV Total energy + Delta-G solvation = -3075.650349 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.29569 -40.47504 -38.05765 -36.83774 -34.60478 -33.69519 -32.11383 -30.50553 -28.48512 -27.22651 -25.87726 -24.36022 -23.16273 -21.67531 -20.43311 -19.17537 -19.01282 -18.47443 -17.37696 -16.77646 -16.42280 -16.14471 -16.06299 -15.91329 -15.75875 -14.95113 -14.67870 -14.59203 -13.87255 -13.61781 -13.42259 -13.26430 -13.14834 -13.07196 -12.81586 -12.66538 -12.39151 -12.13622 -11.85029 -11.22749 -11.09995 -11.00478 -10.83853 -10.56660 -9.78814 -9.35688 -9.18318 -8.45326 -6.04286 -1.14898 0.09094 0.15473 0.34925 0.56301 1.39462 1.41551 1.52177 1.55154 2.21545 2.41163 2.57788 2.70845 3.09186 3.14025 3.56861 3.82030 3.91406 4.06393 4.25445 4.28699 4.32024 4.55689 4.60646 4.84710 4.94257 4.98252 5.08654 5.17566 5.25922 5.29949 5.36420 5.40719 5.77714 6.01537 6.39371 6.50279 7.06111 7.30783 7.92306 8.56967 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.048269 B = 0.003084 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.941837 B = 9076.434867 C = 9588.469380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.435 5.435 3 C -0.345 4.345 4 H 0.077 0.923 5 C 0.002 3.998 6 N -0.881 5.881 7 Si 0.995 3.005 8 H -0.264 1.264 9 H -0.266 1.266 10 H -0.276 1.276 11 C 0.446 3.554 12 O -0.638 6.638 13 C -0.124 4.124 14 C -0.045 4.045 15 C 0.128 3.872 16 N -0.482 5.482 17 C 0.048 3.952 18 C -0.079 4.079 19 C -0.098 4.098 20 C -0.085 4.085 21 C -0.083 4.083 22 C -0.191 4.191 23 S 0.092 5.908 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.280 0.720 28 H 0.147 0.853 29 H 0.138 0.862 30 H 0.141 0.859 31 H 0.173 0.827 32 H 0.177 0.823 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.765 -20.315 -2.310 22.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.150 5.150 3 C -0.474 4.474 4 H 0.094 0.906 5 C -0.202 4.202 6 N -0.518 5.518 7 Si 0.817 3.183 8 H -0.189 1.189 9 H -0.190 1.190 10 H -0.202 1.202 11 C 0.238 3.762 12 O -0.528 6.528 13 C -0.150 4.150 14 C -0.070 4.070 15 C -0.151 4.151 16 N -0.196 5.196 17 C -0.074 4.074 18 C -0.100 4.100 19 C -0.119 4.119 20 C -0.106 4.106 21 C -0.106 4.106 22 C -0.310 4.310 23 S 0.350 5.650 24 H 0.069 0.931 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.164 0.836 29 H 0.155 0.845 30 H 0.159 0.841 31 H 0.190 0.810 32 H 0.194 0.806 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.632 -19.397 -2.193 21.768 hybrid contribution 0.934 0.458 0.082 1.043 sum -8.698 -18.939 -2.112 20.948 Atomic orbital electron populations 1.21650 0.78942 1.01510 1.01186 1.43721 1.07168 1.04701 1.59435 1.19686 1.01572 0.86089 1.40013 0.90560 1.26262 0.96848 1.03302 0.93764 1.69948 1.19147 1.31802 1.30892 0.84975 0.78067 0.76082 0.79132 1.18855 1.19015 1.20151 1.18449 0.87382 0.84869 0.85457 1.90613 1.15366 1.87852 1.58988 1.23138 1.00471 0.91571 0.99858 1.21193 0.99825 0.86911 0.99034 1.25387 0.93599 0.94273 1.01800 1.66163 1.39185 0.97957 1.16248 1.19535 0.87744 0.94446 1.05639 1.20852 1.02019 0.87792 0.99360 1.21200 0.92323 1.00742 0.97593 1.21717 0.97266 0.95469 0.96165 1.20803 0.98591 0.91415 0.99789 1.24290 0.98533 0.97500 1.10719 1.84727 1.06131 0.99745 1.74433 0.93066 0.91423 0.91276 0.90972 0.83592 0.84486 0.84124 0.81000 0.80573 0.82890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.77 8.28 127.77 1.06 5.83 16 2 N -0.44 -22.89 2.99 -663.86 -1.99 -24.87 16 3 C -0.35 -19.62 9.21 84.21 0.78 -18.84 16 4 H 0.08 4.61 7.46 -2.91 -0.02 4.59 16 5 C 0.00 0.13 5.06 85.03 0.43 0.56 16 6 N -0.88 -45.38 10.83 21.71 0.24 -45.14 16 7 Si 1.00 41.37 29.57 68.60 2.03 43.39 16 8 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 9 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 10 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 11 C 0.45 23.07 7.56 86.36 0.65 23.73 16 12 O -0.64 -38.04 15.96 -4.52 -0.07 -38.11 16 13 C -0.12 -4.97 8.75 23.67 0.21 -4.76 16 14 C -0.04 -1.72 9.75 23.76 0.23 -1.49 16 15 C 0.13 4.35 7.34 87.25 0.64 4.99 16 16 N -0.48 -16.55 10.56 -181.77 -1.92 -18.47 16 17 C 0.05 1.37 6.93 40.20 0.28 1.65 16 18 C -0.08 -1.63 10.06 22.55 0.23 -1.40 16 19 C -0.10 -1.24 9.93 21.91 0.22 -1.03 16 20 C -0.08 -0.96 10.04 22.28 0.22 -0.74 16 21 C -0.08 -1.40 10.07 22.41 0.23 -1.17 16 22 C -0.19 -4.80 6.55 23.05 0.15 -4.65 16 23 S 0.09 2.51 22.15 -56.49 -1.25 1.26 16 24 H 0.05 2.25 7.85 -2.39 -0.02 2.23 16 25 H 0.07 3.07 6.79 -2.39 -0.02 3.05 16 26 H 0.07 2.41 6.38 -2.39 -0.02 2.39 16 27 H 0.28 13.38 8.30 -92.72 -0.77 12.61 16 28 H 0.15 4.92 5.36 -2.91 -0.02 4.90 16 29 H 0.14 5.71 7.52 -2.91 -0.02 5.68 16 30 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 31 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 32 H 0.18 0.56 8.06 -2.91 -0.02 0.54 16 33 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -72.07 304.81 3.50 -68.57 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 1.15 Total: 10.68 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 5.32 Total: 2.68 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -3.67 Total: -88.48 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -0.07 Total: -38.11 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.39 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -1.25 Total: 1.26 kcal Total: -72.07 3.50 -68.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101515705.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.601 kcal (2) G-P(sol) polarization free energy of solvation -72.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds