Wall clock time and date at job start Tue Mar 31 2020 06:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 S 1.81002 * 109.47004 * 239.99911 * 2 1 3 5 5 C 1.76198 * 99.99953 * 65.00014 * 4 2 1 6 6 N 1.28537 * 125.02072 * 359.69799 * 5 4 2 7 7 C 1.44589 * 119.83127 * 179.81683 * 6 5 4 8 8 C 1.53674 * 111.24489 * 0.45570 * 7 6 5 9 9 S 1.76753 * 125.01796 * 179.97438 * 5 4 2 10 10 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 11 11 O 1.21287 * 119.99919 * 99.99446 * 10 2 1 12 12 N 1.34772 * 120.00370 * 279.99712 * 10 2 1 13 13 C 1.46505 * 119.99491 * 0.02562 * 12 10 2 14 14 C 1.46500 * 120.00265 * 179.97438 * 12 10 2 15 15 C 1.50696 * 109.47035 * 90.00270 * 14 12 10 16 16 H 1.08006 * 120.00171 * 0.02562 * 15 14 12 17 17 C 1.37875 * 120.00002 * 179.97438 * 15 14 12 18 18 N 1.31512 * 120.00022 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99968 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47219 * 90.00151 * 19 17 15 21 21 H 1.48504 * 109.47196 * 209.99945 * 19 17 15 22 22 H 1.48498 * 109.47375 * 329.99907 * 19 17 15 23 23 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 24 24 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 26 26 H 1.09004 * 109.30616 * 239.87279 * 7 6 5 27 27 H 1.08994 * 108.87710 * 120.75800 * 7 6 5 28 28 H 1.08995 * 110.65436 * 241.33762 * 8 7 6 29 29 H 1.09001 * 110.79238 * 118.30011 * 8 7 6 30 30 H 1.09003 * 109.47301 * 90.00447 * 13 12 10 31 31 H 1.09005 * 109.46875 * 209.99620 * 13 12 10 32 32 H 1.08998 * 109.47226 * 329.99909 * 13 12 10 33 33 H 1.09006 * 109.47086 * 210.00155 * 14 12 10 34 34 H 1.08992 * 109.47048 * 330.00127 * 14 12 10 35 35 H 0.96999 * 119.99942 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1333 -0.8533 -1.4779 5 6 1.5439 0.2422 -2.7257 6 7 0.8740 1.3172 -2.5071 7 6 0.4483 2.1380 -3.6187 8 6 0.8933 1.5336 -4.9597 9 16 1.7805 0.0215 -4.4634 10 6 2.0323 -0.7104 1.2305 11 8 2.4063 -1.8617 1.1558 12 7 2.0659 -0.0664 2.4139 13 6 1.6136 1.3241 2.5042 14 6 2.5537 -0.7572 3.6102 15 6 4.0404 -0.5478 3.7401 16 1 4.5690 0.0414 3.0052 17 6 4.7257 -1.1073 4.7975 18 7 4.0818 -1.8235 5.6931 19 14 6.5686 -0.8483 4.9581 20 1 6.8286 0.3746 5.7595 21 1 7.1764 -2.0221 5.6350 22 1 7.1660 -0.6914 3.6077 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.8777 3.1346 -3.5160 27 1 -0.6388 2.2145 -3.6045 28 1 1.5609 2.2155 -5.4861 29 1 0.0303 1.2879 -5.5787 30 1 0.5474 1.3454 2.7298 31 1 2.1627 1.8341 3.2958 32 1 1.7941 1.8273 1.5543 33 1 2.0520 -0.3566 4.4911 34 1 2.3431 -1.8232 3.5254 35 1 4.5640 -2.2175 6.4369 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103412700.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:18 Heat of formation + Delta-G solvation = -5.566157 kcal Electronic energy + Delta-G solvation = -18396.188202 eV Core-core repulsion = 15454.351648 eV Total energy + Delta-G solvation = -2941.836553 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.19965 -37.90194 -34.95037 -33.32300 -32.28992 -31.04760 -27.82727 -26.02027 -25.53930 -24.49814 -22.47500 -21.63136 -19.31652 -18.03748 -16.79672 -16.45169 -16.24473 -16.09655 -15.41992 -14.71071 -14.66174 -14.25242 -13.97685 -13.57489 -13.21493 -12.97881 -12.81921 -12.28104 -12.17043 -11.99092 -11.92891 -11.80419 -11.51388 -11.27435 -11.22479 -10.91050 -10.62093 -10.28688 -10.18017 -9.66680 -9.64208 -9.07404 -8.45601 -8.20217 -7.89491 -7.74084 -6.06658 -4.11692 0.71219 1.33039 1.56932 1.70897 2.05508 3.24336 3.30077 3.37071 3.42206 3.81543 4.02864 4.36531 4.43255 4.56415 4.85838 4.96794 4.99823 5.12824 5.19007 5.22119 5.28279 5.58307 5.71485 5.82738 5.88874 6.11089 6.23583 6.94424 7.00921 7.37047 7.44178 7.88905 8.18774 8.25463 8.79386 8.96128 9.53526 11.01544 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.028666 B = 0.003828 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.541249 B = 7313.421673 C = 7632.786769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.114 4.114 3 H 0.120 0.880 4 S 0.081 5.919 5 C 0.161 3.839 6 N -0.530 5.530 7 C 0.044 3.956 8 C -0.119 4.119 9 S -0.160 6.160 10 C 0.524 3.476 11 O -0.527 6.527 12 N -0.590 5.590 13 C 0.079 3.921 14 C 0.246 3.754 15 C -0.529 4.529 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.894 5.894 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.273 1.273 23 H 0.081 0.919 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.035 0.965 34 H 0.046 0.954 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.435 9.575 -17.958 22.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.248 4.248 3 H 0.137 0.863 4 S 0.311 5.689 5 C -0.244 4.244 6 N -0.251 5.251 7 C -0.092 4.092 8 C -0.271 4.271 9 S 0.067 5.933 10 C 0.307 3.693 11 O -0.404 6.404 12 N -0.322 5.322 13 C -0.065 4.065 14 C 0.127 3.873 15 C -0.568 4.568 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.533 5.533 19 Si 0.726 3.274 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.198 1.198 23 H 0.100 0.900 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.120 0.880 27 H 0.119 0.881 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.397 7.531 -17.888 21.147 hybrid contribution -0.080 2.220 0.187 2.229 sum -8.477 9.751 -17.701 21.915 Atomic orbital electron populations 1.21962 0.90365 1.03604 1.03987 1.23775 1.01885 1.04181 0.94914 0.86251 1.86780 1.65533 1.24395 0.92144 1.29523 0.97230 0.98167 0.99518 1.70639 1.16497 1.06373 1.31622 1.22844 1.02896 0.99209 0.84235 1.24917 1.03457 0.96821 1.01903 1.86770 1.70750 1.33167 1.02648 1.19378 0.79467 0.86849 0.83606 1.90723 1.48076 1.17024 1.84560 1.48055 1.61879 1.12656 1.09629 1.21762 0.99000 0.83383 1.02332 1.19369 0.94337 0.93767 0.79825 1.21417 0.92951 1.32857 1.09540 0.92354 1.24929 0.98735 0.94818 0.95539 1.69928 1.36180 1.33802 1.13393 0.86483 0.84966 0.77650 0.78279 1.20631 1.21022 1.19787 0.89991 0.91348 0.91038 0.88042 0.88110 0.87314 0.87290 0.93334 0.90409 0.92296 0.94677 0.93604 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.92 37.16 0.33 -1.53 16 2 C -0.11 -1.80 1.92 -27.88 -0.05 -1.86 16 3 H 0.12 1.76 6.30 -51.92 -0.33 1.43 16 4 S 0.08 1.27 21.01 -107.50 -2.26 -0.99 16 5 C 0.16 2.14 7.45 51.38 0.38 2.52 16 6 N -0.53 -6.33 8.17 -61.40 -0.50 -6.83 16 7 C 0.04 0.36 7.54 -4.71 -0.04 0.33 16 8 C -0.12 -0.88 7.48 37.51 0.28 -0.60 16 9 S -0.16 -1.83 23.28 -107.50 -2.50 -4.33 16 10 C 0.52 10.90 6.85 -10.99 -0.08 10.82 16 11 O -0.53 -13.18 15.62 5.55 0.09 -13.09 16 12 N -0.59 -12.39 2.86 -182.95 -0.52 -12.92 16 13 C 0.08 1.24 9.56 59.85 0.57 1.81 16 14 C 0.25 6.37 5.16 -5.20 -0.03 6.34 16 15 C -0.53 -14.94 9.39 -34.44 -0.32 -15.26 16 16 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 19 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 23 H 0.08 1.01 5.87 -51.93 -0.30 0.71 16 24 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.07 0.87 6.94 -51.93 -0.36 0.51 16 26 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.64 7.66 -51.93 -0.40 0.25 16 31 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 32 H 0.06 0.78 5.94 -51.93 -0.31 0.47 16 33 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 LS Contribution 317.90 15.07 4.79 4.79 Total: -1.00 -32.73 317.90 -8.82 -41.55 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: -4.58 Total: -3.54 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 0.95 Total: 4.24 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: -0.29 Total: -45.46 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.09 Total: -13.09 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: -0.56 SS G_CDS: -4.76 Total: -5.32 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.73 -8.82 -41.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103412700.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.985 kcal (2) G-P(sol) polarization free energy of solvation -32.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds