Wall clock time and date at job start Tue Mar 31 2020 06:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 S 1.81002 * 109.47004 * 239.99911 * 2 1 3 5 5 C 1.76198 * 99.99953 * 65.00014 * 4 2 1 6 6 N 1.28537 * 125.02072 * 359.69799 * 5 4 2 7 7 C 1.44589 * 119.83127 * 179.81683 * 6 5 4 8 8 C 1.53674 * 111.24489 * 0.45570 * 7 6 5 9 9 S 1.76753 * 125.01796 * 179.97438 * 5 4 2 10 10 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 11 11 O 1.21287 * 119.99919 * 99.99446 * 10 2 1 12 12 N 1.34772 * 120.00370 * 279.99712 * 10 2 1 13 13 C 1.46505 * 119.99491 * 0.02562 * 12 10 2 14 14 C 1.46500 * 120.00265 * 179.97438 * 12 10 2 15 15 C 1.50696 * 109.47035 * 90.00270 * 14 12 10 16 16 H 1.08006 * 120.00171 * 0.02562 * 15 14 12 17 17 C 1.37875 * 120.00002 * 179.97438 * 15 14 12 18 18 N 1.31512 * 120.00022 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99968 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47219 * 90.00151 * 19 17 15 21 21 H 1.48504 * 109.47196 * 209.99945 * 19 17 15 22 22 H 1.48498 * 109.47375 * 329.99907 * 19 17 15 23 23 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 24 24 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 26 26 H 1.09004 * 109.30616 * 239.87279 * 7 6 5 27 27 H 1.08994 * 108.87710 * 120.75800 * 7 6 5 28 28 H 1.08995 * 110.65436 * 241.33762 * 8 7 6 29 29 H 1.09001 * 110.79238 * 118.30011 * 8 7 6 30 30 H 1.09003 * 109.47301 * 90.00447 * 13 12 10 31 31 H 1.09005 * 109.46875 * 209.99620 * 13 12 10 32 32 H 1.08998 * 109.47226 * 329.99909 * 13 12 10 33 33 H 1.09006 * 109.47086 * 210.00155 * 14 12 10 34 34 H 1.08992 * 109.47048 * 330.00127 * 14 12 10 35 35 H 0.96999 * 119.99942 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1333 -0.8533 -1.4779 5 6 1.5439 0.2422 -2.7257 6 7 0.8740 1.3172 -2.5071 7 6 0.4483 2.1380 -3.6187 8 6 0.8933 1.5336 -4.9597 9 16 1.7805 0.0215 -4.4634 10 6 2.0323 -0.7104 1.2305 11 8 2.4063 -1.8617 1.1558 12 7 2.0659 -0.0664 2.4139 13 6 1.6136 1.3241 2.5042 14 6 2.5537 -0.7572 3.6102 15 6 4.0404 -0.5478 3.7401 16 1 4.5690 0.0414 3.0052 17 6 4.7257 -1.1073 4.7975 18 7 4.0818 -1.8235 5.6931 19 14 6.5686 -0.8483 4.9581 20 1 6.8286 0.3746 5.7595 21 1 7.1764 -2.0221 5.6350 22 1 7.1660 -0.6914 3.6077 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.8777 3.1346 -3.5160 27 1 -0.6388 2.2145 -3.6045 28 1 1.5609 2.2155 -5.4861 29 1 0.0303 1.2879 -5.5787 30 1 0.5474 1.3454 2.7298 31 1 2.1627 1.8341 3.2958 32 1 1.7941 1.8273 1.5543 33 1 2.0520 -0.3566 4.4911 34 1 2.3431 -1.8232 3.5254 35 1 4.5640 -2.2175 6.4369 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103412700.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:18 Heat of formation + Delta-G solvation = -27.867362 kcal Electronic energy + Delta-G solvation = -18397.155255 eV Core-core repulsion = 15454.351648 eV Total energy + Delta-G solvation = -2942.803606 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.85593 -38.73227 -36.71805 -35.04506 -33.97154 -31.80855 -29.73614 -27.51040 -26.30560 -26.08000 -24.25370 -22.43144 -20.67057 -19.28947 -18.73064 -18.16774 -17.42616 -16.87699 -16.73699 -16.46005 -16.09396 -15.58104 -15.03977 -14.80748 -14.58952 -14.19963 -13.90497 -13.73224 -13.56561 -13.37392 -13.15588 -13.06249 -12.95462 -12.81918 -12.55942 -12.42751 -12.22531 -12.01663 -11.73987 -11.44394 -10.77818 -10.64581 -10.51690 -9.52626 -9.12616 -8.93510 -8.23826 -6.38354 -0.28508 0.39074 0.61526 0.87112 1.03268 1.36738 1.40018 1.50187 1.65584 2.21016 2.41000 3.06396 3.36246 3.44076 3.74319 3.81497 3.88486 3.90728 4.38266 4.50027 4.58446 4.61934 4.68189 4.71531 4.73613 4.91798 4.96156 5.13756 5.20232 5.50886 5.77265 6.03211 6.13871 6.56792 6.70652 7.18192 7.35125 8.83548 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.028666 B = 0.003828 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.541249 B = 7313.421673 C = 7632.786769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.091 4.091 3 H 0.135 0.865 4 S 0.023 5.977 5 C 0.158 3.842 6 N -0.529 5.529 7 C 0.035 3.965 8 C -0.102 4.102 9 S -0.196 6.196 10 C 0.515 3.485 11 O -0.580 6.580 12 N -0.597 5.597 13 C 0.074 3.926 14 C 0.260 3.740 15 C -0.546 4.546 16 H 0.053 0.947 17 C 0.010 3.990 18 N -0.927 5.927 19 Si 0.966 3.034 20 H -0.262 1.262 21 H -0.280 1.280 22 H -0.274 1.274 23 H 0.097 0.903 24 H 0.057 0.943 25 H 0.087 0.913 26 H 0.122 0.878 27 H 0.124 0.876 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.031 0.969 34 H 0.001 0.999 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.080 12.488 -19.604 25.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.225 4.225 3 H 0.153 0.847 4 S 0.253 5.747 5 C -0.249 4.249 6 N -0.250 5.250 7 C -0.099 4.099 8 C -0.253 4.253 9 S 0.030 5.970 10 C 0.301 3.699 11 O -0.461 6.461 12 N -0.327 5.327 13 C -0.068 4.068 14 C 0.139 3.861 15 C -0.584 4.584 16 H 0.071 0.929 17 C -0.189 4.189 18 N -0.566 5.566 19 Si 0.791 3.209 20 H -0.187 1.187 21 H -0.206 1.206 22 H -0.199 1.199 23 H 0.116 0.884 24 H 0.076 0.924 25 H 0.105 0.895 26 H 0.140 0.860 27 H 0.142 0.858 28 H 0.148 0.852 29 H 0.150 0.850 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.049 0.951 34 H 0.020 0.980 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.074 10.505 -19.541 23.970 hybrid contribution 0.019 1.410 0.603 1.533 sum -9.055 11.915 -18.938 24.137 Atomic orbital electron populations 1.21949 0.88229 1.03428 1.05416 1.23546 1.03216 1.03557 0.92151 0.84747 1.86971 1.67241 1.26658 0.93793 1.28987 0.98401 0.98363 0.99140 1.70581 1.14726 1.05660 1.34017 1.23080 1.04325 0.99113 0.83425 1.25084 1.04058 0.94387 1.01734 1.86912 1.71915 1.36464 1.01716 1.20195 0.78431 0.86461 0.84790 1.90689 1.50249 1.19566 1.85573 1.48041 1.61657 1.14606 1.08424 1.22066 1.00587 0.80267 1.03907 1.18839 0.93642 0.91823 0.81785 1.21687 0.94208 1.32980 1.09551 0.92889 1.25826 1.03608 0.94353 0.95139 1.70040 1.38117 1.34513 1.13951 0.85431 0.78980 0.78266 0.78250 1.18686 1.20573 1.19898 0.88445 0.92431 0.89469 0.86030 0.85807 0.85225 0.84991 0.90347 0.90842 0.89395 0.95129 0.98040 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.92 71.98 0.64 -2.63 16 2 C -0.09 -2.83 1.92 29.85 0.06 -2.77 16 3 H 0.13 3.68 6.30 -2.39 -0.02 3.67 16 4 S 0.02 0.72 21.01 -56.49 -1.19 -0.46 16 5 C 0.16 3.96 7.45 130.72 0.97 4.94 16 6 N -0.53 -11.04 8.17 -348.17 -2.85 -13.89 16 7 C 0.04 0.43 7.54 86.96 0.66 1.08 16 8 C -0.10 -1.09 7.48 72.21 0.54 -0.55 16 9 S -0.20 -4.17 23.28 -56.49 -1.31 -5.49 16 10 C 0.52 21.92 6.85 87.66 0.60 22.52 16 11 O -0.58 -30.59 15.62 -3.05 -0.05 -30.64 16 12 N -0.60 -25.30 2.86 -851.12 -2.43 -27.73 16 13 C 0.07 2.17 9.56 127.77 1.22 3.39 16 14 C 0.26 14.00 5.16 85.63 0.44 14.44 16 15 C -0.55 -31.56 9.39 25.60 0.24 -31.32 16 16 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 17 C 0.01 0.58 5.46 84.65 0.46 1.04 16 18 N -0.93 -55.99 13.29 21.45 0.28 -55.71 16 19 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 20 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 23 H 0.10 2.14 5.87 -2.39 -0.01 2.13 16 24 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.09 1.89 6.94 -2.39 -0.02 1.87 16 26 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.13 0.90 8.14 -2.39 -0.02 0.89 16 29 H 0.13 0.86 8.14 -2.39 -0.02 0.85 16 30 H 0.08 1.86 7.66 -2.39 -0.02 1.84 16 31 H 0.07 2.24 8.07 -2.38 -0.02 2.22 16 32 H 0.09 2.07 5.94 -2.39 -0.01 2.06 16 33 H 0.03 1.65 8.07 -2.38 -0.02 1.63 16 34 H 0.00 0.09 7.42 -2.39 -0.02 0.07 16 35 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -74.64 317.90 1.42 -73.23 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: 1.10 Total: 3.42 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 5.83 Total: 10.13 kcal Atomic # 7 Polarization: -92.34 SS G_CDS: -4.99 Total: -97.33 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.05 Total: -30.64 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -2.50 Total: -5.95 kcal Total: -74.64 1.42 -73.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103412700.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.362 kcal (2) G-P(sol) polarization free energy of solvation -74.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds